TCONS_00046229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046229
Unique NameTCONS_00046229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length889

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046229 ID=TCONS_00046229|Name=TCONS_00046229|organism=Clytia hemisphaerica|type=transcript|length=889bp
TTAGTAGACCTGTTTTGAATTCTTCTTTCATAGTTGGAAAAACGACAGAG
GTTATGTCTTTTACGGCGCACACTTGCCGGCTGTTTTTCATGTTGCCATC
GAGAACCAACACTTTTCCACATCCTGGTTTGCTGCAACGATGACCTAATA
AACAATTAATAACCTTATTGCCGGgggggattgatggtgttataatgtta
ttggaaaaGTACAGCtgctgtctaaatttgataaagactggatgaaatcg
tgcttttttggactttgatGTTTTTGGCTTCAAACAACATAACACATAAC
AATGACAATCACATCTCCTATTTATcggtcttgcaaaattatgacaatgg
tctttggaatttgatcaattatattaaaatacagtttttattggaatttt
atgaagacaaaattatttttcacgcagttccggaccgcagattgtgtttt
tctgatCTTGGCGCACGTTTTTGGCTTTGACTAAATGGTTGATATGGTAT
GAATGGCGACAACAGTTTTTACATATCTCTTATCGGACCTGCAGAAAGAG
GACTGCAGACGGGTCAACCCATGTGAGGGTAATTAGGCAGTCAATATAAG
ATACTTGACGAAAACGTAACATTGAGCTATAGTCAACAATAATAGCAGCG
AGCTAACGGTTGACTGCTTCTTCGATAAGTACCTACCTACTACCTCTCTA
CCTACCTtcctacctacctacctacctagCTAAACTATATTGGCTGACCT
GATTTATAAAAATTGGGGATGTTGGCAATAATTTACTTAAGTCACGTTAC
TTAATTACAAACAAGAATGATCTTAAAAAGAAATTATGGGGAAAATCCTA
ATACTTTTAGACTGttaattgaattttttatttacaaag
Run BLAST on NCBI

transcript from alignment at scaffold_107:35060..37046-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046229 ID=TCONS_00046229|Name=TCONS_00046229|organism=Clytia hemisphaerica|type=transcript|length=1987bp|location=Sequence derived from alignment at scaffold_107:35060..37046- (Clytia hemisphaerica)
TTAGTAGACCTGTTTTGAATTCTTCTTTCATAGTTGGAAAAACGACAGAG
GTTATGTCTTTTACGGCGCACACTTGCCGGCTGTTTTTCATGTTGCCATC
GAGAACCAACACTTTTCCACATCCTGGTTTGCTGCAACGATGACCTAATA
AACAATTAATAACCTTATTGCCGGGTAAGTACTTTTATTTATATATTGCT
TAAAATTTGCAAAAGTGATCTTAGATGGATGGGTACTTCATGTACTGTAT
TTCTGTCAGTAATAAAGTTTTTAGACCTTTCAGTAATTATTCATGAACCT
GAATTCAAAACTGTTTCATCCACCACACACTCACTTGAATTACCTTAAGG
GAGCTAATTTTGACGGGAACTTAATTTGGCGGATTTGCTCAAATCCGCCA
AATTAAGTTCCCGCCAAAACTATTTTTTTCCGCCATCCGCCAAATTAAAT
TCCCGCCAAATTTAGTTTTTTCGTCCATCCGCCAAATTAAATTCCCTCTG
AAAAATTTTTTTCAGCCATCCGCCAAATTAAATTCCCGCCAAAATTAGTT
CCCTTAAGGTACTTAAAAAAGGGCCTCAAAGTGCGTCTAAGACTATAAAT
TTTAGACGCTTTCAAAATCTACTACCACCCATGAATGACTTTTAAAACAA
CTTTTCATAACTCAAAACTACTACCACGCATAGTTTAAGGCCGTGAAATT
CAAATAGACTTTATTACATTTGTAAACAAAGGGGAAAAACTGTGACGGTT
GGTAACTTCCATTTTCAGCACCTTCAATATCTATAGAACGAATTTATAAG
TTTTTGGTTGTTTTAATTGAAAACTGAATAAGACGGGCCTTAATTCCCTG
GAACCACCTCAAGAACACCTAACGCACTTTGTATTGTAATTGGTGAGCCA
