TCONS_00046421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046421
Unique NameTCONS_00046421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046421 ID=TCONS_00046421|Name=TCONS_00046421|organism=Clytia hemisphaerica|type=transcript|length=1509bp
GTTGCGCCAGCTTCATGGATTAAAGAAAACAAGTTATACTGGCCGAAGTA
TGGTGCTGATGCGCTAGCAAAAGAGGGAGCGCCACTCGACGAAAGGTGGC
CGTCGTACGATCTTCACGAGGTTAAGAAATATGATGATGACTTTCAGCGC
TTGAATATCTGCCAATATTCCACTACGGAGAATGATAGTCCCGTGAAAAA
GAAACCTGACAATGAACCGAGCCGTGCATCCAGCCCTCAGTTTAATATTT
CTTCCAGCtatcaaaattcattcaagCAAACTCTCCCTGGTGCCATGTAT
CAGAATGAAATTCAACCAGGTCTTGCAATGGTCGATGAAAATTTTGCAAC
AACACCTAACCAAAGGAAAAAATGTGCGGATCAAGTCATTACATATACAG
AGGAAAATTATATTCCTAACAAAAAGAGAAAACAATGCGCAGACGCAGTC
GCTCGCTCGAACTACTCCCCGATGATGGCAGCCAAGAAATTAAACAACAG
CGCGAATGGTTCGTTTGGCTTTATCCCGTTATCTTCGCCCAAAGaaaaaa
gttaccATCCAAATGAGTGTATGCCACCCAATGATTTACTCAAATCAAAT
TCAGGATCACAACCAACCATACCAAATGCTTCAAAATATGGAGATGGGGT
AAACGATTCCAAGAAATGTCAATGAAGCAATACCAATACTCGATGCTCAT
GGAGATGCAAACCATCAAATCAAACCAGGAACGAATTTAGCAAATTCTAA
GCGGTAATATCGACAACGAACCCTTGGATGACCTAGACCAACTGATTGCT
ATGGAGACCATGGATCAATTTGATGCTCTCGAGGAGGAGCTGAGACAGTC
ACGTGAAAAGCGAGTGAAAATGCGAAAACAAATCAAGAAGATTGGGGGGA
AAGACTGTCGCCAACGTGTAAGACTGGCACTGCACGCTCTATTGAGCAAA
CCACTCCAATGGAAGTTTTCCAAAGAAGGGCTTACTGGGAAGCGAAAATT
CATCGGTACCCAGATGTGCAGATGTATACAAAtgGCATTGATAGATCAAA
GCACAAAAAAGGACATCCAAGACGACATTGGATATATTCTGCGTCGTGCA
AACGAGAAATAGAAAATAGACCGTCTAAAGAGGGGCAATCATCTTCAGTC
CAAAAGAAAGCATCTAAGAAGAAAAAAGGTGCTTGTGCAATGAGTGATGA
TTCCAATTAACCCATCTTTTCTGGTTAATCAGAATTGTCACTTATTGTGC
AAACTCCTTTTTTTTCTTAGATGGTTGCTTTTGAAACGCAGGCGATTGCT
TCTCTTTAGANcatgttttttttttttagcaagtgtatgccccttggtca
ggctcgtgtatgcttaagttctcaaagcatctaggcatagtttatgctta
ttatatgcctaagaatcatgcttatgattcaccccgagccaagtttttaa
tgaaatttcaaaaattttgtaaaaatttgttcagattttggaagCAGTGG
AATGTTAGC
Run BLAST on NCBI

transcript from alignment at scaffold_11:59877..64492-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046421 ID=TCONS_00046421|Name=TCONS_00046421|organism=Clytia hemisphaerica|type=transcript|length=4616bp|location=Sequence derived from alignment at scaffold_11:59877..64492- (Clytia hemisphaerica)
GTTGCGCCAGCTTCATGGATTAAAGAAAACAAGTTATACTGGCCGAAGTA
TGGTGCTGATGCGCTAGCAAAAGAGGGAGCGCCACTCGACGAAAGGTGGC
CGTCGTACGATCTTCACGAGGTTAAGAAATATGATGGTATGTTACATTAT
TTCTCTTTAAATTATGTGAAGAAAGAGATTTTCAGGTTTCAAATCAGAAA
AATACCCTAGCATTGTACCCAATACAACATATTTCATGCATTTTTAGGAA
AGAACTGAATAATATTTCTAAGAAAGAACTTTTATCCAAAAATATTTTTG
GTTCAGTTTTGTCATAAAGAAGTTTAAAAGAGGGGGCGATTTGTCTAATT
TCACATCTCCTCTTTTCCCAGATGACTTTCAGCGCTTGAATATCTGCCAA
TATTCCACTACGGAGAATGATAGTCCCGTGAAAAAGAAACCTGACAATGG
TTAGTTTGTTTTTTCACGTCTGTTATTAAAACTTGTGTACGTCATGTTGT
TTTTTAAGAAGGTTTACTTTCAATATTCCCATTCTACTTTTAAAATTTTC
ATTTTTTATAAATAGTGACAAGCCGTTAATCCTTTAGTTTTATCAAAACA
AAATTAAAGTTATATTCTATGTAGATTGGTAATGTTTTAACCCTCTGTTT
AACGATTTGAGGTGTTTTTTTGTCTAGAACCGAGCCGTGCATCCAGCCCT
