TCONS_00046380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046380
Unique NameTCONS_00046380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046380 ID=TCONS_00046380|Name=TCONS_00046380|organism=Clytia hemisphaerica|type=transcript|length=1433bp
TGGGTTCGTCCAGATGAATGGTTTGGACAAACGGAAGAAATTTCCACATC
AGcatcaaaaagtgaagaaaattcCCTCTCCTGATGCCTCTAGTGGTaat
ggtgacgtcaccatcaATAAATACCTCGATGGAGGTATCAATCGAGCCCA
ACTGACGCTACAAGAGCTTCAAAGTCTTGCGGAGAGACAACGCGAACAGA
TCTTGTACAACAGTCAAGAACTTAtggaaaaacaacaacaacttaTGAAA
ATGCACCACGATTATCGAGCAAAACTCAAAGCACAACAAGAAAATAATCG
CTCTGTCCCTAAAGGGTTGAAAGCACACGAAAACCACACAACACATACTT
CACTTCCACAATCACCCATGGCTCCCCATAGAACCAACCGTTCCCGCCCC
TCCAAAGGCGGTGTGGATCAAGACCAGTACGCGAAAATGTTGAGGGCGAC
TTATCAGAATATGGGGCGGATACAGAGCAAGAACCAAATGCAACATAATT
TAGATGTCAAGAAGTTTAACAACACTGAACTTACTCACGAGTTAGAGAAA
GTACGTGCGGCTTTCGCTGCCAAACAAAACGAACTAGCAGACGCGGTTAA
GAAAGTAGACGTATTAACACACGAGCTAGAGCAACGTAAGAACGGAGAAA
ACCATCCGTCCGTACCGACTCCCGAACGAATCAATCGACGCAAGAAGATT
CAAAACGCCAAAGATGAATTGTATAGACTCCAAAGTGAACTCATTATTCG
AAACGAGATGAATTCTCAGCAAAGCCATCAGCTTCAACTACAACGTGACA
TCATCCAGGAAAAGAAACAAGAACTCAAAATGCTCAACATCAGAATGGCC
GAACTCGGTAACGCTTTACGCCGCCAACACGGAAGTGGGTTTGACCCACG
TCGCTCCATGTCCTACGGGAAACAATCGCCGGGACTTTTTAACGGAACTT
ATTTACAAGACACTCTAAGTCGGCGCAAACTCAACAACAATAACAGTAAA
CCGCCGCCAGGACAACGTGACGTCAACGCTAATATTGTTCCCAGTCCTTC
GAAAGACCAACAACAAACGGAGCGTTCAGaagcgatgacgtcatcgccaT
CTACGCAACATTTACGTAACGGAATGGTCAATGGCGGACATTCATCTAGC
AGTAAATCGAAATCGAACTTTGAAGATGCTCCAGTGTCCGGGAACCAGGT
TTGGCGAACTGACCCGAAGAAGAGTTTGAACTTTGACAACCAACCACAAC
AGAAATCCTCTCCTCTCCATTCGCCTGCATCCTCTATCTCATCTCTTTCT
TCACTCTCCTCTGCTTCCGCTACTCCTGATGAATCAGCACCCTCGAATAA
ACCAGCTTTCCCCTTTAAAGAGGCTCCACCGGCGCCGCCAACCCGCACCA
CACCCGTAGGGGTCTTAATCGATCACAACGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_109:282853..286107+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046380 ID=TCONS_00046380|Name=TCONS_00046380|organism=Clytia hemisphaerica|type=transcript|length=3255bp|location=Sequence derived from alignment at scaffold_109:282853..286107+ (Clytia hemisphaerica)
TGGGTTCGTCCAGATGAATGGTTTGGACAAACGGAAGAAATTTCCACATC
AGcatcaaaaagtgaagaaaattcCCTCTCCTGATGCCTCTAGTGGTaat
ggtgacgtcaccatcaATAAATACCTCGATGGAGTACGTGAATTCGATTG
AATCTACTGCAGCTGTTTTTGACAGAATTTGAATTGCTAAGAAAAACTTT
TAATGCTATTCACATCCATTTCTATGACGACTTATAAATGACGAACTATA
AATTGAGACTGCAACCTAAAGAAATTTAGTTGATCCTAGCTTAATGATAA
AAATGCTATGTACTTTATACTTAAAGACTACAACTTCAAACCCTAACAAC
GTATTATAAACTGTTCTACCAAACGCGATGACTTATTTTTGATTTCGTAA
GACGGAAAGAGAAATTGACCTTTTATATAAAAAGGGTGAAAATTCTCTTC
ACACTGAAAACCGCATTGACCGACCACTGTCGAGACAGTCACACAATAaa
cttgttttgatattttttcttttttcctttgaaTTGAATCTCTCTCGCAC
AAAATAGTctgtttgtttcaaaattttaagaagaaatcTACCGTCTAATA
