|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046349 ID=TCONS_00046349|Name=TCONS_00046349|organism=Clytia hemisphaerica|type=transcript|length=486bp
ttaaggctAATGCAAACCATGCAAATAGCAAATAAATGGACTGATCCATG
ACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGGACCACGCAG
GGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGTAAAGAGATTGGGA
AAAAATGGAGATTGATGAGATaaagattgagtttaatgatgTACATGAAT
CGCCCATGGAACATGAAGTTCCTGCTCAAGCCCTCATGACATTGCACGAT
TCTGTACAAAACATGCCAAGTAAACAAAAGTCAGCTCTACAGGAAGCAGT
AGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGACA
ATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTACGAACCTAGATCT
CTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGAATAAAAACTA
CACCTCAATTAAAAACACTTTGAAGCAATCATCCGG Run BLAST on NCBI transcript from alignment at scaffold_109:70689..77012+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046349 ID=TCONS_00046349|Name=TCONS_00046349|organism=Clytia hemisphaerica|type=transcript|length=6324bp|location=Sequence derived from alignment at scaffold_109:70689..77012+ (Clytia hemisphaerica)
ttaaggctAATGCAAACCATGCAAATAGCAAATAAATGGACTGATCCATG
ACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGGACCACGCAG
GGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGGTAAACTTTGAATT
TTTAGCAGTCCAGCTTTCTGTGCGATTTTGAGCTTCGCTGCGAAACGCAA
CCAGAAAGAGAAAACAAGACCCCTCCTGTTTTAACCAGTCAAGTACCAGA
CAGtactaattgataaatttgatTATCCAAACAAAGTAATCGAtaaggcc
aggcccaattgattgtttggttcgtgtcctagaAGCTTTGATAAATGGGT
TGGTccgtcagtcggtcggtcggtagctaAAGGCTAAAGATggaacattt
tttcattttcccaccaaaaacctccatttttgaaattcctcaaGCAATCG
CGCAATTCTAGAATCCAACCACGACTGTAAAGAAATAGCCTAAAGCCCGG
ATCCTCAAAGGCCAAGgcacgcgctgcgatcgcaaGATAACTTCTAGTTG
AAGATTAAGACGTTTGCGGCGTGTGCTTTAAAGGAATATAGCTGTAGACT
CTCTCTGCTTTTTAGGTGTTGATATTTGTTTTTACNGAAAAGGTCTATAC
AGCTGTAGACTCTCTCTGCTTTTTAGGTGcttgatatttgtttttaagta
ccCCCGTGGGTTACACCGGGACATTTTCTGTGCACAAAGTGGATGTTGTT
TATAGAAGAATCAAAGCAGTCAGttataaaaaaagaacagcAGAGATAGT
AGTTATCATGTGAAAAGGaggtagaatttttttgatttttcctactcaaa
gtgaaacactttttctcaaaaatttacaGTTGGTTggaggacacgaacca
aactgTCAAttgcagtgctgcaaataacggccggtgaccggtaattaccg
gtcattttTAAGCTAATATGTGTGTTTTTTCCCGAGAAATTTTGATGGTT
TCATTGTTAGTGATTTCTGATTGAGTAATCACCGTCCAAATTGAAattcc
ttatttgcagcactgaatTGGGCCTGCCCTAATGATCAAAGTAATCGAAC
GACTATTTATcgtttatcaaattttgagtaccaaaatttcaaaaacattg
tgAGTCTTCGATCACTTTCTTAATAAATTATCGGAGAGTAtatatagacc
taactcttcatacaaaactTACcagaaacgcatatttggactttgtaccc
tatgctgcacacaagcacttaagccaaagtcctgcaaaggcgggacaaaa
atcagaagtttgcaaaaaacgcCACGTacaagatctttcaaattcagtat
gcgaatagagcagtaaaaaatacaacttttcctatttttcttattttttg
caaaagttctaggaacgAAAATAAAGGGATATATCCGCTGATGATCCGCG
GTGCCAACTATTGTAACAATAACCAtttgagtactttgattgttattgat
tacttccgataacttcgataaccaattgattacttcgataaccAATACCG
ATACCTTGGAaaaaggcgctgtggtatagtggtcattgaccttggttact
gcacaggcgactgaggttcgattcccactcgcagcggttcacttggcaag
tgaatgaacccatgccatgtgaggggaattgggtagtcagtccaaggtgc
tggcggggcgctcattgaaagcgtctatagttgcgaaaataggcctcaaa
gcctcctgcaactcaaccaaatagaaaaatagaaataggaaaaaccaaaa
acagTGACCTAAAACCAAACCACAAAAAGAAGCCATAAGAATCACCTTCA
GTACTTCCCCGTTTTGAATGTGCTTGCTCTGGGTTTCCTTAAATAAACCA
