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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046225 ID=TCONS_00046225|Name=TCONS_00046225|organism=Clytia hemisphaerica|type=transcript|length=2331bp
gtcattttgaatgaaaacgaaaaagtttaaaagggcgcgctatcatatca
gtgaaagttattgtgacatgttatgacagaaagtatgattgataaacttg
gtggagatAACAATCAAAGGAGCAGTTATCGAGTCTtcgaagggttgtta
agaaagtgatcgaatactcacaatttttttgaaattttagtactcgacat
ttgacattttaatcgaTCTGCTATCAGGTTATTCTGTTGTTATTGAAATT
ACATTATGTTTTCTCTTCTAATTTATTATAGAGTCAAAATGATCTTGCGT
CtagaaaaaggtctatttgatcTCTCATCATAGGGTCAACCCCCCCTGAC
TTTTGGTGGGTTACacccaaaaaaattgaaatgaaaaccgGGATCTAAAA
TACAgccaaatatttggggggacctgatatgtttggggggCGGAATTTTA
ATGGCAAAGCTGGGGGCTGACTATTTCTTTTATTGTGTTTTTCTTTATAT
CACCACGTTTTTAtccaaaaaccttttttacagTCTATTGATTCTGTTTG
TTTTCACTTGTAGCTACCATCTTGAATTAACCATTatacagtagcgtggt
ggcagctCGAGGCGCCGAAAAACAAAGGGCGCAAAAAGATGCTACTGATT
ACTAGATAATATGGcagtttttggccaaaaaagagAGGAAAAACCCCAAA
ATATTTGTGCTTGCTTTGAGTGCGTTTTTTAAAAGACATTTTGACTTATC
ATAGCTAGTGGGTGTCATAATCAAAATCTTGACCGAACTTTAGTCGAACC
ACCACGCTACTGCAGATTATAGTCATTTTCAGCCACAAAATAAAGGCCTT
TTTTACATCTTAAAAACCGTAAAGATTTCGAGAATGACAAAAGAATAGAG
TGTGATTTTCCTAAAAACGATATTAAattaacaaatattttatactAGGT
ATAGGACTGGGGGCTGCTTAAAAAAACTTCTAATATTTGGGCGGACTATT
TTTTTGCCTAGGACCTAGACCTGGGCTGACCCTATGACCATACAGTgatc
aaagttcttccgtctcaaaCGGATTTCTGTCCCacagaaatttttgtcaa
agttttcctTCTCAGTTAGAAATGGTTATCAAGCAAGAAATAGGGATTTT
ATTCTCTAGAAAAATTCCATCAGAAAGAAATCTCGTATTAAAACTGTATG
ATAGGCATTTTAAAGACATTCTGAGTTGTTTTGATTAACATTAACAAATT
TTAGTACCTTTCTAGCCAATCTAGGgggtaaaaaatctgaaaattttctg
aCTCTCGGCCCCCAACCATAGTTGGGCCTGCGGGTGGCACTGTATACCAA
AATATCTCTACCAAGAAtttttccgtctcacagaaaaaaactgctttgac
cAATGACCatagtaaaaattcaaaaggaCTTGGGTGTTTaaaacaggggg
ggggtcggtactaaaattcAAGACACATATAAAtactaaaaggttttttg
acgatttttgacatacccccacctgatttttgaaaaaggaaatttagtac
acatgtactaaaattattttttgacattttagcataGTGACCACCTAAAT
TAGGCTTATTTTGGAATTCGTTTCAGAGAGTGGGTCTTCTAACAAAATGC
CAACTCTGGTTATTTAAGCTGTCAATGAACCTGGTCTATGTCTCTCTATT
CTAGATAAAGACTCAGAAACAGTCAAGACACTTTTTCTCTGCTCTACTTT
AGTTATTGCAaagattgattggttatttttcaccTCTAATTTACGGCttg
ttatttcttttctatccagttatccatggttctttacaaaaataaaacat
tcaactttgaaaacattttttttgcctaagactgtcatatttgtccgaaa
aacacaccaaagtgtccgaaaaaaattggcacccatgttattttgattcc
cctaccccttagctttccaaaagtGTATAagaagtgctttgactaaaaaa
gtcgagcaacctaaaaaatcaaacaaatttccccctactatttccaaatt
ttctgaaagaaaGGCCACTGATGTATTTAATCCTTGATTGTTCTATTTAG
GGTAATACAGGTAAACTCGGTTGAGAAATTGTTGAATGCAAAAACTTCAC
AATGTTTCATCATCAATTTAGGCAAGACTCAACATTTTAGTGAATAATAA
GTATTCCTATCTGAAGAGTGCCAAACTTAAAAtcatggaaattttaaaat
gttcaaTTTATATTATGGATAgttcttattattttgatttgaaattttcc
tcCTTTGGTCAGTTAACTGCTTGTTTTAAAC Run BLAST on NCBI transcript from alignment at scaffold_106:478423..480753 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046225 ID=TCONS_00046225|Name=TCONS_00046225|organism=Clytia hemisphaerica|type=transcript|length=2331bp|location=Sequence derived from alignment at scaffold_106:478423..480753 (Clytia hemisphaerica)
GTTTAAAACAAGCAGTTAACTGACCAAAGgaggaaaatttcaaatcaaaa
