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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046213 ID=TCONS_00046213|Name=TCONS_00046213|organism=Clytia hemisphaerica|type=transcript|length=1607bp
agaaaatattatttattatCGTTTGTTATTGATATTATTAATTTAAAAAT
ACTCAAATAATACAAAAGTTAATAACATTTAGGCTCCTAGAAatgaaagt
aaataaatgattttttttaacgaATTGTCAATAACCTTTAAAAAATGTCC
AACGGTGTGGTTTAGAGAAAATATTCCCCTCGAAAATTGCGACCAAAGCA
AACAAATTGAAagcttcaaaacaaagtttaaaAGTCTTCATGTCTCAACT
ATTTAATACATGACTCTTCCGAGACAGAAGTTGACACATTCCCAATATTC
TCCTGTCAGAATATGTTTCATCAAAGAGACTGGGATTTGAGCGTGGTGGT
AAACAATGTAAGGGATTGGGTCCGAGCTATCCCACAATGCCTCATACCCA
AAcaccaaaatcttgaaaaaatccATCATGTTCCTTTTCAAAGTGAGCAT
GCGGAAGAATTCTTGGTAAAACCAATAAGTGAATATGTTCGGATTAGGTT
GTAGTGGCTTTGAAAAATGGATTTGCGTTTCTTCGAAAAGTGAGAGAAGA
CTTCTTTCGAAACTCTTGGTGTCGATATAGTTGACCAATGAGGAATGGAA
CCGAGGATTACATTCCAAACAATAGATATCACCCATTTTGTCCtcgatga
aatcaaaacaaacagctCCTGTTAAATTTGTTTTGCGACAAAAGTCGGTC
AcccattttgtgatttttggatgctgaatgacgtcataatcgacCTGGAT
TGGCGAGGAATGAGCTAAGTTGAGTTGAACAATTTCTCCATCTTTTGAGA
GAAGATTGGCTGATAATTCGGTACCGTGAATATATTCTTGAGCAAAGAAA
ATCTCATCGCGAAAACTTTTCATGAAGTTTTTTATTTGTGTTAAATCGGC
CGGTATTCGTTCAAAAGAGTTCCGGAATACGGACGAACATGCGGACGgtt
taaagaaaaagaagcgGTCCTGAAAATAACCATCGCTAGCCATGCTGTAG
AGCTTCTCTTCAGAATCAACAAATTCGGGAACCGATAAACCATATTCTTT
ACATTTCCTCATGAAATCGATTTTCTCATCTAACTGTTTGATTTGTGTGG
GATTTGACACCAAACATTTAATATTTTGTTGTGTAAGATATTCACCGATG
CGAGCGTCAGCCATAGCGTAATCTTTCTTAATGACGGGTATGAAATAATC
AACTTTCTCATGAACACCTATGTTGATGACTTGTTGAACATATTCAGTTT
GGTTTGAAGACACTGAATATACTTTACTCACATATCTGGACCATCTCAAG
ACAGACCAAGGACCAACCCAATCTGCAATTATAACTGTATGTCCAGCTTT
TCCAAGCGCCCGGATTATATGAACGGCTTTGGTTGCTGTATCACCAGTGA
TCAAAATTCTACGTCTCAAATGTCCTGGCAGCAAATTCTCCTCGTATTTC
TTACGCCCAAACAGCCAGAAAACCAAAGACCAGAAAATACACAACGGTGT
TAGCCATAGTATAATTGCAAGATAGAAAACACAGAATAAtcgtcttttta
atttttcagataacattGTTTCTGTTGCCTTTTCCGCTTGCTGTCCTTAG
ATGATAT Run BLAST on NCBI protein sequence of TCONS_00046213-protein >TCONS_00046213-protein ID=TCONS_00046213-protein|Name=TCONS_00046213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
MLSEKLKRRLFCVFYLAIILWLTPLCIFWSLVFWLFGRKKYEENLLPGHL
RRRILITGDTATKAVHIIRALGKAGHTVIIADWVGPWSVLRWSRYVSKVY
SVSSNQTEYVQQVINIGVHEKVDYFIPVIKKDYAMADARIGEYLTQQNIK
CLVSNPTQIKQLDEKIDFMRKCKEYGLSVPEFVDSEEKLYSMASDGYFQD
