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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046248 ID=TCONS_00046248|Name=TCONS_00046248|organism=Clytia hemisphaerica|type=transcript|length=856bp
AAAATCTGttgcaaaaatttctttcttttcatataaaaattctgtacaga
aataaaaataaaaacttgcattgacaaattcaaaatataaattATACACC
ATAGAATAGAATTACGGAATAACAATTAGAAAATCCTTGAAAGCAAGTAC
AAGAAAGAACAATTTCTCGAGGAATATCAACCCAAGTCGCTTTGTGTTTA
TGAAAATCCAACGACACACAGTCGATTATAATTTTTCTCGAATGGTAGGG
TCCCCAGCAAGCTTTATGTGAAAATAGTTTCCATTTTTGTTCGATTCCCA
TACAACCCTATTGTGCAATATTGCATTTACAATGGAGCCTCCATAACTTG
AAATCTTACGGGGAACAGAAATTTGTTCGCATTTAAGAAACTTTGAGATA
TGGGGTAATGCATTTTTAACTGAAGAAAAGTAGAGAACacattcgagtta
aggaaacattcgagttatggagactccaatGTATTTGTATAAATTGGTCC
CGTACGTCAATTCTTCACGAGGACTAGTGGTAAAGCTTTAATTGACAAAC
ATCGAGTGTATTGAAAGCATTTATAACACTTTAAGGTGTGTATCAATTCT
TCGCGACAATTATGTGGTAGAAAGCCTATTATTGATCAAAACCCAGGATT
TTAAGAGCAGTCATTGCAGCCTGAGCTTTGGCGTGTTTTTTGTTTGGAGA
TGCGACTGAAGGTTGATAGTCTACATTTTGTATGGTGCATTTGATGAGGA
AAGTCTTATTGTGTGATGAACCACCTTCGAACACACATTCGTATTCTGGC
ATCCCCATCTTTCTTTTAGAACAATTCTCTGCTAATACCGATACCGGGTG
TTtgcc Run BLAST on NCBI transcript from alignment at scaffold_108:272757..275594+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046248 ID=TCONS_00046248|Name=TCONS_00046248|organism=Clytia hemisphaerica|type=transcript|length=2838bp|location=Sequence derived from alignment at scaffold_108:272757..275594+ (Clytia hemisphaerica)
AAAATCTGttgcaaaaatttctttcttttcatataaaaattctgtacaga
aataaaaataaaaacttgcattgacaaattcaaaatataaattATACACC
ATAGAATAGAATTACGGAATAACAATTAGAAAATCCTTGAAAGCAAGTAC
AAGAAAGAACAATTTCTCGAGGAATATCAACCCAAGTCGCTTTGTGTTTA
TGAAAATCCAACGACACACAGTCGATTATAATTTTTCTCGAATGGTAGGG
TCCCCAGCAAGCTTTATGTGAAAATAGTTTCCATTTTTGTTCGATTCCCA
TACAACCCTATTGTGCAATATTGCATTTACAATGGAGCCTCCATAACTTG
AAATCTTACGGGGAACAGAAATTTGTTCGCATTTAAGAAACTTTGAGATA
TGGGGTAATGCATTTTTAACTGAAGAAAAGTAGAGAACacattcgagtta
aggaaacattcgagttatggagactccaatGTATTTGTATAAATTGGTCC
CGTACGTCAATTCTTCACGAGGACTAGTGGTAAAGCTTTAATTGACAAAC
ATCGAGTGTATTGAAAGCATTTATAACAGTTTAAGCTTTAAGGTGTGTAT
CAATTCTTCGCGACAATTATGTGGTAGAAAGCCTATCATTGATCAAAACC
CAGGATTTTAAGAGCAGTCATTGCAGCCTGAGCTTTGGCGTGTTTTTTGT
TTGGAGATGCAACTGAAGGTTGATAGTCTACATTCTGTATGGTGCATTTG
ATGAGGAAAGTCTTATTGTGTGATGAACCACCTTCGAACACACATTCGTA
TTCTGGCATCCCCATCTTTCTTTTAGAACAATTCTCTGCTAATACCGATA
CCGGGTGTTtgcctaaaaaaataaaaaaaaaataaaataaatttcaaaac
caTCCTGCCTGGATTGtttaaccttgaaacaataacaataaaatttatat
ccccattgagatttcaataggaatttttatccccattgagaaaaaaagtt
atcgGAATTATCTGTTTTGGGTACACGATGTGCTAGGTTCTGTTTCTGCA
TTCTAGCTATCGCATTTTCATATAACTGATAATGGAATTAAATAACATTT
CATAAATTATTACCTCCTATATTATTGACAGGTGCAAGTTTTTTCTTCGG
TAAATTGCTTCGTTGGAAGGAGTTATTTCCATACAAGCCACGCCCTCTTT
GAGGTTGTTCCTCTTGAGAAGCTAATCCACTGCGACCAACTTTGACGTCA