CAGTTTAATATTTCTTCCAGCTATCAAAATTCATTCAAGCAAACTCTCCC
TGGTGCCATGTATCAGAATGAAATTCAACCAGGTAAATTATGATTAGGGT
GTTTATTCATCTGGATCCTTCTTTCTAGGTTGTACATTCATTTTACCGTG
TGCCTCTATTAATCATATTTTCCAAATTGTATATTTATTTCAGGCTCTAG
AATAGTATGAACCCGTCCCCTATTTAAATTATATGGCCTCCCAAAAAAAG
AAAAGGCTATGATATCAGCAGCAGTCTCACAAAATCTCACAAATCTGTTC
ATTTTAGGATCTTGCAATGGTCGATAAAAATTTTGCAACAGCACCTATAA
ACCAAAGTAAGTCATCACTACTTTCATAAACCATGCCTTACATGGACAGG
TTGATTATTTGGAACTGCCTGTTTTCAAGTTCAATCATCTCCCGAAGCTG
AAGTCTTTATTTTACTTTTAAAGCTTCCTGGTTTTGGAATAAGTTCAACC
CCTTCTTCGACATACCTTTTTTTTACAACAGGGAGAGAATGTGCGGATCC
AGTCGTTCGTTCAAGCTGCTCACCATTAACAGGGAAAATCGACAACAGCA
GTGTGAATGACTTAATCCCATTTGATCCACTAAATAGCTCCATAGGTTAG
TGATCCTAATGTTTTTGGAGCTTAGCCTATTTTAAACTAAATTGACATGT
GGTGCTTTTGAATATATAGAATCGTGATTTATTGTTACATAGTTCAAAAT
CGTATGTCAGAAAAGATTTCATTTACACGTATTTCATTGGTATGCTATCA
GCAGCAGTCTCACAAAATCTCACAAATCTGTTCATTTTAGGTCTTGCAAT
GGTCGATGAAAATTTTGCAACAACACCTAACCAAAGTAAGTCATCACTAC
TTTCAATAACCATGTCTTACTCGCACCTAAACAGACAGGTTGATTACTTG
NTCATTTTAGGTCTTACAATGGTCGATGAAAATTTTGCAACAACACCTAG
CCAAAGTAAGTCATCACTACTTTCAATAGCCATGTCTTACTCGCACCTAA
ACAGACAGGTGGATTACTTGGAACTGCCTGTTTTCAAGTTCAATCATCTT
CTGAAGCTCAAGTCTTTATTTTACTTTTTATGCTTAGAATTTTTACTGGT
TTTGGAATAAGTTCAACCCCTTCTTCGACATACCTTTTTTTTAACAGGGA
AAAAATGTGCGGATCAAGTCATTACATATACAGAGGAAAATTATATTCCT
AACAAAAGTAAGTCATTACTACTATATATAACCATGAATCATGATGTCTG
GTTTTAAATTAAATCACCTCCCGAAGCTTTACGTCAGCCTTGTCTTCAAT
CAACTACTCTTTTAAACATTAGAGAGAAAACAATGCGCAGACGCAGTCGC
TCGCTCGAACTACTCCCCGATGATGGCAGCCAAGAAATTAAACAACAGCG
CGAATGGTTCGTTTGGCTTTATCCCGTTATCTTCGCCCAAAGGTTAGTAA
TTTTCATTTTTCCAAAGTCAAATTTTACCTAACTTAGGATGATTAGTATG
CGTCATATCTTAGTATTCCAATTCGGAGTTTTATATTTCACTATTCCAAT
TCCTTCCGATGAGTCCTTTTTCCCCGTATCTGTTCGAGATGTTAGGTATT
TATATATTTTATACACATATACACTATATTAAAACACTTTTCTTGTAAGA
AGAACCAATATTTTTGGAGATCAAGAAACTAACGTTAAAAATAAAAAAAG
TTTACTTCTGATTTAATTTTGCTTTCTGGGCTATGACTAAACTAAATTGA
CCCCTCTGTTGGCATTTTCACTGGAAAGGAAAAATAATAATACAGCCTCG
ATAACAATATTTGTTTCCTTTTAGAAAAAAGTTACCATCCAAATGAGTGT
ATGCCACCCAATGATTTACTCAAATCAAATTCAGGTACGATTTATCTCAA
TCTAATTTATCCCAAGATTTATTTTAGACATTTTTGGATGTGCACCTGTC
AGACTAACAACGTTTTTCTCTCTGAGTTATTGATTTATCCTTGTGGCTAT
TAAAAGTTTGATTTTCATTTGATAGACATTGTTTTCATAGGATCACAACC
AACCATACCAAATGCTTCAAAATATGGAGATGGGGTAAACGATTCCAAGA
AATGTCAATGAAGCGTAAGAATATACACTCATATGTAAAATTAAAACACT
GTGGTTAGTTTGTTATATAATTACCATTTTCACATGAGTGAATCTTCAAT
TATAGAACAAGTCACTGCGAAAAAAGTGTTCAAAAATATTCTTTAAATAT
ATACTCCAAGAGGATTACTGTAATTGAATCCGAAAAATGCAGCATAAACG
TAAATGCGAAAAGGGTGCCTTGAGTAGGCTAATTTTGGCGTTGACTATTT
TTGCGAATTTGCGAGTAAGTTAGAGTAATAGTTTTTGCTTTCGCTGCCAA
TTACATTTAAATATAAATAGACATCAGTTCTAATGGATACGGAACAAAAA
TTTCATTTTAAAATGGGAATGATTTTTATGGAAGCAAAGTTTCTTTTTCT
CTTAAACTCTTTTCTCCTATTTAATCCTTCTTGTTATTTGTTTTAGAATA
CCAATACTCGATGCTCATGGAGATGCAAACCATCAAATCAAACCAGGAAC
GAATTTAGCAAATTCTAAGCGGTAATATCGACAACGAACCCTTGGATGAC
CTAGACCAACTGATTGCTATGGAGACCATGGATCAATTTGATGCTCTCGA