accttgtaaaaaaattcaccttttaaACCTTCCTTTCTCTTCTTGCTAAT
TTCCAGGGTATCAATCGAGCCCAACTGACGCTACAAGAGCTTCAAAGTCT
TGCGGAGAGACAACGCGAACAGATCTTGTACAACAGTCAAGAACTTAtgg
aaaaacaacaacaacttaTGAAAATGCACCACGATTATCGAGCAAAACTC
AAAGCACAACAAGAAAATAATCGCTCTGTCCCTAAAGGGTTGAAAGTAAG
TAGTGACTGAATATTCCCATAAACATTTATTGACCATAGAACTTCAAAAT
CTCGGTAATACCATTATTGCAGGGGCTATACCCTCCACTGGAAATCTTAT
CAAAATGTTTAGTTCGACTGAGATATTTTTTGCTGGTTTTCTAGTTATGT
AACGTCATAAACAAAAAGCAAACTAAGGCTATTTCTCTTTTATCTTTTAG
GCACACGAAAACCACACAACACATACTTCACTTCCACAATCACCCATGGC
TCCCCATAGAACCAACCGTTCCCGCCCCTCCAAAGGCGGTGTGGATCAAG
ACCAGTACGCGAAAATGTTGAGGGCGACTTATCAGAATATGGGGCGGATA
CAGAGCAAGAACCAAATGCAACATAATTTAGATGTCAAGAAGTTTAACAA
CACTGAACTTAGTAcgaacttcttttttttcataatcCCGAGATTGTATT
ATGGCCTTTCTTTTTCGGTAATTTCACAAcaacgtgttttttttttcaca
ctttcacaatgctggacaaaaggttgtagacacatgaaatttcagtgaaa
aatgatgagaaatagNacaatgccggacaaaaggttgtagacacatgaaa
tttcagtgaaaaatgatgagaaatagagcaaaatgactcttcaatgtgtc
tgaaaggggatggaaattaagaaaaacacttttgaagccgTTGCATCGcc
tttgaattgcttttgagcgaaccacaagcaaaaaatcagcgttttgatat
tggtgtaagccagttaatcaagcccttgtggtttgcccttgcggttagac
tgtgGGTgatgaaagactttgaaagactttggatGGGTTTGGATGGGCtt
ggatgggtttggaaagcacccagaacttgtttttgatcgatattgaagta
ttttgcaaaccttttgtccagcattgcaTGTTATCTTGTACTCGTTTTCC
TGGAACATCACTCTCGACAGTCTAGACCATGCAGAACATGCtcttaattt
tttcttccttatgTTACAGCTCACGAGTTAGAGAAAGTACGTGCGGCTTT
CGCTGCCAAACAAAACGAACTAGCAGACGCGGTTAAGAAAGTAGACGTAT
TAACACACGAGCTAGAGCAACGTAAGAACGGAGAAAACCATCCGTCCGTA
CCGACTCCCGAACGAATCAATCGACGCAAGAAGATTCAAAACGCCAAAGA
TGAATTGTATAGACTCCAAAGTGAACTCATTGTATGTCAAATGCTTTTCA
ATAATCCTTTCTCTTTTATACCTGTTACAGTTCTCTACTACCTCCTGTAG
TGATATTTCACGCATTAGATCGGGCatataccgggtgtcccagaaaaaag
ttccgctctttgaagtgaaNTGATCAAGTTGacttaatttaataaatgac
ccctcaaaatttaagtttatccttcctctttccaatgcaaaaagattcat
tatctaaaagttcatagaacttgagaaaattcacttcaaagagcggaact
tttttctgggacacccggtatataTTAATTTCTACGTAGGATACTGCACT
CTTCTTCTCTTAGCTTTGTCTGGCCGTAGTTTCTAACCCCTGTATTACGT
ACAATGTTTGTGTTGCATGTACAATGTTTGTGTTGCATGACCCAATTAGC
GAGAAAATAATCCCGCAAATTATCCTAGTTCTAAAATCTAGATTCTTTAC
ACCCTCATCCATTCCAGATTCGAAACGAGATGAATTCTCAGCAAAGCCAT
CAGCTTCAACTACAACGTGACATCATCCAGGAAAAGAAACAAGAACTCAA
AATGCTCAACATCAGAATGGCCGAACTCGGTAACGCTTTACGCCGCCAAC
ACGGAAGTGGGTTTGACCCACGTCGCTCCATGTCCTACGGGAAACAATCG
CCGGGACTTTTTAACGGAACTTATTTACAAGACACTCTAAGTCGGCGCAA
ACTCAACAACAATAACAGTAAACCGCCGCCAGGACAACGTGACGTCAACG
CTAATATTGTTCCCAGTCCTTCGAAAGACCAACAACAAACGGAGCGTTCA
GaagcgatgacgtcatcgccaTCTACGCAACATTTACGTAACGGAATGGT
CAATGGCGGACATTCATCTAGCAGTAAATCGAAATCGAACTTTGAAGATG
CTCCAGTGTCCGGGAACCAGGTTTGGCGAACTGACCCGAAGAAGAGTTTG
AACTTTGACAACCAACCACAACAGAAATCCTCTCCTCTCCATTCGCCTGC
ATCCTCTATCTCATCTCTTTCTTCACTCTCCTCTGCTTCCGCTACTCCTG
ATGAATCAGCACCCTCGAATAAACCAGCTTTCCCCTTTAAAGAGGCTCCA