taataagaacTATCCATAATATAAAttgaacattttaaaatttccatgaT
TTTAAGTTTGGCACTCTTCAGATAGGAATACTTATTATTCACTAAAATGT
TGAGTCTTGCCTAAATTGATGATGAAACATTGTGAAGTTTTTGCATTCAA
CAATTTCTCAACCGAGTTTACCTGTATTACCCTAAATAGAACAATCAAGG
ATTAAATACATCAGTGGCCtttctttcagaaaatttggaaatagtagggg
gaaatttgtttgattttttaggttgctcgacttttttagtcaaagcactt
ctTATACacttttggaaagctaaggggtaggggaatcaaaataacatggg
tgccaatttttttcggacactttggtgtgtttttcggacaaatatgacag
tcttaggcaaaaaaaatgttttcaaagttgaatgttttatttttgtaaag
aaccatggataactggatagaaaagaaataacaaGCCGTAAATTAGAggt
gaaaaataaccaatcaatcttTGCAATAACTAAAGTAGAGCAGAGAAAAA
GTGTCTTGACTGTTTCTGAGTCTTTATCTAGAATAGAGAGACATAGACCA
GGTTCATTGACAGCTTAAATAACCAGAGTTGGCATTTTGTTAGAAGACCC
ACTCTCTGAAACGAATTCCAAAATAAGCCTAATTTAGGTGGTCACtatgc
taaaatgtcaaaaaataattttagtacatgtgtactaaatttcctttttc
aaaaatcaggtgggggtatgtcaaaaatcgtcaaaaaaccttttagtaTT
TATATGTGTCTTgaattttagtaccgaccccccccctgttttAAACACCC
AAGtccttttgaatttttactatGGTCATTggtcaaagcagtttttttct
gtgagacggaaaaaTTCTTGGTAGAGATATTTTGGTATACAGTGCCACCC
GCAGGCCCAACTATGGTTGGGGGCCGAGAGtcagaaaattttcagatttt
ttacccCCTAGATTGGCTAGAAAGGTACTAAAATTTGTTAATGTTAATCA
AAACAACTCAGAATGTCTTTAAAATGCCTATCATACAGTTTTAATACGAG
ATTTCTTTCTGATGGAATTTTTCTAGAGAATAAAATCCCTATTTCTTGCT
TGATAACCATTTCTAACTGAGAaggaaaactttgacaaaaatttctgtGG
GACAGAAATCCGtttgagacggaagaactttgatcACTGTATGGTCATAG
GGTCAGCCCAGGTCTAGGTCCTAGGCAAAAAAATAGTCCGCCCAAATATT
AGAAGTTTTTTTAAGCAGCCCCCAGTCCTATACCTagtataaaatatttg
ttaatTTAATATCGTTTTTAGGAAAATCACACTCTATTCTTTTGTCATTC
TCGAAATCTTTACGGTTTTTAAGATGTAAAAAAGGCCTTTATTTTGTGGC
TGAAAATGACTATAATCTGCAGTAGCGTGGTGGTTCGACTAAAGTTCGGT
CAAGATTTTGATTATGACACCCACTAGCTATGATAAGTCAAAATGTCTTT
TAAAAAACGCACTCAAAGCAAGCACAAATATTTTGGGGTTTTTCCTctct
tttttggccaaaaactgCCATATTATCTAGTAATCAGTAGCATCTTTTTG
CGCCCTTTGTTTTTCGGCGCCTCGagctgccaccacgctactgtatAATG
GTTAATTCAAGATGGTAGCTACAAGTGAAAACAAACAGAATCAATAGAct
gtaaaaaaggtttttggaTAAAAACGTGGTGATATAAAGAAAAACACAAT
AAAAGAAATAGTCAGCCCCCAGCTTTGCCATTAAAATTCCGccccccaaa
catatcaggtccccccaaatatttggcTGTATTTTAGATCCcggttttca
tttcaatttttttgggtGTAACCCACCAAAAGTCAGGGGGGGTTGACCCT
ATGATGAGAgatcaaatagacctttttctaGACGCAAGATCATTTTGACT
CTATAATAAATTAGAAGAGAAAACATAATGTAATTTCAATAACAACAGAA
TAACCTGATAGCAGAtcgattaaaatgtcaaatgtcgagtactaaaattt
caaaaaaattgtgagtattcgatcactttcttaacaacccttcgaAGACT
CGATAACTGCTCCTTTGATTGTTatctccaccaagtttatcaatcatact
ttctgtcataacatgtcacaataactttcactgatatgatagcgcgccct
tttaaactttttcgttttcattcaaaatgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046225-exon-scaffold_106-1491911889:478423..480753 | TCONS_00046225-exon-scaffold_106-1491911889:478423..480753 | Clytia hemisphaerica | exon |
| TCONS_00046225-exon-scaffold_106-1510915933:478423..480753 | TCONS_00046225-exon-scaffold_106-1510915933:478423..480753 | Clytia hemisphaerica | exon |
| TCONS_00046225-exon-scaffold_106-1575043694:478423..480753 | TCONS_00046225-exon-scaffold_106-1575043694:478423..480753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:478423..480753 . |
Blast
The following BLAST results are available for this feature:
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