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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046383 ID=TCONS_00046383|Name=TCONS_00046383|organism=Clytia hemisphaerica|type=transcript|length=1212bp
AGAGAATGTTGGCCGCATCGACGCTGGTTTGGTGCACGCGTTATATGACT
ATGAAGGCCAGTACGAGGACGAGTTATCTTTCTATTGCGGTGATGAGTTA
ACTATCTTACGACGAGGTGACAACTCGGAGAAAGAGTGGTGGTGGGCTAG
AGACTGCAAAGGAAACATGGGATACATACCGTGCAATCTTGTAGGGGTAA
GTGTTTTACGGGCTCTCTTAATGACTTGACATTTCATCTAATAATTGGAA
AatgcagttgacgctctctagttCGATTTTCATCTAATAAGGGAGCATAT
TTAATAGTATGGCGTTGTTTAAGAGAGTTTCTTGTTAATGGCGGCTTTCA
CTTCAGTATTATCGAATAACAagacgtcgaattagagagcaacAACtgta
ttcaaaaaaatatttttaccccGGATCCCCAAGTTGAGGAGGTTGAGTTT
TCCACCATAGTAATGCTCCTCCAAAAGCCTGGAAATTCTAGGGAAATCAT
cttaaagatgagaaaaaactaGATGTTTGCTTGCAACATGGGGTAGTGAA
GTCTATTTCTGGATTAGCATTTTCGAGGTTTGAGGATGTCTCGTCAATCT
CAAGTAATATGGTTCATATTGTTCTCTAATTAAGTTTATCTCTTTTCCGT
TCTTAGAATTACCACCGTATTTCTGCTGCTGTGTAATGGGGCCATGTTCA
AAGAGAGAATGATCGAACGTGGTTGAATATGTCAATATAAAATTTCTAGT
tggaaaaaacaaaatgaaaatattcaaaataaatccACTATATAAGGACA
CACCTAAGTGATTGAAGTAGCGTCTTTGTTATGGGCCCTTTTCTCAATGC
TTCTAAAGTGAAAATACTTGCCAATTTCAACTTTTCCAATGatagaaaaa
tagaaagaattatcctcaaattttatttttgtacgattttattgttatta
ttatcatttGTATTATTATCCCACCTAATATTTTagtattttgaaataaa
aaaacctaaaattcATTTAAGCCAAAACTCCTCTTCCTTTTCACACTAAC
ACCCACTTTCATTTATATAtaatgaaattcttttttcttgtaaattttag
aatccaattttttttcttgtagaacttttttttgttttgacaatAAAATC
AGAATCTTGTacagttttttatattttatcagTTTTATTTTCTGAATAGA
TGTAGCGATAAG Run BLAST on NCBI transcript from alignment at scaffold_109:289990..291201+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046383 ID=TCONS_00046383|Name=TCONS_00046383|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at scaffold_109:289990..291201+ (Clytia hemisphaerica)
AGAGAATGTTGGCCGCATCGACGCTGGTTTGGTGCACGCGTTATATGACT
ATGAAGGCCAGTACGAGGACGAGTTATCTTTCTATTGCGGTGATGAGTTA
ACTATCTTACGACGAGGTGACAACTCGGAGAAAGAGTGGTGGTGGGCTAG
AGACTGCAAAGGAAACATGGGATACATACCGTGCAATCTTGTAGGGGTAA
GTGTTTTACGGGCTCTCTTAATGACTTGACATTTCATCTAATAATTGGAA
AatgcagttgacgctctctagttCGATTTTCATCTAATAAGGGAGCATAT
TTAATAGTATGGCGTTGTTTAAGAGAGTTTCTTGTTAATGGCGGCTTTCA
CTTCAGTATTATCGAATAACAagacgtcgaattagagagcaacAACtgta
ttcaaaaaaatatttttaccccGGATCCCCAAGTTGAGGAGGTTGAGTTT
TCCACCATAGTAATGCTCCTCCAAAAGCCTGGAAATTCTAGGGAAATCAT
cttaaagatgagaaaaaactaGATGTTTGCTTGCAACATGGGGTAGTGAA
GTCTATTTCTGGATTAGCATTTTCGAGGTTTGAGGATGTCTCGTCAATCT
CAAGTAATATGGTTCATATTGTTCTCTAATTAAGTTTATCTCTTTTCCGT
TCTTAGAATTACCACCGTATTTCTGCTGCTGTGTAATGGGGCCATGTTCA
AAGAGAGAATGATCGAACGTGGTTGAATATGTCAATATAAAATTTCTAGT
tggaaaaaacaaaatgaaaatattcaaaataaatccACTATATAAGGACA
CACCTAAGTGATTGAAGTAGCGTCTTTGTTATGGGCCCTTTTCTCAATGC
TTCTAAAGTGAAAATACTTGCCAATTTCAACTTTTCCAATGatagaaaaa
tagaaagaattatcctcaaattttatttttgtacgattttattgttatta
ttatcatttGTATTATTATCCCACCTAATATTTTagtattttgaaataaa
aaaacctaaaattcATTTAAGCCAAAACTCCTCTTCCTTTTCACACTAAC
ACCCACTTTCATTTATATAtaatgaaattcttttttcttgtaaattttag
aatccaattttttttcttgtagaacttttttttgttttgacaatAAAATC
AGAATCTTGTacagttttttatattttatcagTTTTATTTTCTGAATAGA
TGTAGCGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046383-exon-scaffold_109-1491911889:289990..291201 | TCONS_00046383-exon-scaffold_109-1491911889:289990..291201 | Clytia hemisphaerica | exon |
| TCONS_00046383-exon-scaffold_109-1510915933:289990..291201 | TCONS_00046383-exon-scaffold_109-1510915933:289990..291201 | Clytia hemisphaerica | exon |
| TCONS_00046383-exon-scaffold_109-1575043694:289990..291201 | TCONS_00046383-exon-scaffold_109-1575043694:289990..291201 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:289990..291201 + |
Blast
BLAST of TCONS_00046383 vs. Swiss-Prot (Human)
Match: ASPP1 (Apoptosis-stimulating of p53 protein 1 OS=Homo sapiens GN=PPP1R13B PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 1.092e-16 Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 2
Query: 2 ENVGRIDAGLVHALYDYEGQYEDELSFYCGDELTILRRGDNSEKEWWWARDCKGNMGYIPCNLVGV 199
E +G ++ G+ +AL+DYE Q DELSF+ GD LTILRR D SE EWWWAR GY+P NL+G+
Sbjct: 1014 EKLGVMNKGVAYALWDYEAQNSDELSFHEGDALTILRRKDESETEWWWAR-LGDREGYVPKNLLGL 1078
The following BLAST results are available for this feature:
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