AATCACGCATTTTGATTGGTCGGAGAGAGCAAAAGTGGTTTTCCCACGTA
AATCGCGTGTTTTTATTGTACAAAATAAACTATTTTATTGGACGAGATGA
ACTCAGTTTCAGATTCCATCGCTTTGCTACAGGAAGCATATCCGACACaa
tcgaaggtattcaatatgatcgaaagTGATTGAACATACAATCaaacaaa
tcgaaaatggtCAAAGAAAATGCCATGATTAAGAGTTGAGGGATTATTCA
ATCACCGATAGAATCAATAAGTGGTCACTGATCaccttcgattattatcg
atcattattgattacttcgatcacaatcgaatgttcgattagtaccgtct
ggttttaagtttgtttacatatgactcgattttgctagtCTCCATCTGtc
catttccaacaaaaagcagttatgaaaacaaaagtaaacgAGTCATAGTG
TGCCTACTAAttgcgagggtgtcaaataccacgtgtttcTGCGTGTTTAA
TAGTAAAATTAACgttagaaatttttgtttatttactttttttaactttt
ctgctgattcagcattctgCTGATTCAGTTGATAAAGTATAGATAAACGA
ATAAATAAAATAGCaaagtagcgagttgataaagcaacagataaacaaat
gaagaaaGTAGCAAAGAAGCGAGTAGAAAAAGCAATAGAttaacgaatga
agaaagtcaGGAGGTATTTTTTAACTTCGCATTTTTGagttagaaaatct
tttttggtcgctaaatctaaaattcacttcGCAACTaaagcacttaagct
aaagtcccgcaaaagtgggacaaaaatcagtttcttgaagtttgcaaaaa
aacgccacatagaagacacaacttttgttgacgtcaaaccaaaggtttta
tttttccgtgaactttgaacccttctaacattttttctatgtatgctaaa
gcatTCCGGattttactaaaagaaagcctgtgatcttagctttcaagcgg
tatataacactgtggacacgggctagacggcaaatttgTCTGCTACGGGA
ATGAAAAAAGTTGCAACTATTGatgaacaaatgtttctggaaatggagga
actcatagttgaaggctgaaactctgtatgtttatcagaaaaaggttgag
gaattcaaaaatcgctagttctagttctttcatcttcatgtagttttttt
tagcatgggaatgtcccaaaaatcagggttttctcctttttctttactta
taactttttgttcctccatttccagaggcctaccaccttttttggctcat
ttcaaccttttccaagctattttcttcaaaaacaaaaataaaacaatgca
atgtcttcttttctcaaaaaaaggatatatcttttgttatcttgataaat
atactaaatattttacaaatatttttatataataatattctaacaccatc
aaagaattccaTAGCGCCAGCCTGGATTTAGGTCCCatgcaaaaattagg
tcccccctgagttttaagtccccccaaagaaTTATGAATCTTTTGTTAGC
CCCAAGgacttttgactttttagacactttcaaaaaattgatccagtaaa
aaagggttttccaatTTAAATTGTGTTCAGTTCTAAGTTTTTAAGATCAA
ATATTTTGCACACTATTTATAAATATATTGCGCCGCAgactaaaaatttt
cagattcatgagcttcaatttgagtaattgaaccaactattaagctgaat
tattttagcccccacgtaagtgatgagattttagttCCCCCCAAGTAAAT
AGATCCCCCTAAAAAAGTGGCGTAGTTCCAGGCAtctccttttttgggaa
agaTTTGGGGTGTAACCCCTCCCCCAACCAGCagggggggctgacgctat
gaattctccctccaaatttcaggtctctagctacactagaaaaagagata
tgcaaaattaaagaagTATGACTGGAAAAAAGTGACTATCTATCTCAGGT
AGGTCTTGGGATCCCATAGGGTTCCCTTTAGGGCAGACCTGCCAATTTGA
GATGTTCATTTTGtgtgagataaaaatttcgcAGCGAAATCTGAAATTTT
AGCCTGGTTTATTTGATTGTAGGGAATCGAAAGTCAGgaaattttttccc
aaaatgggtatattcaaaaatttagaatattggggaaacttttttccaaa
aatgagaaaattggGAGAACATTTTTTCcctaaaattagaaaattctttt
aattctgaaaatcagaaaatcggggtaactttttcaaaagttggaaaaat
caaggaaaatttttctcaaaaatgcttgAGAAatccaacttttcaaaaat
tgcacAAGGCAATGTGGAAATGTGTGAGTCTCAAAACCAATGCATGAGAG
TTGCTGGCACCTCTGTTAGGGGCACTTGTAGAGCTGGGAGCTATTTTAAT
TAAGGTCTATAAATTCCATGCTATCAGTTTATATTTGTGAATGACCAAAA
TCTATCCTGTCTCAGTGGCGCAAGCAGTTGGGCGCTGGGTTTAGGTAGGA
GACCTATTTCACTGATACaggaaaatctcaaaaaaatacATAGAGGACAg
ttaaaaacaaagttttcacGAAAATTCTTTACAAAAGTCctcattttctt
ctttgtcaaattttttcattgcaatttttaaattttcatattcaagGATA
GTTGCTCTACCAGAAAATGTATATCATACCAaagttttgtgggctacatc
aggcagaaatttGTATTGCGTATGtgtcaaatatgaaaaattggtcagag
ccctttaaaagaaccatttgaTAATCAATCGATTCAATCTATAGATAATC
AAGCCTTCCTTTAAAATCCTGATAATAGATTACCAATTCTTATTGattat
tggaattttttattgatCTATTGGTcatcaattgaaaaaaaattgttgat
