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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046380 ID=TCONS_00046380|Name=TCONS_00046380|organism=Clytia hemisphaerica|type=transcript|length=1433bp TGGGTTCGTCCAGATGAATGGTTTGGACAAACGGAAGAAATTTCCACATC AGcatcaaaaagtgaagaaaattcCCTCTCCTGATGCCTCTAGTGGTaat ggtgacgtcaccatcaATAAATACCTCGATGGAGGTATCAATCGAGCCCA ACTGACGCTACAAGAGCTTCAAAGTCTTGCGGAGAGACAACGCGAACAGA TCTTGTACAACAGTCAAGAACTTAtggaaaaacaacaacaacttaTGAAA ATGCACCACGATTATCGAGCAAAACTCAAAGCACAACAAGAAAATAATCG CTCTGTCCCTAAAGGGTTGAAAGCACACGAAAACCACACAACACATACTT CACTTCCACAATCACCCATGGCTCCCCATAGAACCAACCGTTCCCGCCCC TCCAAAGGCGGTGTGGATCAAGACCAGTACGCGAAAATGTTGAGGGCGAC TTATCAGAATATGGGGCGGATACAGAGCAAGAACCAAATGCAACATAATT TAGATGTCAAGAAGTTTAACAACACTGAACTTACTCACGAGTTAGAGAAA GTACGTGCGGCTTTCGCTGCCAAACAAAACGAACTAGCAGACGCGGTTAA GAAAGTAGACGTATTAACACACGAGCTAGAGCAACGTAAGAACGGAGAAA ACCATCCGTCCGTACCGACTCCCGAACGAATCAATCGACGCAAGAAGATT CAAAACGCCAAAGATGAATTGTATAGACTCCAAAGTGAACTCATTATTCG AAACGAGATGAATTCTCAGCAAAGCCATCAGCTTCAACTACAACGTGACA TCATCCAGGAAAAGAAACAAGAACTCAAAATGCTCAACATCAGAATGGCC GAACTCGGTAACGCTTTACGCCGCCAACACGGAAGTGGGTTTGACCCACG TCGCTCCATGTCCTACGGGAAACAATCGCCGGGACTTTTTAACGGAACTT ATTTACAAGACACTCTAAGTCGGCGCAAACTCAACAACAATAACAGTAAA CCGCCGCCAGGACAACGTGACGTCAACGCTAATATTGTTCCCAGTCCTTC GAAAGACCAACAACAAACGGAGCGTTCAGaagcgatgacgtcatcgccaT CTACGCAACATTTACGTAACGGAATGGTCAATGGCGGACATTCATCTAGC AGTAAATCGAAATCGAACTTTGAAGATGCTCCAGTGTCCGGGAACCAGGT TTGGCGAACTGACCCGAAGAAGAGTTTGAACTTTGACAACCAACCACAAC AGAAATCCTCTCCTCTCCATTCGCCTGCATCCTCTATCTCATCTCTTTCT TCACTCTCCTCTGCTTCCGCTACTCCTGATGAATCAGCACCCTCGAATAA ACCAGCTTTCCCCTTTAAAGAGGCTCCACCGGCGCCGCCAACCCGCACCA CACCCGTAGGGGTCTTAATCGATCACAACGAAC Run BLAST on NCBI transcript from alignment at scaffold_109:282853..286107+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046380 ID=TCONS_00046380|Name=TCONS_00046380|organism=Clytia hemisphaerica|type=transcript|length=3255bp|location=Sequence derived from alignment at scaffold_109:282853..286107+ (Clytia hemisphaerica) TGGGTTCGTCCAGATGAATGGTTTGGACAAACGGAAGAAATTTCCACATC
AGcatcaaaaagtgaagaaaattcCCTCTCCTGATGCCTCTAGTGGTaat
ggtgacgtcaccatcaATAAATACCTCGATGGAGTACGTGAATTCGATTG
AATCTACTGCAGCTGTTTTTGACAGAATTTGAATTGCTAAGAAAAACTTT
TAATGCTATTCACATCCATTTCTATGACGACTTATAAATGACGAACTATA
AATTGAGACTGCAACCTAAAGAAATTTAGTTGATCCTAGCTTAATGATAA
AAATGCTATGTACTTTATACTTAAAGACTACAACTTCAAACCCTAACAAC
GTATTATAAACTGTTCTACCAAACGCGATGACTTATTTTTGATTTCGTAA
GACGGAAAGAGAAATTGACCTTTTATATAAAAAGGGTGAAAATTCTCTTC
ACACTGAAAACCGCATTGACCGACCACTGTCGAGACAGTCACACAATAaa
cttgttttgatattttttcttttttcctttgaaTTGAATCTCTCTCGCAC