GGAGGAGCTGAGACAGTCACGTGAAAAGCGAGTGAAAATGGTAAGCGACT
TGAGTCCGTGAGTTTTTACAATGAATCGAGTAAAGTTATAGTGCTGCGGT
AAAAAAAGTTGAGTGTTTGCTTTCTTTATTATTATCTAATATTCATGCTT
CTAAAATCTCTTTAAGGTTCACTTTTTCACCAAAATTTAGTCTCTCTAAG
GGACAGTGATTGAAAGTTTTGGCCGTGTCATCATCAAACTCATAATCAGT
ATGGCTGTGGAGATTTTACTTCATTACTTCAATTTCTTTTATAGCGAAAA
CAAATCAAGAAGATTGGGGGGAAAGACTGTCGCCAACGTGTAAGACTGGC
ACTGCACGCTCTATTGAGCAAACCACTCCAATGGAAGTTTTCCAAAGAAG
GGCTTACTGGGAAGCGAAAATTCATCGGTACCCAGATGTGCAGATGTATA
CAAAGTGAGCTAATCTTCACTCATAATACCATTGTTATATAGCCAAAATC
TCTATTTCATTTTCATCAAAATGCATTTTTTTCCCGTACAAAGATAAGCC
ATGAAAGTGCCAACTAAAACTTATCTTAAGAAAGTAGTCTTATAATATTT
TCTTCATAATAGGCTTGATAAATGATTAATATCAAACGATTTAAAAGCTT
ATTTGAGCCATACAATGTTAGTTTTTTCTTCATTTTTAGTGGCATTGATA
GATCAAAGCACAAAAAAGGACATCCAAGACGACATTGGATATATTCTGCG
TCGTGCAAACGAGAAATAGAAAATAGACCGTCTAAAGAGGGGCAATCATC
TTCAGTCCAAAAGAAAGCATCTAAGAAGAAAAAAGGTGCTTGTGCAATGA
GTGATGATTCCAATTAACCCATCTTTTCTGGTTAATCAGAATTGTCACTT
ATTGTGCAAACTCCTTTTTTTTCTTAGATGGTTGCTTTTGAAACGCAGGC
GATTGCTTCTCTTTAGANCATGTTTTTTTTTTTTAGCAAGTGTATGCCCC
TTGGTCAGGCTCGTGTATGCTTAAGTTCTCAAAGCATCTAGGCATAGTTT
ATGCTTATTATATGCCTAAGAATCATGCTTATGATTCACCCCGAGCCAAG
TTTTTAATGAAATTTCAAAAATTTTGTAAAAATTTGTTCAGATTTTGGAA
GCAGTGGAATGTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029627XLOC_029627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046421-exon-scaffold_11-1575043694:64357..64492TCONS_00046421-exon-scaffold_11-1575043694:64357..64492Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:64044..64121TCONS_00046421-exon-scaffold_11-1575043694:64044..64121Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:63711..63815TCONS_00046421-exon-scaffold_11-1575043694:63711..63815Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:62908..62952TCONS_00046421-exon-scaffold_11-1575043694:62908..62952Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:62536..62595TCONS_00046421-exon-scaffold_11-1575043694:62536..62595Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:62301..62420TCONS_00046421-exon-scaffold_11-1575043694:62301..62420Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:61859..61918TCONS_00046421-exon-scaffold_11-1575043694:61859..61918Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:61629..61702TCONS_00046421-exon-scaffold_11-1575043694:61629..61702Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:61003..61196TCONS_00046421-exon-scaffold_11-1575043694:61003..61196Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:60589..60748TCONS_00046421-exon-scaffold_11-1575043694:60589..60748Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1575043694:59877..60353TCONS_00046421-exon-scaffold_11-1575043694:59877..60353Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:64357..64492TCONS_00046421-exon-scaffold_11-1510915933:64357..64492Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:64044..64121