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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046207 ID=TCONS_00046207|Name=TCONS_00046207|organism=Clytia hemisphaerica|type=transcript|length=1676bp
CTTGCTCTCGTCGAGTTCGGTCGTGCTcttttcaaaacttcaaaaagggc
gtgtgattttctgacttgtttttaatattaaaGTTGCTTTGATATTATAC
TAACACAATCATCATGGAGGAATATAATATTACTCAAANCAAATTATAGT
CCAAACCCAAAGAGTGACAGTTATCCTTTATTTTGTAAATTCCAATTGAT
CAAGTACAAACCATGGAATGATTCTGTAGACAGTCTCTGGGAAGGTCTAC
AAGCAACAAATGAGACATATTGCCAGAAATGGAAAGAATTCATTAACAGC
TCTTTAGGAAGAGAATTAGTTCCAAATTGGAGAATGCATTACATCAATGC
AAACAATTTCGAATATCAGGTCGAAGATGAGGAAAATATagaggaagaaa
gtgaaaatatttttttacgtgAAGATTGGATGGATATAGCTGACCTGAAT
TCCATGCCCAATAATGTTTCTTCAGAAAATCAAGAGTATTGGACTGATTC
TTTTGATTCTTATACTCAAGAGCAAATTAATGCAATGCCCTTTTGgattg
aagaaaagaaaaagacttttgaaaacgaaaatctCATAGATTATAGTCAA
TATCAGGTAGAAAACTTAAATGAAGAACAGCTCCAAGCTTACAATATTGT
ACATAATCATGCCCAAAATACCAATGCAGACTCTTTACAAATGATAATTA
CTGGGATTGCAGGGAGTGGAAAGTCATATTTAATCAATTGCATTAAAAAA
CTCCTTGGCAAAAAGTGTTTATTGACATCTTATTTTGGTATTGGTATCAA
AACTACTAAGGTTCTTGCTCTCGTCGAGTTCGGTCGTGCTcttttcaaaa
cttcaaaaagggcgtgtgattttctgacttgtttttaatattaaaGTTGC
TTTGATATTATACTAACACAATCATCATGGAGGAATATAATATTACTcaa
agaaaaaagcaaagatCAAGTTCACTAACTTCATCAGCTCCATCAAACAT
TCAAAGTCATGAAAAGGATGCCTCCACTCACATTGAAGGAAATATTTGGT
TTTTTGATTCAACAAACACTGATCAAACAGATAATAACAATCAAGAGGAA
GGTATGCTCAGTCCACCTATCACCAATGGTAAATCTTCTCCTTTCACAAA
GAACCAAATGGACTTCATTAATCTATTATTAAATGatcaaaaagaagaaa
tgaCCAATGAAATCAACAAACTTAAGAATGAACTTAAaaccaaagataaa
caaatctTTCGACTAGAGAAAGACCTGATTGATATTCAACAATATGTTCG
CCGCAACAACATTGAAATCCATGGTATCCCCGACACAGTTGAACAGAAAG
ATCTGGAAAAGAAAGTTGTAGAGGTTTGTTCAGCCTTGAATGTTCATGTT
AAAAAGCAAGATATTGAGGCTTGTCACCGTTTAGCAGATAAGACTAAAGG
GAATACCCCGAAAAAGACTATTGTACGCTTTACCAACAGAAAGTTCTGGG
ATGACCTTCaccgaaacaaaaaaatgcttaaAGATGGTAATAACAAAAAC
ATTAGAAGGAAATTCCACAATATGGGACTTGataattcaaaaactttcat
cAACAACAATCTTTGTCCCTATAACAAATTCCTCTGGGGTAAATGCAAAC
AATTACATACTGCACAGCTCATTGAC Run BLAST on NCBI protein sequence of TCONS_00046207-protein >TCONS_00046207-protein ID=TCONS_00046207-protein|Name=TCONS_00046207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MEEYNITQRKKQRSSSLTSSAPSNIQSHEKDASTHIEGNIWFFDSTNTDQ
TDNNNQEEGMLSPPITNGKSSPFTKNQMDFINLLLNDQKEEMTNEINKLK
NELKTKDKQIFRLEKDLIDIQQYVRRNNIEIHGIPDTVEQKDLEKKVVEV
CSALNVHVKKQDIEACHRLADKTKGNTPKKTIVRFTNRKFWDDLHRNKKM
LKDGNNKNIRRKFHNMGLDNSKTFINNNLCPYNKFLWGKCKQLHTAQLID Run BLAST on NCBI transcript from alignment at scaffold_106:18017..19692 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046207 ID=TCONS_00046207|Name=TCONS_00046207|organism=Clytia hemisphaerica|type=transcript|length=1676bp|location=Sequence derived from alignment at scaffold_106:18017..19692 (Clytia hemisphaerica)
GTCAATGAGCTGTGCAGTATGTAATTGTTTGCATTTACCCCAGAGGAATT
TGTTATAGGGACAAAGATTGTTGTTgatgaaagtttttgaattatCAAGT
CCCATATTGTGGAATTTCCTTCTAATGTTTTTGTTATTACCATCTttaag
catttttttgtttcggtGAAGGTCATCCCAGAACTTTCTGTTGGTAAAGC
GTACAATAGTCTTTTTCGGGGTATTCCCTTTAGTCTTATCTGCTAAACGG
TGACAAGCCTCAATATCTTGCTTTTTAACATGAACATTCAAGGCTGAACA
