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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046218 ID=TCONS_00046218|Name=TCONS_00046218|organism=Clytia hemisphaerica|type=transcript|length=968bp
GTCCATCATCTTGGTGCTACAGCGTAATCCATTGACTTGTTCACTGATGC
TTTTTGAATTTGTGAGATTTCTTGGATGCTTAGATCTGTCACAGCATGAT
TGTTGCTGTAAAGTTTCGTTATGATTTGCTGCTTCATAAATATACGTTCC
AGGGACAGTTACATACTCCCTAGATTCGTCATTCGatgaaatattttctt
gacACAAATCATTCGGAGAATTAACCATCGAGGtttctcttatttgattt
gTAGGCAATGGTGATTCTCggctttcattgtttttatgtaGAAGGCTAGT
GTTATGTTGAGAGACATCTTGTTCACCGTGTTTGCTTTTCATAACACCAA
CATAGATCCTGGGTAAAATGAAACAAACCAGAAAAAGGACGCCAGTGAGT
TGGTTACCAAAGCATACCAACACGAAATCATGATAACTACTTATAAAAAC
ATACCCCAATGCAAAAACTATCAAAAGTAAAGAAACGTTCAAACAGccaa
aagttaaaaactgacGCTCGTAGAAAATTTGTTTGAGGTTACGTTCACGA
AAAGCGAAAAAGGACGCGAAAGCCAACTGGATGGTCGGTACACAAAACAG
AATCAAGCTCATAGATGTCGTTTTCACCAAGCACCATTTTTTGATAACAA
ACCCATTGTCTTTACTGGGGTTTTCTATACAGACTTGTGACTGCATTCCT
TGGTTACAAAGCTTCACATCAGCACCAAACTTATACGCCAAGGAGCCGAT
TTGTACCAACATTACAAACGAAATGAACATTATTCTTGTCGACAAAATAT
TCCCTTTGAACATCATGCCAGAGTACTCTTTGAGAGCTGTGTGAACTTGC
TGAGTCATCAATAATAGAAACATACTGAAAGCTTgtagtaataaaaaaaa
taacgagGTTCGTATGATGCATGATCCTTCAGTCGGTTCAACGATTTGAA
AAATAGCGAACACATAAT Run BLAST on NCBI protein sequence of TCONS_00046218-protein >TCONS_00046218-protein ID=TCONS_00046218-protein|Name=TCONS_00046218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
YVFAIFQIVEPTEGSCIIRTSLFFLLLQAFSMFLLLMTQQVHTALKEYSG
MMFKGNILSTRIMFISFVMLVQIGSLAYKFGADVKLCNQGMQSQVCIENP
SKDNGFVIKKWCLVKTTSMSLILFCVPTIQLAFASFFAFRERNLKQIFYE
RQFLTFGCLNVSLLLIVFALGYVFISSYHDFVLVCFGNQLTGVLFLVCFI
LPRIYVGVMKSKHGEQDVSQHNTSLLHKNNESRESPLPTNQIRETSMVNS
PNDLCQENISSNDESREYVTVPGTYIYEAANHNETLQQQSCCDRSKHPRN
LTNSKSISEQVNGLRCSTKMMD Run BLAST on NCBI transcript from alignment at scaffold_106:173057..174024 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046218 ID=TCONS_00046218|Name=TCONS_00046218|organism=Clytia hemisphaerica|type=transcript|length=968bp|location=Sequence derived from alignment at scaffold_106:173057..174024 (Clytia hemisphaerica)
ATTATGTGTTCGCTATTTTTCAAATCGTTGAACCGACTGAAGGATCATGC
ATCATACGAACctcgttattttttttattactacAAGCTTTCAGTATGTT
TCTATTATTGATGACTCAGCAAGTTCACACAGCTCTCAAAGAGTACTCTG
GCATGATGTTCAAAGGGAATATTTTGTCGACAAGAATAATGTTCATTTCG
TTTGTAATGTTGGTACAAATCGGCTCCTTGGCGTATAAGTTTGGTGCTGA
TGTGAAGCTTTGTAACCAAGGAATGCAGTCACAAGTCTGTATAGAAAACC
CCAGTAAAGACAATGGGTTTGTTATCAAAAAATGGTGCTTGGTGAAAACG
ACATCTATGAGCTTGATTCTGTTTTGTGTACCGACCATCCAGTTGGCTTT