TCONS_00046421-exon-scaffold_11-1510915933:64044..64121Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:63711..63815TCONS_00046421-exon-scaffold_11-1510915933:63711..63815Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:62908..62952TCONS_00046421-exon-scaffold_11-1510915933:62908..62952Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:62536..62595TCONS_00046421-exon-scaffold_11-1510915933:62536..62595Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:62301..62420TCONS_00046421-exon-scaffold_11-1510915933:62301..62420Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:61859..61918TCONS_00046421-exon-scaffold_11-1510915933:61859..61918Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:61629..61702TCONS_00046421-exon-scaffold_11-1510915933:61629..61702Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:61003..61196TCONS_00046421-exon-scaffold_11-1510915933:61003..61196Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:60589..60748TCONS_00046421-exon-scaffold_11-1510915933:60589..60748Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1510915933:59877..60353TCONS_00046421-exon-scaffold_11-1510915933:59877..60353Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:64357..64492TCONS_00046421-exon-scaffold_11-1491911889:64357..64492Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:64044..64121TCONS_00046421-exon-scaffold_11-1491911889:64044..64121Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:63711..63815TCONS_00046421-exon-scaffold_11-1491911889:63711..63815Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:62908..62952TCONS_00046421-exon-scaffold_11-1491911889:62908..62952Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:62536..62595TCONS_00046421-exon-scaffold_11-1491911889:62536..62595Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:62301..62420TCONS_00046421-exon-scaffold_11-1491911889:62301..62420Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:61859..61918TCONS_00046421-exon-scaffold_11-1491911889:61859..61918Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:61629..61702TCONS_00046421-exon-scaffold_11-1491911889:61629..61702Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:61003..61196TCONS_00046421-exon-scaffold_11-1491911889:61003..61196Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:60589..60748TCONS_00046421-exon-scaffold_11-1491911889:60589..60748Clytia hemisphaericaexon
TCONS_00046421-exon-scaffold_11-1491911889:59877..60353TCONS_00046421-exon-scaffold_11-1491911889:59877..60353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:59877..64492 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.133899	0.0654997	0	0	0	0	0	0	0	0.318798	0	0	0	0	0	0	0	0	0.949199	0	0	0	0	0.113317	0.683007	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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