ttgtCAAGTAATAGGGTCTGCTAAAATGTGACCGCTGTGATATCTCTTAA
AGAaacattgaaaagctttttctaGAGGGTGCTAGCAATATGCAGAATTA
AGTGTTTTCATTTCAAGAAATGACTCGCAAGTCAGAAGCTTGTATCTCAG
GAAAGATTAAACATTGTTAAAACAGGctaaaaaattaaagatttttgaaa
tgtttcctCTTGGTTCGGTTCAAGTTGATAATTTgttataattttatttc
ttacaAAGTGTTTAGTAAAGAGATTGGGAAAAAATGGAGATTGATGAGAT
aaagattgagtttaatgatgTACATGAATCGCCCATGGAACATGAAGTTC
CTGCTCAAGCCCTCATGACATTGCACGATTCTGTACAAAACATGCCAAGT
AAACAAAAGTCAGCTCTACAGGTAAGATCTTCCCTGCTTTTACAATTGTC
TTGAATTATCTTGTTTACACAAACAAAAGTAAAGGATAAGTCCTTTTAAT
TTATATTTCTCAATTTTATATTGTTTGCCAATAATGAAAAATACTATTGT
CGTTTCAGAGGATTTTAAGCTAGGCTTGGTGTTAAAATCTCAGACAGTAC
TAAAAgggttttcaagtttttttttgcatgataCCCCAATAGCACCACCC
CATCATTTTAGAGAAGTAGTTTTAGTATGTTGTGTATTTTTGAACTTACA
AAATGGTCCTATTAATTAAACAGTGTTTGTTTGTTCGTTCATTCGTTAAT
TACCAGCACTTCTCGGGACTGACTGataaattttttatgatttcttGAGG
TTTTCTTATTAGTTTTTCCTGACTTTCTGTTTATTTAATATAATGTTTCT
GTTGATCAGCCAGGTGGGTCTATAAAATTAAAGTATCacttattttttat
taatttagcAAACATTATAGGCATAtgattaaaatgtaaaaataactttt
tttaaaggagaaaattattttcgaaaaatttagggaaaattctaaaaaag
atttaaagaagATAAAGTCACCTTTACTTTATTTAGTCCTCCATGTTTAT
AAaaggattttaatttttttggtatacCATAACAATTTCACTTTAACGTC
acgatgtctgagattttaatatgctaaaatttccagggttaAAAGATTGA
TTGACCATGTCTGGCATTTCCAAGTTCTGAAGGCTGGATTTGTATTGCAA
CATAAGTCAGGTTTTGGTAACTTATTTATTGTAACTGTCTTATCCAAGTC
CACTGTTTTATAATTACTTGAATTTCTTAGGAAGCAGTAGCTGATGCATC
ACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGACAATCAGCCATGGA
ACCAATATTCGCCCTTGAAACGCTACGAACCTAGATCTCTTTCCAAAGAT
TTCTCACAAGAACAATTGGAGAGCATGAATAAAAACTACACCTCAATTAA
AAACACTTTGAAGCAATCATCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046349-exon-scaffold_109-1491911889:70689..70824 | TCONS_00046349-exon-scaffold_109-1491911889:70689..70824 | Clytia hemisphaerica | exon |
| TCONS_00046349-exon-scaffold_109-1510915933:70689..70824 | TCONS_00046349-exon-scaffold_109-1510915933:70689..70824 | Clytia hemisphaerica | exon |
| TCONS_00046349-exon-scaffold_109-1575043694:70689..70824 | TCONS_00046349-exon-scaffold_109-1575043694:70689..70824 | Clytia hemisphaerica | exon |
| TCONS_00046349-exon-scaffold_109-1491911889:75804..75959 | TCONS_00046349-exon-scaffold_109-1491911889:75804..75959 | Clytia hemisphaerica | exon |
| TCONS_00046349-exon-scaffold_109-1510915933:75804..75959 | TCONS_00046349-exon-scaffold_109-1510915933:75804..75959 | Clytia hemisphaerica | exon |
| TCONS_00046349-exon-scaffold_109-1575043694:75804..75959 | TCONS_00046349-exon-scaffold_109-1575043694:75804..75959 | Clytia hemisphaerica | exon |
| TCONS_00046349-exon-scaffold_109-1491911889:76819..77012 | TCONS_00046349-exon-scaffold_109-1491911889:76819..77012 | Clytia hemisphaerica | exon |
| TCONS_00046349-exon-scaffold_109-1510915933:76819..77012 | TCONS_00046349-exon-scaffold_109-1510915933:76819..77012 | Clytia hemisphaerica | exon |
| TCONS_00046349-exon-scaffold_109-1575043694:76819..77012 | TCONS_00046349-exon-scaffold_109-1575043694:76819..77012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:70689..77012 + |
Blast
The following BLAST results are available for this feature:
|
