TCONS_00046438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046438
Unique NameTCONS_00046438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046438 ID=TCONS_00046438|Name=TCONS_00046438|organism=Clytia hemisphaerica|type=transcript|length=480bp
CGATTGTTCTGTGGGTGAAAAATTTACCGAATCCAAAACGACATTCTTTA
TTTCCATACTTTTGACATGTTTTCGAATGGCGGTGAACCTGATACTGCTC
AACAAGTTCTTTCAACCTAGATGGTTCAGTGAGTATAATGGCAGAATCCA
AAAATTGTGTATATTCTTCAATACTCTCTAGTGTTAAGACTGGCATATTT
TCAACCCATAAGAGACAATGTGCAAGGGGAGAACCTCTGAACTGGAATTC
TATTCTAATTACATGGAatttcacttttcctaatggcCCGTTAATAACAA
TCTCTTTATAGAAAACTTCAACGCGATAAAGTGCCTTACTAAAAGAACTG
GATTACTATTCAGAAGCTCACATCTTTCAAAATATGGCAATGCAATTATC
TCCTCTTCAGATAGCTCTTGTCCGTTTAGCCTAGGAATTATGTGGGGCAA
TTCGTTCCACCTCAAGTCAGCACAGGACAG
Run BLAST on NCBI

transcript from alignment at scaffold_11:116618..117097

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046438 ID=TCONS_00046438|Name=TCONS_00046438|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at scaffold_11:116618..117097 (Clytia hemisphaerica)
CTGTCCTGTGCTGACTTGAGGTGGAACGAATTGCCCCACATAATTCCTAG
GCTAAACGGACAAGAGCTATCTGAAGAGGAGATAATTGCATTGCCATATT
TTGAAAGATGTGAGCTTCTGAATAGTAATCCAGTTCTTTTAGTAAGGCAC
TTTATCGCGTTGAAGTTTTCTATAAAGAGATTGTTATTAACGGgccatta
ggaaaagtgaaatTCCATGTAATTAGAATAGAATTCCAGTTCAGAGGTTC
TCCCCTTGCACATTGTCTCTTATGGGTTGAAAATATGCCAGTCTTAACAC
TAGAGAGTATTGAAGAATATACACAATTTTTGGATTCTGCCATTATACTC
ACTGAACCATCTAGGTTGAAAGAACTTGTTGAGCAGTATCAGGTTCACCG
CCATTCGAAAACATGTCAAAAGTATGGAAATAAAGAATGTCGTTTTGGAT
TCGGTAAATTTTTCACCCACAGAACAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029638XLOC_029638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046438-exon-scaffold_11-1491911889:116618..117097TCONS_00046438-exon-scaffold_11-1491911889:116618..117097Clytia hemisphaericaexon
TCONS_00046438-exon-scaffold_11-1510915933:116618..117097TCONS_00046438-exon-scaffold_11-1510915933:116618..117097Clytia hemisphaericaexon
TCONS_00046438-exon-scaffold_11-1575043694:116618..117097TCONS_00046438-exon-scaffold_11-1575043694:116618..117097Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:116618..117097 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.09952	4.45251	3.97837	1.56438	1.52351	1.6896	2.1609	2.951	2.39727	3.08855	3.23925	7.27302	2.02143	2.44493	0.766615	1.14965	0	0.468682	2.21633	3.83572	5.38485	6.95995	0.82843	0.979604	2.41136	2.03829	6.35153	4.97996	4.10975	6.33731
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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