AAAGTAACCGGTGCCACATATCCTGAAGAATGTGTAAAGGAGTAGAGCAG
TTTAAAAAATGATCAAACCAACTGATGAGGTACACTAAATTCTTTCTAAC
AGGAACCTCTATTATTCCAATCtcttttttattctaaaatatTGGTTCCC
TCAGCTGGAAAGCCGTTAAAACTACTCGCTGTAATTAGAATCTTTCCCTA
ATTCGAATAATATTTTTGGTCTTTTGAACATCGAATTAAAAAGAGTCAAC
TGAAAAGCCAAGGAGTATACAAAGTGAATCTCCTATGTAGGATTCAAAGC
CACTAATTTCCTACATAGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNACCTAagagtaaaaagaaaatatgtaacaaaaagtaaaatggt
atcaGGATTGAAGAGGTATGGGTAGTTTTTATCTGAATATTAGGGGGCGT
GAATATAGGATTCCCGAAACATCGACTTTTCATATTCCGTTGAAGTTTTT
CTTAGTTCTATAAATGCAATCAGTTTCTTTAAAGATGAAATTGAACAAGA
ACAGCACAtcataatttaatttttcaattattatCACATAATCTTTTGCA
TCGAGTAATTTTTACTCATGAGCATTTTCAACTCATCAGTAAAAATCTGt
tgcaaaaatttctttcttttcatataaaaattctgtacagaaataaaaat
aaaaacttgcattgacaaattcaaaatataaattATACACCATAGAATAG
AATTACGGAATAACAATTAGAAAATCCTTGAAGTACAAGAAAGAACAATT
TCTCGAGGAATATCAACCAAAGTCGCTTTGTGTTTATGAAAATCCAACGA
CACACAGTCGATTATAATTTTTCTTGAATGGTAGGGTTCCCAGCAAGCTT
AATGTGAAAATAGTTTCCATTTTAGTTCGATTCCCATACAACACTATTGT
GCAATATTGCATTGACAATGAGGCCTTCATAACTTGAAATCTTACGGGGA
TCAGATTTTTGTTCGCGTTTAAGAAACTTTGAGATATGGGGTAAGGCGTT
GTTAACTGAAGAAAAGTAGAGAACacattcgagttaaggaaacattcgag
ttataaacattcgagttataaacattcgagttatagaggttcgaattata
gagactccactgtatctGTATTTTGGAATGTGTTTCTTCTCTAGTGTGGG
CTACATAAGCCTTTAATTGACAAACATCGAGTGTATTGAAAGCATTTATA
ACAGTTTAAGCTTTAAGGTGTGTATCAATTCTTCGCGACAATTATGTGGT
AGAAAGCCTATTATTGATCAAAACCCAGGATTTTAAGAGCAGTCATTGCA
GCCTGAGCTTTGGCGTGTTTTTTGTTTGGAGATGCGACTGAAGGTTGATA
GTCTACATTTTGTATGGTGCATTTGATGAGGAAAGTCTTATTGTGTGATG
AACCACCTTCGAACACACATTCGTATTCTGGCATCCCCATCTTTCTTTTA
GAACAATTCTCTGCTAATACCGATACCGGGTGTTtgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046248-exon-scaffold_108-1491911889:272757..273334 | TCONS_00046248-exon-scaffold_108-1491911889:272757..273334 | Clytia hemisphaerica | exon |
| TCONS_00046248-exon-scaffold_108-1510915933:272757..273334 | TCONS_00046248-exon-scaffold_108-1510915933:272757..273334 | Clytia hemisphaerica | exon |
| TCONS_00046248-exon-scaffold_108-1575043694:272757..273334 | TCONS_00046248-exon-scaffold_108-1575043694:272757..273334 | Clytia hemisphaerica | exon |
| TCONS_00046248-exon-scaffold_108-1491911889:275317..275594 | TCONS_00046248-exon-scaffold_108-1491911889:275317..275594 | Clytia hemisphaerica | exon |
| TCONS_00046248-exon-scaffold_108-1510915933:275317..275594 | TCONS_00046248-exon-scaffold_108-1510915933:275317..275594 | Clytia hemisphaerica | exon |
| TCONS_00046248-exon-scaffold_108-1575043694:275317..275594 | TCONS_00046248-exon-scaffold_108-1575043694:275317..275594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:272757..275594 + |
Blast
The following BLAST results are available for this feature:
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