AAAATAGTctgtttgtttcaaaattttaagaagaaatcTACCGTCTAATA
accttgtaaaaaaattcaccttttaaACCTTCCTTTCTCTTCTTGCTAAT
TTCCAGGGTATCAATCGAGCCCAACTGACGCTACAAGAGCTTCAAAGTCT
TGCGGAGAGACAACGCGAACAGATCTTGTACAACAGTCAAGAACTTAtgg
aaaaacaacaacaacttaTGAAAATGCACCACGATTATCGAGCAAAACTC
AAAGCACAACAAGAAAATAATCGCTCTGTCCCTAAAGGGTTGAAAGTAAG
TAGTGACTGAATATTCCCATAAACATTTATTGACCATAGAACTTCAAAAT
CTCGGTAATACCATTATTGCAGGGGCTATACCCTCCACTGGAAATCTTAT
CAAAATGTTTAGTTCGACTGAGATATTTTTTGCTGGTTTTCTAGTTATGT
AACGTCATAAACAAAAAGCAAACTAAGGCTATTTCTCTTTTATCTTTTAG
GCACACGAAAACCACACAACACATACTTCACTTCCACAATCACCCATGGC
TCCCCATAGAACCAACCGTTCCCGCCCCTCCAAAGGCGGTGTGGATCAAG
ACCAGTACGCGAAAATGTTGAGGGCGACTTATCAGAATATGGGGCGGATA
CAGAGCAAGAACCAAATGCAACATAATTTAGATGTCAAGAAGTTTAACAA
CACTGAACTTAGTAcgaacttcttttttttcataatcCCGAGATTGTATT
ATGGCCTTTCTTTTTCGGTAATTTCACAAcaacgtgttttttttttcaca
ctttcacaatgctggacaaaaggttgtagacacatgaaatttcagtgaaa
aatgatgagaaatagNacaatgccggacaaaaggttgtagacacatgaaa
tttcagtgaaaaatgatgagaaatagagcaaaatgactcttcaatgtgtc
tgaaaggggatggaaattaagaaaaacacttttgaagccgTTGCATCGcc
tttgaattgcttttgagcgaaccacaagcaaaaaatcagcgttttgatat
tggtgtaagccagttaatcaagcccttgtggtttgcccttgcggttagac
tgtgGGTgatgaaagactttgaaagactttggatGGGTTTGGATGGGCtt
ggatgggtttggaaagcacccagaacttgtttttgatcgatattgaagta
ttttgcaaaccttttgtccagcattgcaTGTTATCTTGTACTCGTTTTCC
TGGAACATCACTCTCGACAGTCTAGACCATGCAGAACATGCtcttaattt
tttcttccttatgTTACAGCTCACGAGTTAGAGAAAGTACGTGCGGCTTT
CGCTGCCAAACAAAACGAACTAGCAGACGCGGTTAAGAAAGTAGACGTAT
TAACACACGAGCTAGAGCAACGTAAGAACGGAGAAAACCATCCGTCCGTA
CCGACTCCCGAACGAATCAATCGACGCAAGAAGATTCAAAACGCCAAAGA
TGAATTGTATAGACTCCAAAGTGAACTCATTGTATGTCAAATGCTTTTCA
ATAATCCTTTCTCTTTTATACCTGTTACAGTTCTCTACTACCTCCTGTAG
TGATATTTCACGCATTAGATCGGGCatataccgggtgtcccagaaaaaag
ttccgctctttgaagtgaaNTGATCAAGTTGacttaatttaataaatgac
ccctcaaaatttaagtttatccttcctctttccaatgcaaaaagattcat
tatctaaaagttcatagaacttgagaaaattcacttcaaagagcggaact
tttttctgggacacccggtatataTTAATTTCTACGTAGGATACTGCACT
CTTCTTCTCTTAGCTTTGTCTGGCCGTAGTTTCTAACCCCTGTATTACGT
ACAATGTTTGTGTTGCATGTACAATGTTTGTGTTGCATGACCCAATTAGC
GAGAAAATAATCCCGCAAATTATCCTAGTTCTAAAATCTAGATTCTTTAC
ACCCTCATCCATTCCAGATTCGAAACGAGATGAATTCTCAGCAAAGCCAT
CAGCTTCAACTACAACGTGACATCATCCAGGAAAAGAAACAAGAACTCAA
AATGCTCAACATCAGAATGGCCGAACTCGGTAACGCTTTACGCCGCCAAC
ACGGAAGTGGGTTTGACCCACGTCGCTCCATGTCCTACGGGAAACAATCG
CCGGGACTTTTTAACGGAACTTATTTACAAGACACTCTAAGTCGGCGCAA
ACTCAACAACAATAACAGTAAACCGCCGCCAGGACAACGTGACGTCAACG
CTAATATTGTTCCCAGTCCTTCGAAAGACCAACAACAAACGGAGCGTTCA
GaagcgatgacgtcatcgccaTCTACGCAACATTTACGTAACGGAATGGT
CAATGGCGGACATTCATCTAGCAGTAAATCGAAATCGAACTTTGAAGATG
CTCCAGTGTCCGGGAACCAGGTTTGGCGAACTGACCCGAAGAAGAGTTTG
