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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046387 ID=TCONS_00046387|Name=TCONS_00046387|organism=Clytia hemisphaerica|type=transcript|length=2092bp
CTTCAAAGCATGGAGGTAGAAATAAGACAGGAGATGATTGTTGTATTGCC
CCTATTTATTCCGAGCTCGCCCTACGGAAGTTGGAAATCAAAAGAATCTC
GTTCTTCTTGACATAGCGTTGATCGCGGGTTCATTCAAACTAAtcgcttt
tgattggttgaaattttgattgacaCGAATTTAAGATGGCGGAAGAAAGC
AAGCATGGGTTATTTTATGATGAAGAAATTGACTACTCTGCTGAAATAAA
TGACTATGAAGATATAGATTATGACAGTGATGTTGAAGCTCCAGAAGAAG
AACTTCACGAATTTTCACAATTTGAGAATCACGAAGTTGACCCTTCCTTG
TTTGAAGGCATTGATTTCAACGAGAATATATTTCAAGGGTTTGATGAGCC
AAACAGTGACTTGGAGATTGTTCCTCTAACTGTCAAATTTGTCTCTGATG
AAAGCATCAAACAAGTGAAAGAAAGTGATCAATCCACAGAACAAGACTCT
AGTAAAACTGTCTACATATGCCCAAAGTGTTCAAAGAAATATACAAGAca
ttaccattttgaaaatcatgTTAACAAACTTTGTACTGCTGGTAAATCGT
CTTCAAAATCAGGATTAGGATCAGGATTGGACGATCAATCTCAAAATAAA
GGGTTTCTCAAGACTACTCTGGACAATCTGAAACATTTGGATATCACAAA
TGAAGTGTTGACAAGCATAAAAGATGACCCAATGAATAATTTGAAGGTTG
GAGACAAACTCAGTCCTGGAAACTTGGTTGAcaattttgctgcaaaattA
CTTCAAAGCAAACAATCTAACGCCAAAAATTTTGAGGCAGCCTCGAGGAC
TTGGTAACCCAGATTTACGATATAATGGGTACACTTGGAAATCCTGATAA
AATTCTGATATGCAAAGATTCTACCGAAAGATCCATCTCTTCGCTCTTGA
GAAAGAGTCCTTTTGCTTATGAAAAAGACTTACACTTGAGCAGGAGGAAC
AAGTGTTTATGTCCCTGATGCATTCACTAACAATGGGAATTATCACTAAA
AttgttgatcaagaaaacaAGCTGTTGGCCTCAACAGACGTGCCAGCTTC
ACAAGAAGACCTTAAAATGACAAATGATGAGCAGAAAGTAGTTGCATACG
TTGGTGGTTACGTTATTGCTTCTTTAAGCAAGAAGTATTACCGCCTACTT
AAGTCACCCAAAGCTGAAACTCGAGATGCTGCTTCTGCTGCTTTGAAATT
ATTGAATTCACTAAAGTTTAAAGGCACCGAAGCAATTTCAAGAAACAGCT
TCCTTGAATTTACACGGAAATGGACTGAGATCCAGAATAGAGGAGGTTTG
GTGATAATTAATGATAACACATTCATTTTTATACGACGTGTGGAAAATGT
GGCACGTACAATATTAAACACCAAATTTTTACGTCGATATCATAATTAAG
ACTTGAGGGAGTTATTACGTGATAGAATAGAAAAAAGTCGTTTAGTTACA
TTAGCATGGAATGAACTGACCTCAAAATTGAGAAATGACTccctaaaaaa
tgttttgaggAAACAAATTATTGATAAATGGATCGATATACGCATCAATG
CATATGTCAGAGCATACGTCCAAATTTATAAAAGGAAAGCTACTATGGGA
AATGACGCAGAAAGTATATCACTTGGGCCAGAACCATCAATTAGAAAAAC
ATTGTATCAACATCAGTAGTACTGTTTCATATAATTGCCCATGAATTTTA
AAAAGTCTTTGGTTTTGACGCTTGAAAAAGACAGTATCAAATAGCTCTTT
TGATTTATATATACTAAACGAGTGcctattgatattttttgtttgataat
ttttcatgattttatcATCCTGTACGTGTAGATGTTATTATACATTTATT
CTCTGAGTAAAGTAACTGGAgatttttgaagtctttttttatttccatat
tttattaaaatattgtgcattttgcaacttttgaaaatatcatGTATGGT
ATTGAAGGTAAtcattcaaaagaatttttgaatttattttcattaccCTC
ATTGCATCATCTCATGGATTACTATGAAATGATTTGAGCTCG Run BLAST on NCBI protein sequence of TCONS_00046387-protein >TCONS_00046387-protein ID=TCONS_00046387-protein|Name=TCONS_00046387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MAEESKHGLFYDEEIDYSAEINDYEDIDYDSDVEAPEEELHEFSQFENHE
