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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046317 ID=TCONS_00046317|Name=TCONS_00046317|organism=Clytia hemisphaerica|type=transcript|length=1204bp
gaatgattgattttctattggccgaattgatcgaacgccaatcgaatttc
acatCTTTTTTTGATTAGATTCGATTATCGTTCGCTTGGTGTTCGATTGA
CgttcgattagtttcgattagCTTCGATTGCATATActtttcgattgatt
cgattagtTCGCAtacagtggcggcctggcagggggtgcagggtgtgcag
tgcaccacccagaaagatctgagaggggcgccaaaaaccttttcaagggg
gcgccaaaattttgttgatgtttaattgggcaatTTGGCGCCATTTAGCA
CGTTTATAGCGCCGTACAATGTTATCTTTTACGCCTGCGGCGCTTTATTT
TACCCTCTTGCatcctttctcttgaattttttcaaaacttttatcaatat
tgaatcagaagtaagagaagtgttgtgtatccaacAGGGGTTAAGGTGAC
CGATGGCTAAATCTTCATGATGCACCGGCCTTGCAAGTACACACGCGCGG
GCACGCGCGGGCAAAATATTGTGCGCGTAAGCGCACAGGCGAGCGCAGCG
TTTTGTTAGGGATCATCCCTAACATGCACCCAGACGGCTGTGCACCCTCC
CGGTGGTGCACCCGTGTGTGTGGTCTTCCTGGAGGAATGGCgatcataac
agttagcctaactcgtgaGGTCTGTTCACCCGTATATACTATATATGTCA
CTCTATAAATAAccttgaatttcgaaaaatcagCAGTCGTCGTGGCCCAG
TGGTATAGACTACGTGTTTCGTAATCGGAAACATGTAGGTTCGAACCGGG
GTAAAGTAttggaaagtttcaaaaaattttctaagtctCCGTGCTTGTCG
GTGCATCATGAAGATTTAGCCATAGGTTTAAGGTGAATGTGTCGCCCTTA
TGAATTTTGGCATATGAGAGTGCTCTTCCGCGGCCCGCTAGAAATGTTTG
TTTGACAGATATGAAAGTCAGTTTTGATGGAAATCCAAGATGGTGGCTGT
TGTTTCATTCGACATCtaagtttttgttgaaagaaGAGAGATTCAACATT
ATTTAGCAAACTCGATTCGACTCAACTTTATTTCTCACTTTCCCCTAGTT
ACAAAaatgctcacccccaaaatgagagattgccaaaataatcaaaactt
gttgattctcgctttggtttttgtggtcttatactgactaactttctccg
tttt Run BLAST on NCBI transcript from alignment at scaffold_108:609579..610847- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046317 ID=TCONS_00046317|Name=TCONS_00046317|organism=Clytia hemisphaerica|type=transcript|length=1269bp|location=Sequence derived from alignment at scaffold_108:609579..610847- (Clytia hemisphaerica)
GAATGATTGATTTTCTATTGGCCGAATTGATCGAACGCCAATCGAATTTC
ACATCTTTTTTTGATTAGATTCGATTATCGTTCGCTTGGTGTTCGATTGA
CGTTCGATTAGTTTCGATTAGCTTCGATTGCATATACTTTTCGATTGATT
CGATTAGTTCGCATACAGTGGCGGCCTGGCAGGGGGTGCAGGGTGTGCAG
TGCACCACCCAGAAAGATCTGAGAGGGGCGCCAAAAACCTTTTCAAGGGG
GCGCCAAAATTTTGTTGATGTTTAATTGGGCAATTTGGCGCCATTTAGCA
CGTTTATAGCGCCGTACAATGTTATCTTTTACGCCTGCGGCGCTTTATTT
TACCCTCTTGCATCCTTTCTCTTGAATTTTTTCAAAACTTTTATCAATAT
TGAATCAGAAGTAAGAGAAGTGTTGTGTATCCAACAGGGGTTAAGGTGAC
CGATGGCTAAATCTTCATGATGCACCGGCCTTGCAAGTACACACGCGCGG
GCACGCGCGGGCAAAATATTGTGCGCGTAAGCGCACAGGCGAGCGCAGCG
TTTTGTTAGGGATCATCCCTAACATGCACCCAGACGGCTGTGCACCCTCC
CGGTGGTGCACCCGTGTGTGTGGTCTTCCTGGAGGAATGGCGATCATAAC
AGTTAGCCTAACTCGTGAGGTCTGTTCACCCGTATATACTATATATGTCA
CTCTATAAATAACCTTGAATTTCGAAAAATCAGCAGTCGTCGTGGCCCAG
TGGTATAGACTACGTGTTTCGTAATCGGAAACATGTAGGTTCGAACCGGG
GTAAAGTATTGGAAAGTTTCAAAAAATTTTCTAAGTCTCCGTGCTTGTCG
GTGCATCATGAAGATTTAGCCATAGGTTTAAGGTGAATGTGTCGCCCTTA
TGAATTTTGGCATATGAGAGTGCTCTTCCGCGGCCCGCTAGAAATGTTTG
TTTGACAGATATGAAAGTCAGTTTTGATGGAAATCCAAGATGGTGGCTGT
TGTTTCATTCGACATCTAAGTTTTTGTTGAAAGAAGAGAGATTCAACANT
CCAAGATGGCGGCTGTTGTTTCATTCGACATCTAAGTTTTGTTGCAAGAA
GAGAAATTTAACATTATTTAGCAAACTCGATTCGACTCAACTTTATTTCT
CACTTTCCCCTAGTTACAAAAATGCTCACCCCCAAAATGAGAGATTGCCA
AAATAATCAAAACTTGTTGATTCTCGCTTTGGTTTTTGTGGTCTTATACT
GACTAACTTTCTCCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046317-exon-scaffold_108-1575043694:609801..610847 | TCONS_00046317-exon-scaffold_108-1575043694:609801..610847 | Clytia hemisphaerica | exon |
| TCONS_00046317-exon-scaffold_108-1575043694:609579..609735 | TCONS_00046317-exon-scaffold_108-1575043694:609579..609735 | Clytia hemisphaerica | exon |
| TCONS_00046317-exon-scaffold_108-1510915933:609801..610847 | TCONS_00046317-exon-scaffold_108-1510915933:609801..610847 | Clytia hemisphaerica | exon |
| TCONS_00046317-exon-scaffold_108-1510915933:609579..609735 | TCONS_00046317-exon-scaffold_108-1510915933:609579..609735 | Clytia hemisphaerica | exon |
| TCONS_00046317-exon-scaffold_108-1491911889:609801..610847 | TCONS_00046317-exon-scaffold_108-1491911889:609801..610847 | Clytia hemisphaerica | exon |
| TCONS_00046317-exon-scaffold_108-1491911889:609579..609735 | TCONS_00046317-exon-scaffold_108-1491911889:609579..609735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:609579..610847 - |
Blast
The following BLAST results are available for this feature:
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