CCGGCGCCGCCAACCCGCACCACACCCGTAGGGGTCTTAATCGATCACAA
CGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029599XLOC_029599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046380-exon-scaffold_109-1491911889:282853..282985TCONS_00046380-exon-scaffold_109-1491911889:282853..282985Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1510915933:282853..282985TCONS_00046380-exon-scaffold_109-1510915933:282853..282985Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1575043694:282853..282985TCONS_00046380-exon-scaffold_109-1575043694:282853..282985Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1491911889:283509..283697TCONS_00046380-exon-scaffold_109-1491911889:283509..283697Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1510915933:283509..283697TCONS_00046380-exon-scaffold_109-1510915933:283509..283697Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1575043694:283509..283697TCONS_00046380-exon-scaffold_109-1575043694:283509..283697Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1491911889:283903..284113TCONS_00046380-exon-scaffold_109-1491911889:283903..284113Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1510915933:283903..284113TCONS_00046380-exon-scaffold_109-1510915933:283903..284113Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1575043694:283903..284113TCONS_00046380-exon-scaffold_109-1575043694:283903..284113Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1491911889:284722..284933TCONS_00046380-exon-scaffold_109-1491911889:284722..284933Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1510915933:284722..284933TCONS_00046380-exon-scaffold_109-1510915933:284722..284933Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1575043694:284722..284933TCONS_00046380-exon-scaffold_109-1575043694:284722..284933Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1491911889:285420..286107TCONS_00046380-exon-scaffold_109-1491911889:285420..286107Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1510915933:285420..286107TCONS_00046380-exon-scaffold_109-1510915933:285420..286107Clytia hemisphaericaexon
TCONS_00046380-exon-scaffold_109-1575043694:285420..286107TCONS_00046380-exon-scaffold_109-1575043694:285420..286107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:282853..286107 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.523781	0.271341	0.610102	0	1.31036	0.612273	8.53357	12.2061	2.22288	5.37211	2.09662	2.58111	12.8522	6.51242	4.10451	10.7203	12.5272	22.6646	12.7105	14.135	5.05137	6.01465	1.10442	2.45277	10.3512	11.6023	19.3825	9.85781	23.0853	24.1213
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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