VDPSLFEGIDFNENIFQGFDEPNSDLEIVPLTVKFVSDESIKQVKESDQS
TEQDSSKTVYICPKCSKKYTRHYHFENHVNKLCTAGKSSSKSGLGSGLDD
QSQNKGFLKTTLDNLKHLDITNEVLTSIKDDPMNNLKVGDKLSPGNLVDN
FAAKLLQSKQSNAKNFEAASRTW Run BLAST on NCBI transcript from alignment at scaffold_109:359236..362019+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046387 ID=TCONS_00046387|Name=TCONS_00046387|organism=Clytia hemisphaerica|type=transcript|length=2784bp|location=Sequence derived from alignment at scaffold_109:359236..362019+ (Clytia hemisphaerica)
CTTCAAAGCATGGAGGTAGAAATAAGACAGGAGATGATTGTTGTATTGCC
CCTATTTATTCCGAGCTCGCCCTACGGAAGTTGGAAATCAAAAGAATCTC
GTTCTTCTTGACATAGCGTTGATCGCGGGTTCATTCAAACTAAtcgcttt
tgattggttgaaattttgattgacaCGAATTTAAGATGGCGGAAGAAAGC
AAGCATGGGTTATTTTATGATGAAGAAATTGACTACTCTGCTGAAATAAA
TGACTATGAAGATATAGATTATGACAGTGATGTTGAAGCTCCAGAAGAAG
AACTTCACGAATTTTCACAATTTGAGAATCACGAAGTTGACCCTTCCTTG
TTTGAAGGCATTGATTTCAACGAGAATATATTTCAAGGGTTTGATGAGCC
AAACAGTGACTTGGAGATTGTTCCTCTAACTGTCAAATTTGTCTCTGATG
AAAGCATCAAACAAGTGAAAGAAAGTGATCAATCCACAGAACAAGACTCT
AGTAAAACTGTCTACATATGCCCAAAGTGTTCAAAGAAATATACAAGAca
ttaccattttgaaaatcatgTTAACAAACTTTGTACTGCTGGTgagtatt
ttaaatttttgaaaaactgcaGAAAAAATATGTAGTGTTTTGTTTGAACT
GTGTATTCACAAGCAGTTTGGAATTTTGTTTGAATTCTTGCTTGGGGGTA
CTAACCGACCAATGCTATGAGGAGTTTTGCTATCCCTAAGCGCTAAGGTT
TAAAAGATGTACTTAATGTTTCTGTAGATTTTTGCTAAGATTTGTGAAAA
AAAAGTGATCCTGATTGGGAATGaataaattatgttaaaaattttcttga
aatgttcATATCTTAAAGAAGGACTGACTTTCAATTTTGATGATCTTTTG
GCTACCCTCTAAGACTTGACTGCTTGAAGAGGTGAAGAAACATCCTTGCA
TCCTATAATATCTTTGGCATAAGCTCCTTGCCTTGGCCAGTAGGGCTCAA
CAAATAAGCTAAGCTTCAACTGAAGACTTCTGGAAAATTGACTAGCAAAA
ATTATCAAtcttattttctacttttttttgtAGGTAAATCGTCTTCAAAA
TCAGGATTAGGATCAGGATTGGACGATCAATCTCAAAATAAAGGTAAAAA
ACTCTTAGACAGTGATGTATCGGTTATAAGTTTTCCCTCTAATTAATGTT
TGTGTCATTTAATGACATGATTGACCCATTTGTAAAGACCAAATCCCTTG
ACCAACCTATActgtgaaaaagggtaacttgcattgCGTCAAAACTTGTT
TGGttgaaatgttaaaatttttatttttattttcttatcaaaGGGTTTCT
CAAGACTACTCTGGACAATCTGAAACATTTGGATATCACAAATGAAGTGT
TGACAAGCATAAAAGATGACCCAATGAATAATTTGAAGGTTGGAGACAAA
CTCAGTCCTGGAAACTTGGTTGAcaattttgctgcaaaattACTTCAAAG
CAAACAATCTAACGCCAAAAATTTTGAGGCAGCCTCGAGGACTTGGTAAC
CCAGATTTACGATATAATGGGTACACTTGGAAATCCTGATAAAATTCTGA
TATGCAAAGATTCTACCGAAAGATCCATCTCTTCGCTCTTGAGAAAGAGT
CCTTTTGCTTATGAAAAAGACTTACACTTGAGCAGGAGGAACAAGTGTTT
ATGTCCCTGATGCATTCACTAACAATGGGAATTATCACTAAAAttgttga