RFFFFKPSACSSVFRNSFERIPADLTQIKNFMKSFRDEIFFAQEYIHGTE
LSANLLSKDGEIVQLNLAHSSPIQVDYDVIQHPKITKWVTDFCRKTNLTG
AVCFDFIEDKMGDIYCLECNPRFHSSLVNYIDTKSFERSLLSLFEETQIH
FSKPLQPNPNIFTYWFYQEFFRMLTLKRNMMDFFKILVFGYEALWDSSDP
IPYIVYHHAQIPVSLMKHILTGEYWECVNFCLGRVMY Run BLAST on NCBI transcript from alignment at scaffold_106:134435..136041 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046213 ID=TCONS_00046213|Name=TCONS_00046213|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at scaffold_106:134435..136041 (Clytia hemisphaerica)
ATATCATCTAAGGACAGCAAGCGGAAAAGGCAACAGAAACaatgttatct
gaaaaattaaaaagacgaTTATTCTGTGTTTTCTATCTTGCAATTATACT
ATGGCTAACACCGTTGTGTATTTTCTGGTCTTTGGTTTTCTGGCTGTTTG
GGCGTAAGAAATACGAGGAGAATTTGCTGCCAGGACATTTGAGACGTAGA
ATTTTGATCACTGGTGATACAGCAACCAAAGCCGTTCATATAATCCGGGC
GCTTGGAAAAGCTGGACATACAGTTATAATTGCAGATTGGGTTGGTCCTT
GGTCTGTCTTGAGATGGTCCAGATATGTGAGTAAAGTATATTCAGTGTCT
TCAAACCAAACTGAATATGTTCAACAAGTCATCAACATAGGTGTTCATGA
GAAAGTTGATTATTTCATACCCGTCATTAAGAAAGATTACGCTATGGCTG
ACGCTCGCATCGGTGAATATCTTACACAACAAAATATTAAATGTTTGGTG
TCAAATCCCACACAAATCAAACAGTTAGATGAGAAAATCGATTTCATGAG
GAAATGTAAAGAATATGGTTTATCGGTTCCCGAATTTGTTGATTCTGAAG
AGAAGCTCTACAGCATGGCTAGCGATGGTTATTTTCAGGACcgcttcttt
ttctttaaacCGTCCGCATGTTCGTCCGTATTCCGGAACTCTTTTGAACG
AATACCGGCCGATTTAACACAAATAAAAAACTTCATGAAAAGTTTTCGCG
ATGAGATTTTCTTTGCTCAAGAATATATTCACGGTACCGAATTATCAGCC
AATCTTCTCTCAAAAGATGGAGAAATTGTTCAACTCAACTTAGCTCATTC
CTCGCCAATCCAGgtcgattatgacgtcattcagcatccaaaaatcacaa
aatgggTGACCGACTTTTGTCGCAAAACAAATTTAACAGGagctgtttgt
tttgatttcatcgaGGACAAAATGGGTGATATCTATTGTTTGGAATGTAA
TCCTCGGTTCCATTCCTCATTGGTCAACTATATCGACACCAAGAGTTTCG
AAAGAAGTCTTCTCTCACTTTTCGAAGAAACGCAAATCCATTTTTCAAAG
CCACTACAACCTAATCCGAACATATTCACTTATTGGTTTTACCAAGAATT
CTTCCGCATGCTCACTTTGAAAAGGAACATGATggattttttcaagattt
tggtgTTTGGGTATGAGGCATTGTGGGATAGCTCGGACCCAATCCCTTAC
ATTGTTTACCACCACGCTCAAATCCCAGTCTCTTTGATGAAACATATTCT
GACAGGAGAATATTGGGAATGTGTCAACTTCTGTCTCGGAAGAGTCATGT
ATTAAATAGTTGAGACATGAAGACTtttaaactttgttttgaagctTTCA
ATTTGTTTGCTTTGGTCGCAATTTTCGAGGGGAATATTTTCTCTAAACCA
CACCGTTGGACATTTTTTAAAGGTTATTGACAATtcgttaaaaaaaatca
tttatttactttcatTTCTAGGAGCCTAAATGTTATTAACTTTTGTATTA
TTTGAGTATTTTTAAATTAATAATATCAATAACAAACGataataaataat