AAGCTGAGCATTCCAATAAAACTTTCTTCTTCCATAAGACGGCAAATAAT
CTGATATCCTGATATCACTTTGATTTCTAAACTTTCTTCCGATCGGGTCA
ACTTTTTTGGGTACTTTTACTAGCGTGTGTTGTTTTTACAGAGTATTTCC
AATATAATCTGTTGATCTGTTGCAAGCTTCAATTTTTGTCATTAATTTTT
TTAACTCGGCAAGTCAAACACATGATTTTCATCAAGGCAAGGGGATTCTC
TTTCTACATCTTTTGAAGGTTATAAAAGTCATTTGCTCAAGTTTTTGCTG
AACTTTCTCATACTTTTTGCAGTATTTTATTAGTTGTTGCAATAAAAACA
TATTTCTCTTGTTTGCCTCTAGGGGGGATTGATGGTGTTATAATGTTATT
GGAAAAGTACAGCTGCTGTCTAAATTTGATAAAGACTGGATGAAATCGTG
CTTTTTTGGACTTTGATGTTTTTGGCTTCAAACAACATAACACATAACAA
TGACAATCACATCTCCTATTTATCGGTCTTGCAAAATTATGACAATGGTC
TTTGGAATTTGATCAATTATATTAAAATACAGTTTTTATTGGAATTTTAT
GAAGACAAAATTATTTTTCACGCAGTTCCGGACCGCAGATTGTGTTTTTC
TGATCTTGGCGCACGTTTTTGGCTTTGACTAAATGGTTGATATGGTATGA
ATGGCGACAACAGTTTTTACATATCTCTTATCGGACCTGCAGAAAGAGGA
CTGCAGACGGGTCAACCCATGTGAGGGTAATTAGGCAGTCAATATAAGAT
ACTTGACGAAAACGTAACATTGAGCTATAGTCAACAATAATAGCAGCGAG
CTAACGGTTGACTGCTTCTTCGATAAGTACCTACCTACTACCTCTCTACC
TACCTTCCTACCTACCTACCTACCTAGCTAAACTATATTGGCTGACCTGA
TTTATAAAAATTGGGGATGTTGGCAATAATTTACTTAAGTCACGTTACTT
AATTACAAACAAGAATGATCTTAAAAAGAAATTATGGGGAAAATCCTAAT
ACTTTTAGACTGTTAATTGAATTTTTTATTTACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029526XLOC_029526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046229-exon-scaffold_107-1575043694:36873..37046TCONS_00046229-exon-scaffold_107-1575043694:36873..37046Clytia hemisphaericaexon
TCONS_00046229-exon-scaffold_107-1575043694:35060..35774TCONS_00046229-exon-scaffold_107-1575043694:35060..35774Clytia hemisphaericaexon
TCONS_00046229-exon-scaffold_107-1510915933:36873..37046TCONS_00046229-exon-scaffold_107-1510915933:36873..37046Clytia hemisphaericaexon
TCONS_00046229-exon-scaffold_107-1510915933:35060..35774TCONS_00046229-exon-scaffold_107-1510915933:35060..35774Clytia hemisphaericaexon
TCONS_00046229-exon-scaffold_107-1491911889:36873..37046TCONS_00046229-exon-scaffold_107-1491911889:36873..37046Clytia hemisphaericaexon
TCONS_00046229-exon-scaffold_107-1491911889:35060..35774TCONS_00046229-exon-scaffold_107-1491911889:35060..35774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_107supercontigscaffold_107:35060..37046 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2298	1.1782	0.600592	1.27871	4.71646	2.35865	3.03237	2.143	1.68754	2.81165	2.32587	1.31833	1.22558	0.970101	0.822175	2.15127	1.76048	2.74533	1.06072	2.0349	4.86515	4.29858	1.55431	2.65597	3.1888	4.65103	0.940397	0.400887	0.311318	0.247091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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