tcaagaaaacaAGCTGTTGGCCTCAACAGACGTGCCAGCTTCACAAGAAG
ACCTTAAAATGACAAATGATGAGCAGAAAGTAGTTGCATACGTTGGTGGT
TACGTTATTGCTTCTTTAAGCAAGAAGTATTACCGCCTACTTAAGTCACC
CAAAGCTGAAACTCGAGATGCTGCTTCTGCTGCTTTGAAATTATTGAATT
CACTAAAGTTTAAAGGCACCGAAGCAATTTCAAGAAACAGCTTCCTTGAA
TTTACACGGAAATGGACTGAGATCCAGAATAGAGGAGGTTTGGTGATAAT
TAATGATAACACATTCATTTTTATACGACGTGTGGAAAATGTGGCACGTA
CAATATTAAACACCAAATTTTTACGTCGATATCATAATTAAGACTTGAGG
GAGTTATTACGTGATAGAATAGAAAAAAGTCGTTTAGTTACATTAGCATG
GAATGAACTGACCTCAAAATTGAGAAATGACTccctaaaaaatgttttga
ggAAACAAATTATTGATAAATGGATCGATATACGCATCAATGCATATGTC
AGAGCATACGTCCAAATTTATAAAAGGAAAGCTACTATGGGAAATGACGC
AGAAAGTATATCACTTGGGCCAGAACCATCAATTAGAAAAACATTGTATC
AACATCAGTAGTACTGTTTCATATAATTGCCCATGAATTTTAAAAAGTCT
TTGGTTTTGACGCTTGAAAAAGACAGTATCAAATAGCTCTTTTGATTTAT
ATATACTAAACGAGTGcctattgatattttttgtttgataatttttcatg
attttatcATCCTGTACGTGTAGATGTTATTATACATTTATTCTCTGAGT
AAAGTAACTGGAgatttttgaagtctttttttatttccatattttattaa
aatattgtgcattttgcaacttttgaaaatatcatGTATGGTATTGAAGG
TAAtcattcaaaagaatttttgaatttattttcattaccCTCATTGCATC
ATCTCATGGATTACTATGAAATGATTTGAGCTCG Coding sequence (CDS) from alignment at scaffold_109:359236..362019+ >TCONS_00046387 ID=TCONS_00046387|Name=TCONS_00046387|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_109:359236..362019+ (Clytia hemisphaerica)
ATGGCGGAAGAAAGCAAGCATGGGTTATTTTATGATGAAGAAATTGACTA
CTCTGCTGAAATAAATGACTATGAAGATATAGATTATGACAGTGATGTTG
AAGCTCCAGAAGAAGAACTTCACGAATTTTCACAATTTGAGAATCACGAA
GTTGACCCTTCCTTGTTTGAAGGCATTGATTTCAACGAGAATATATTTCA
AGGGTTTGATGAGCCAAACAGTGACTTGGAGATTGTTCCTCTAACTGTCA
AATTTGTCTCTGATGAAAGCATCAAACAAGTGAAAGAAAGTGATCAATCC
ACAGAACAAGACTCTAGTAAAACTGTCTACATATGCCCAAAGTGTTCAAA
GAAATATACAAGAcattaccattttgaaaatcatgTTAACAAACTTTGTA
CTGCTGGTAAATCGTCTTCAAAATCAGGATTAGGATCAGGATTGGACGAT
CAATCTCAAAATAAAGGGTTTCTCAAGACTACTCTGGACAATCTGAAACA
TTTGGATATCACAAATGAAGTGTTGACAAGCATAAAAGATGACCCAATGA
ATAATTTGAAGGTTGGAGACAAACTCAGTCCTGGAAACTTGGTTGAcaat
tttgctgcaaaattACTTCAAAGCAAACAATCTAACGCCAAAAATTTTGA
GGCAGCCTCGAGGACTTGGTAAATGGCGGAAGAAAGCAAGCATGGGTTAT
TTTATGATGAAGAAATTGACTACTCTGCTGAAATAAATGACTATGAAGAT
ATAGATTATGACAGTGATGTTGAAGCTCCAGAAGAAGAACTTCACGAATT
TTCACAATTTGAGAATCACGAAGTTGACCCTTCCTTGTTTGAAGGCATTG
ATTTCAACGAGAATATATTTCAAGGGTTTGATGAGCCAAACAGTGACTTG
GAGATTGTTCCTCTAACTGTCAAATTTGTCTCTGATGAAAGCATCAAACA
AGTGAAAGAAAGTGATCAATCCACAGAACAAGACTCTAGTAAAACTGTCT
ACATATGCCCAAAGTGTTCAAAGAAATATACAAGAcattaccattttgaa
aatcatgTTAACAAACTTTGTACTGCTGGTAAATCGTCTTCAAAATCAGG
ATTAGGATCAGGATTGGACGATCAATCTCAAAATAAAGGGTTTCTCAAGA