CGCGTCCTTTTTCGCTTTTCGTGAACGTAACCTCAAACAAATTTTCTACG
AGCgtcagtttttaacttttggCTGTTTGAACGTTTCTTTACTTTTGATA
GTTTTTGCATTGGGGTATGTTTTTATAAGTAGTTATCATGATTTCGTGTT
GGTATGCTTTGGTAACCAACTCACTGGCGTCCTTTTTCTGGTTTGTTTCA
TTTTACCCAGGATCTATGTTGGTGTTATGAAAAGCAAACACGGTGAACAA
GATGTCTCTCAACATAACACTAGCCTTCtacataaaaacaatgaaagccG
AGAATCACCATTGCCTAcaaatcaaataagagaaaCCTCGATGGTTAATT
CTCCGAATGATTTGTgtcaagaaaatatttcatCGAATGACGAATCTAGG
GAGTATGTAACTGTCCCTGGAACGTATATTTATGAAGCAGCAAATCATAA
CGAAACTTTACAGCAACAATCATGCTGTGACAGATCTAAGCATCCAAGAA
ATCTCACAAATTCAAAAAGCATCAGTGAACAAGTCAATGGATTACGCTGT
AGCACCAAGATGATGGAC Coding sequence (CDS) from alignment at scaffold_106:173057..174024 >TCONS_00046218 ID=TCONS_00046218|Name=TCONS_00046218|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_106:173057..174024 (Clytia hemisphaerica)
TATGTGTTCGCTATTTTTCAAATCGTTGAACCGACTGAAGGATCATGCAT
CATACGAACctcgttattttttttattactacAAGCTTTCAGTATGTTTC
TATTATTGATGACTCAGCAAGTTCACACAGCTCTCAAAGAGTACTCTGGC
ATGATGTTCAAAGGGAATATTTTGTCGACAAGAATAATGTTCATTTCGTT
TGTAATGTTGGTACAAATCGGCTCCTTGGCGTATAAGTTTGGTGCTGATG
TGAAGCTTTGTAACCAAGGAATGCAGTCACAAGTCTGTATAGAAAACCCC
AGTAAAGACAATGGGTTTGTTATCAAAAAATGGTGCTTGGTGAAAACGAC
ATCTATGAGCTTGATTCTGTTTTGTGTACCGACCATCCAGTTGGCTTTCG
CGTCCTTTTTCGCTTTTCGTGAACGTAACCTCAAACAAATTTTCTACGAG
CgtcagtttttaacttttggCTGTTTGAACGTTTCTTTACTTTTGATAGT
TTTTGCATTGGGGTATGTTTTTATAAGTAGTTATCATGATTTCGTGTTGG
TATGCTTTGGTAACCAACTCACTGGCGTCCTTTTTCTGGTTTGTTTCATT
TTACCCAGGATCTATGTTGGTGTTATGAAAAGCAAACACGGTGAACAAGA
TGTCTCTCAACATAACACTAGCCTTCtacataaaaacaatgaaagccGAG
AATCACCATTGCCTAcaaatcaaataagagaaaCCTCGATGGTTAATTCT
CCGAATGATTTGTgtcaagaaaatatttcatCGAATGACGAATCTAGGGA
GTATGTAACTGTCCCTGGAACGTATATTTATGAAGCAGCAAATCATAACG
AAACTTTACAGCAACAATCATGCTGTGACAGATCTAAGCATCCAAGAAAT
CTCACAAATTCAAAAAGCATCAGTGAACAAGTCAATGGATTACGCTGTAG
CACCAAGATGATGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046218-exon-scaffold_106-1491911889:173057..174024 | TCONS_00046218-exon-scaffold_106-1491911889:173057..174024 | Clytia hemisphaerica | exon |
| TCONS_00046218-exon-scaffold_106-1510915933:173057..174024 | TCONS_00046218-exon-scaffold_106-1510915933:173057..174024 | Clytia hemisphaerica | exon |
| TCONS_00046218-exon-scaffold_106-1575043694:173057..174024 | TCONS_00046218-exon-scaffold_106-1575043694:173057..174024 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:173057..174024 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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