AACTTTGACAACCAACCACAACAGAAATCCTCTCCTCTCCATTCGCCTGC
ATCCTCTATCTCATCTCTTTCTTCACTCTCCTCTGCTTCCGCTACTCCTG
ATGAATCAGCACCCTCGAATAAACCAGCTTTCCCCTTTAAAGAGGCTCCA
CCGGCGCCGCCAACCCGCACCACACCCGTAGGGGTCTTAATCGATCACAA
CGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046380-exon-scaffold_109-1491911889:282853..282985 | TCONS_00046380-exon-scaffold_109-1491911889:282853..282985 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1510915933:282853..282985 | TCONS_00046380-exon-scaffold_109-1510915933:282853..282985 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1575043694:282853..282985 | TCONS_00046380-exon-scaffold_109-1575043694:282853..282985 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1491911889:283509..283697 | TCONS_00046380-exon-scaffold_109-1491911889:283509..283697 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1510915933:283509..283697 | TCONS_00046380-exon-scaffold_109-1510915933:283509..283697 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1575043694:283509..283697 | TCONS_00046380-exon-scaffold_109-1575043694:283509..283697 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1491911889:283903..284113 | TCONS_00046380-exon-scaffold_109-1491911889:283903..284113 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1510915933:283903..284113 | TCONS_00046380-exon-scaffold_109-1510915933:283903..284113 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1575043694:283903..284113 | TCONS_00046380-exon-scaffold_109-1575043694:283903..284113 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1491911889:284722..284933 | TCONS_00046380-exon-scaffold_109-1491911889:284722..284933 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1510915933:284722..284933 | TCONS_00046380-exon-scaffold_109-1510915933:284722..284933 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1575043694:284722..284933 | TCONS_00046380-exon-scaffold_109-1575043694:284722..284933 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1491911889:285420..286107 | TCONS_00046380-exon-scaffold_109-1491911889:285420..286107 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1510915933:285420..286107 | TCONS_00046380-exon-scaffold_109-1510915933:285420..286107 | Clytia hemisphaerica | exon |
TCONS_00046380-exon-scaffold_109-1575043694:285420..286107 | TCONS_00046380-exon-scaffold_109-1575043694:285420..286107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_109 | supercontig | scaffold_109:282853..286107 + |
Blast
The following BLAST results are available for this feature:
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