CTACTCTGGACAATCTGAAACATTTGGATATCACAAATGAAGTGTTGACA
AGCATAAAAGATGACCCAATGAATAATTTGAAGGTTGGAGACAAACTCAG
TCCTGGAAACTTGGTTGAcaattttgctgcaaaattACTTCAAAGCAAAC
AATCTAACGCCAAAAATTTTGAGGCAGCCTCGAGGACTTGGTAAATGGCG
GAAGAAAGCAAGCATGGGTTATTTTATGATGAAGAAATTGACTACTCTGC
TGAAATAAATGACTATGAAGATATAGATTATGACAGTGATGTTGAAGCTC
CAGAAGAAGAACTTCACGAATTTTCACAATTTGAGAATCACGAAGTTGAC
CCTTCCTTGTTTGAAGGCATTGATTTCAACGAGAATATATTTCAAGGGTT
TGATGAGCCAAACAGTGACTTGGAGATTGTTCCTCTAACTGTCAAATTTG
TCTCTGATGAAAGCATCAAACAAGTGAAAGAAAGTGATCAATCCACAGAA
CAAGACTCTAGTAAAACTGTCTACATATGCCCAAAGTGTTCAAAGAAATA
TACAAGAcattaccattttgaaaatcatgTTAACAAACTTTGTACTGCTG
GTAAATCGTCTTCAAAATCAGGATTAGGATCAGGATTGGACGATCAATCT
CAAAATAAAGGGTTTCTCAAGACTACTCTGGACAATCTGAAACATTTGGA
TATCACAAATGAAGTGTTGACAAGCATAAAAGATGACCCAATGAATAATT
TGAAGGTTGGAGACAAACTCAGTCCTGGAAACTTGGTTGAcaattttgct
gcaaaattACTTCAAAGCAAACAATCTAACGCCAAAAATTTTGAGGCAGC
CTCGAGGACTTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046387-exon-scaffold_109-1491911889:359236..359826 | TCONS_00046387-exon-scaffold_109-1491911889:359236..359826 | Clytia hemisphaerica | exon |
| TCONS_00046387-exon-scaffold_109-1510915933:359236..359826 | TCONS_00046387-exon-scaffold_109-1510915933:359236..359826 | Clytia hemisphaerica | exon |
| TCONS_00046387-exon-scaffold_109-1575043694:359236..359826 | TCONS_00046387-exon-scaffold_109-1575043694:359236..359826 | Clytia hemisphaerica | exon |
| TCONS_00046387-exon-scaffold_109-1491911889:360319..360378 | TCONS_00046387-exon-scaffold_109-1491911889:360319..360378 | Clytia hemisphaerica | exon |
| TCONS_00046387-exon-scaffold_109-1510915933:360319..360378 | TCONS_00046387-exon-scaffold_109-1510915933:360319..360378 | Clytia hemisphaerica | exon |
| TCONS_00046387-exon-scaffold_109-1575043694:360319..360378 | TCONS_00046387-exon-scaffold_109-1575043694:360319..360378 | Clytia hemisphaerica | exon |
| TCONS_00046387-exon-scaffold_109-1491911889:360579..362019 | TCONS_00046387-exon-scaffold_109-1491911889:360579..362019 | Clytia hemisphaerica | exon |
| TCONS_00046387-exon-scaffold_109-1510915933:360579..362019 | TCONS_00046387-exon-scaffold_109-1510915933:360579..362019 | Clytia hemisphaerica | exon |
| TCONS_00046387-exon-scaffold_109-1575043694:360579..362019 | TCONS_00046387-exon-scaffold_109-1575043694:360579..362019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:359236..362019 + |
Blast
The following BLAST results are available for this feature:
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