AACCTCTACAACTTTCTTTTCCAGATCTTTCTGTTCAACTGTGTCGGGGA
TACCATGGATTTCAATGTTGTTGCGGCGAACATATTGTTGAATATCAATC
AGGTCTTTCTCTAGTCGAAagatttgtttatctttggttTTAAGTTCATT
CTTAAGTTTGTTGATTTCATTGGtcatttcttctttttgatCATTTAATA
ATAGATTAATGAAGTCCATTTGGTTCTTTGTGAAAGGAGAAGATTTACCA
TTGGTGATAGGTGGACTGAGCATACCTTCCTCTTGATTGTTATTATCTGT
TTGATCAGTGTTTGTTGAATCAAAAAACCAAATATTTCCTTCAATGTGAG
TGGAGGCATCCTTTTCATGACTTTGAATGTTTGATGGAGCTGATGAAGTT
AGTGAACTTGatctttgcttttttctttgAGTAATATTATATTCCTCCAT
GATGATTGTGTTAGTATAATATCAAAGCAACtttaatattaaaaacaagt
cagaaaatcacacgccctttttgaagttttgaaaagAGCACGACCGAACT
CGACGAGAGCAAGAACCTTAGTAGTTTTGATACCAATACCAAAATAAGAT
GTCAATAAACACTTTTTGCCAAGGAGTTTTTTAATGCAATTGATTAAATA
TGACTTTCCACTCCCTGCAATCCCAGTAATTATCATTTGTAAAGAGTCTG
CATTGGTATTTTGGGCATGATTATGTACAATATTGTAAGCTTGGAGCTGT
TCTTCATTTAAGTTTTCTACCTGATATTGACTATAATCTATGagattttc
gttttcaaaagtctttttcttttcttcaatcCAAAAGGGCATTGCATTAA
TTTGCTCTTGAGTATAAGAATCAAAAGAATCAGTCCAATACTCTTGATTT
TCTGAAGAAACATTATTGGGCATGGAATTCAGGTCAGCTATATCCATCCA
ATCTTcacgtaaaaaaatattttcactttcttcctctATATTTTCCTCAT
CTTCGACCTGATATTCGAAATTGTTTGCATTGATGTAATGCATTCTCCAA
TTTGGAACTAATTCTCTTCCTAAAGAGCTGTTAATGAATTCTTTCCATTT
CTGGCAATATGTCTCATTTGTTGCTTGTAGACCTTCCCAGAGACTGTCTA
CAGAATCATTCCATGGTTTGTACTTGATCAATTGGAATTTACAAAATAAA
GGATAACTGTCACTCTTTGGGTTTGGACTATAATTTGNTTTGAGTAATAT
TATATTCCTCCATGATGATTGTGTTAGTATAATATCAAAGCAACtttaat
attaaaaacaagtcagaaaatcacacgccctttttgaagttttgaaaagA
GCACGACCGAACTCGACGAGAGCAAG Coding sequence (CDS) from alignment at scaffold_106:18017..19692 >TCONS_00046207 ID=TCONS_00046207|Name=TCONS_00046207|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_106:18017..19692 (Clytia hemisphaerica)
GTCAATGAGCTGTGCAGTATGTAATTGTTTGCATTTACCCCAGAGGAATT
TGTTATAGGGACAAAGATTGTTGTTgatgaaagtttttgaattatCAAGT
CCCATATTGTGGAATTTCCTTCTAATGTTTTTGTTATTACCATCTttaag
catttttttgtttcggtGAAGGTCATCCCAGAACTTTCTGTTGGTAAAGC
GTACAATAGTCTTTTTCGGGGTATTCCCTTTAGTCTTATCTGCTAAACGG
TGACAAGCCTCAATATCTTGCTTTTTAACATGAACATTCAAGGCTGAACA
AACCTCTACAACTTTCTTTTCCAGATCTTTCTGTTCAACTGTGTCGGGGA
TACCATGGATTTCAATGTTGTTGCGGCGAACATATTGTTGAATATCAATC
AGGTCTTTCTCTAGTCGAAagatttgtttatctttggttTTAAGTTCATT
CTTAAGTTTGTTGATTTCATTGGtcatttcttctttttgatCATTTAATA
ATAGATTAATGAAGTCCATTTGGTTCTTTGTGAAAGGAGAAGATTTACCA
TTGGTGATAGGTGGACTGAGCATACCTTCCTCTTGATTGTTATTATCTGT
TTGATCAGTGTTTGTTGAATCAAAAAACCAAATATTTCCTTCAATGTGAG
TGGAGGCATCCTTTTCATGACTTTGAATGTTTGATGGAGCTGATGAAGTT
AGTGAACTTGatctttgcttttttctttgAGTAATATTATATTCCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046207-exon-scaffold_106-1491911889:18017..19692 | TCONS_00046207-exon-scaffold_106-1491911889:18017..19692 | Clytia hemisphaerica | exon |
| TCONS_00046207-exon-scaffold_106-1510915933:18017..19692 | TCONS_00046207-exon-scaffold_106-1510915933:18017..19692 | Clytia hemisphaerica | exon |
| TCONS_00046207-exon-scaffold_106-1575043694:18017..19692 | TCONS_00046207-exon-scaffold_106-1575043694:18017..19692 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:18017..19692 . |
Blast
The following BLAST results are available for this feature:
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