TCONS_00046412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046412
Unique NameTCONS_00046412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046412 ID=TCONS_00046412|Name=TCONS_00046412|organism=Clytia hemisphaerica|type=transcript|length=659bp
CCCCTATTGGCATAATACAAAATCGCAGAGAAATGTAATAGTTCAAAACA
CACTTCATACATTGTACACTATCGAAACATCATCGAATAACTCTCTGTAA
ACTTGCTAAGACAGTAAAGATATAGAATATAAtcttagagaaaaaaatta
aatggttTTTAAAATGCTTAGTAAATAAGCTAATGCaaatttaatgtaaa
ttttatccCATATTACACACAAGAGTAAAGTTGGTTTggagaaattgcac
aaaaaacgTACAAACATCATAACATCGtcataaaacattaaaaagcaGTT
GATAAATTTTCGATAATTACTAGAAAAACATATAGAAAATAGttgtagaa
aaaaattatttcatgcATAAAACACTACAGCACAGTGATCTTACAAGCTT
CTTTATAAAAATTCACAACGTGATTTAAATAAAACTTATAATCAATGCAG
TGCAGACAGTCAAAGAAAGTTTGTGAGTAGTAGTTTAGATGAAGTCATGT
TCTGCGGTTATAAATGCTTCATTTCACAAAGCTAGAGGTAATATTATTAT
TGATCACAGAGAAAACTGAACAAAAATGCATAAGAGATTATATGAGATTA
GTATTTAGagctaaaaagtaaaatcaaagagaaatatcattttattttac
TATGTCTGT
Run BLAST on NCBI

transcript from alignment at scaffold_109:82980..83638

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046412 ID=TCONS_00046412|Name=TCONS_00046412|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at scaffold_109:82980..83638 (Clytia hemisphaerica)
ACAGACATAgtaaaataaaatgatatttctctttgattttactttttagc
tCTAAATACTAATCTCATATAATCTCTTATGCATTTTTGTTCAGTTTTCT
CTGTGATCAATAATAATATTACCTCTAGCTTTGTGAAATGAAGCATTTAT
AACCGCAGAACATGACTTCATCTAAACTACTACTCACAAACTTTCTTTGA
CTGTCTGCACTGCATTGATTATAAGTTTTATTTAAATCACGTTGTGAATT
TTTATAAAGAAGCTTGTAAGATCACTGTGCTGTAGTGTTTTATgcatgaa
ataatttttttctacaaCTATTTTCTATATGTTTTTCTAGTAATTATCGA
AAATTTATCAACtgctttttaatgttttatgaCGATGTTATGATGTTTGT
AcgttttttgtgcaatttctccAAACCAACTTTACTCTTGTGTGTAATAT
GggataaaatttacattaaatttGCATTAGCTTATTTACTAAGCATTTTA
AAaaccatttaatttttttctctaagaTTATATTCTATATCTTTACTGTC
TTAGCAAGTTTACAGAGAGTTATTCGATGATGTTTCGATAGTGTACAATG
TATGAAGTGTGTTTTGAACTATTACATTTCTCTGCGATTTTGTATTATGC
CAATAGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029618XLOC_029618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046412-exon-scaffold_109-1491911889:82980..83638TCONS_00046412-exon-scaffold_109-1491911889:82980..83638Clytia hemisphaericaexon
TCONS_00046412-exon-scaffold_109-1510915933:82980..83638TCONS_00046412-exon-scaffold_109-1510915933:82980..83638Clytia hemisphaericaexon
TCONS_00046412-exon-scaffold_109-1575043694:82980..83638TCONS_00046412-exon-scaffold_109-1575043694:82980..83638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:82980..83638 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0788394	0	0.535596	0.174666	0.212639	0	0.304082	0.189785	0.930111	0.576046	0.638999	0.997626	0.524336	0.435623	0.805817	0.624553	0.295922	0.181986	0.251424	0.175398	0.381132	0.780792	0.723166	0.657463	0	0.226635	0.432418	0.115372	0.437528	1.42647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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