attttct Coding sequence (CDS) from alignment at scaffold_106:134435..136041 >TCONS_00046213 ID=TCONS_00046213|Name=TCONS_00046213|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_106:134435..136041 (Clytia hemisphaerica)
atgttatctgaaaaattaaaaagacgaTTATTCTGTGTTTTCTATCTTGC
AATTATACTATGGCTAACACCGTTGTGTATTTTCTGGTCTTTGGTTTTCT
GGCTGTTTGGGCGTAAGAAATACGAGGAGAATTTGCTGCCAGGACATTTG
AGACGTAGAATTTTGATCACTGGTGATACAGCAACCAAAGCCGTTCATAT
AATCCGGGCGCTTGGAAAAGCTGGACATACAGTTATAATTGCAGATTGGG
TTGGTCCTTGGTCTGTCTTGAGATGGTCCAGATATGTGAGTAAAGTATAT
TCAGTGTCTTCAAACCAAACTGAATATGTTCAACAAGTCATCAACATAGG
TGTTCATGAGAAAGTTGATTATTTCATACCCGTCATTAAGAAAGATTACG
CTATGGCTGACGCTCGCATCGGTGAATATCTTACACAACAAAATATTAAA
TGTTTGGTGTCAAATCCCACACAAATCAAACAGTTAGATGAGAAAATCGA
TTTCATGAGGAAATGTAAAGAATATGGTTTATCGGTTCCCGAATTTGTTG
ATTCTGAAGAGAAGCTCTACAGCATGGCTAGCGATGGTTATTTTCAGGAC
cgcttctttttctttaaacCGTCCGCATGTTCGTCCGTATTCCGGAACTC
TTTTGAACGAATACCGGCCGATTTAACACAAATAAAAAACTTCATGAAAA
GTTTTCGCGATGAGATTTTCTTTGCTCAAGAATATATTCACGGTACCGAA
TTATCAGCCAATCTTCTCTCAAAAGATGGAGAAATTGTTCAACTCAACTT
AGCTCATTCCTCGCCAATCCAGgtcgattatgacgtcattcagcatccaa
aaatcacaaaatgggTGACCGACTTTTGTCGCAAAACAAATTTAACAGGa
gctgtttgttttgatttcatcgaGGACAAAATGGGTGATATCTATTGTTT
GGAATGTAATCCTCGGTTCCATTCCTCATTGGTCAACTATATCGACACCA
AGAGTTTCGAAAGAAGTCTTCTCTCACTTTTCGAAGAAACGCAAATCCAT
TTTTCAAAGCCACTACAACCTAATCCGAACATATTCACTTATTGGTTTTA
CCAAGAATTCTTCCGCATGCTCACTTTGAAAAGGAACATGATggattttt
tcaagattttggtgTTTGGGTATGAGGCATTGTGGGATAGCTCGGACCCA
ATCCCTTACATTGTTTACCACCACGCTCAAATCCCAGTCTCTTTGATGAA
ACATATTCTGACAGGAGAATATTGGGAATGTGTCAACTTCTGTCTCGGAA
GAGTCATGTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046213-exon-scaffold_106-1491911889:134435..136041 | TCONS_00046213-exon-scaffold_106-1491911889:134435..136041 | Clytia hemisphaerica | exon |
| TCONS_00046213-exon-scaffold_106-1510915933:134435..136041 | TCONS_00046213-exon-scaffold_106-1510915933:134435..136041 | Clytia hemisphaerica | exon |
| TCONS_00046213-exon-scaffold_106-1575043694:134435..136041 | TCONS_00046213-exon-scaffold_106-1575043694:134435..136041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:134435..136041 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003806 | ATP-grasp_DUF201-type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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