|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046192 ID=TCONS_00046192|Name=TCONS_00046192|organism=Clytia hemisphaerica|type=transcript|length=1637bp
TGACAACTGACTTTAATTTAAAAGAGGTCTAAAAGTGGTATATTCCCAGG
AGGAAAATGAGTATGTTAGACGATAAAAAGAGATCACCAAAATGTGCACG
ATGCAGGAACCATGGATTCGATTCTTCATTGAAAGGCCATAAAGGATATT
GTCGATGGAGAGATTGTATGTGCCCGAAATGTGTACTCATTGTTGAACGC
CAACGGGTCTTAGCGGCGCAAGTTGCGTTACGCAGACAACAAATGCAAGA
GAGTAAACAAAGACCAGGCCCATTACCAAGAGGAGATGGATTTTCAACTA
AAACCCAATTATCACCTAATGAAGCATTACAACgcacaaaagaaaatgaa
attaaagTggaaaatattgagaacaaaCCAAGTGTTGTGTCGCCAGGGCC
TGAGCACAAGCCAAAGTCACCCAATATCaaagaatttaaagaaaaattac
caaaaatgaCAGGTCGACCATCAATTCCGTCTCTATCGCCACACCAAGCT
TACTCACCGCCCTTCTATTACAGAAAACCAATATTCTTCAAGGAACCCCC
TTCTGCATTCCAGATGTGGGCACCTCATTTAACCAAAGCTCGATTCCACG
GCTCACCTCGTGAAATGCAACGATTCACGCCTTACCCATCACCACCTCCA
CCCACAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTTG
TTACATCGATGAATACTGCACTAAGAAATCTTTCGTATATCCTCCACCGG
CCAACATGCGCCATGAATACATCTCACACTCAAATCCAGTTTTCCAgtcc
aaaacaaaagaaccagTCGATCTAAATAACAACAAGGCGACAACAAAAGG
tccaaaatctccacattattCACCAGTTGGTCGAATCTCACCGCAATCAA
ATAACGACCTATCTTCACCTTCATCGTACGGTCGACAGCGATCACCATTC
ATGGATCGTCGCTCTCCCTCCTACATTGACCACCACGGTAGATCTCCATA
CGGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCCACCATCCT
TCGATTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGCA
TCGCCTACACCGGGAGTAACATCACCGAAAGACACTTCTAAAACAGACTC
ACATGCTAATACTCCATCTATCGAAATGCTTGCAAGATTATTCCCACGAC
ATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGCAATAATGATCCT
GTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAGataataa
caacaacaataGCATCAATCAAAAACTTCCACCTGTCAAAAACACTTACT
CAGCAAAACGAAATGAACCAATTATTGACAATAAACATGGAAGTAATGAC
GATCTATCAAATCTAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGAA
AATTAGAAGTCCGAAAGTTGTACACTGGTAACATAAAAAATCCTCTTGTA
TAATAAAATACTGTTCAGCCTGAAATATTATGTATTTTTTTGTCTGTAAA
TACGCAACTCAATTGTAAATGATTAAATTATCAAACTtctaatttatgaa
aaatataatttggcTTCACAAGCTGTATGTAAATAAT Run BLAST on NCBI transcript from alignment at scaffold_106:413931..419913- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046192 ID=TCONS_00046192|Name=TCONS_00046192|organism=Clytia hemisphaerica|type=transcript|length=5983bp|location=Sequence derived from alignment at scaffold_106:413931..419913- (Clytia hemisphaerica)
TGACAACTGACTTTAATTTAAAAGAGGTCTAAAAGTGGTATATTCCCAGG
AGGAAAATGAGTATGTTAGACGATAAAAAGAGATCACCAAAATGTGCACG
ATGCAGGAACCATGGATTCGATTCTTCATTGAAAGGCCATAAAGGATATT
GTCGATGGAGAGATTGTATGTGCCCGAAATGTGTACTCATTGTTGAACGC
CAACGGGTCTTAGCGGCGCAAGTTGCGTTACGCAGACAACAAATGCAAGA
GAGTAAACAAAGACCAGGCCCATTACCAAGAGGAGATGGATTTTCAACTA
AAACCCAATTATCACCTAATGAAGCATTACAACGCACAAAAGAAAATGAA
ATTAAAGGTAATGAAATTTTTAATTTTTCAAAGTTTAAAATTTAATACAG
TCAAGCAATATATCTCGGTGGTATGGTGATACCACTCAAGCTTCTAAAAA
CAAAAACTTTAACAATAATTAATTTCAAATTTAATTTTAATTTTTCATTT
CGATAGTTGTGAAAATACCTTGAAAGTGTTACATTTTACAAAACGTGTGC
TGAAGCTCTGCCGTTACGCATCTAATGCAATATGTTGGGAGGCATTTTGA
AACTGGGGCTACTGGTGATCATTAAGGGATATCGAGCAAACATACATACA
CTGTGTAAACATGATTTCTTATCAAATTTATCATCGGGTTAAATCAATTT
TTGTATGTTCTGGCTGCTGAGCTTTTTAAAGGCTCTTCATATATATGTTA
ATTTTTTTAAATTCTGACTTTGATCAAAGAATATTTCGGCGCGGTCTTTT
TCCTACGATTGGGCGAACTCGATACAAATTTCCCTATCACGCAAACTACC
GCAAACAAATAGAACATCTGGCTCATCACTATTAGAATATTGAGAACACG
TAGCAAAAATAAAATATACGAGAAATGTATATAAAAATATTTTTGTAACG
AAAGACAAAAGCAAGGATAGGCCCCCGTGCAGTGAAAAAACGTAACAGCC
GTTAGACGGGTTTTGTTGACAAAATAGTTTTCAAAAAGATGGAAGATGGT
AAATTATATCGAAAATTTTGTATTTTGTTTCAAAAAAAAAAGAAGAAGAT
ATTTTTACAAAATTTCCTTCAAGATGTTCACTGAGTAACTCAAAACAATG
AAAAAATAATAAAAATGAGGGGAAATAGAAACATCTAACAAAACAATTAC
TTTTTTATGACTTCATTTCAATGTAGGCACAGCATGATTTATCAAACTTT
TTCCAACGTTTATTTAATTTCTTTTTCTGGCTCCCCCCTGACAGCGTACT
AGAAAATAAATAGGGTGCAATATGTGCCATATTTGATGAAAATAACTCGC
AAACGTTTTGTTTCAATATTGTAACAACAGTTTTTTTGTCAAAAAGGCAC
CCTATTGTGATGACGAGTCATGTTGATAAAAATATTCCTTTTCATTATTT
TAGTGGAGAACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAG
CACAAACCAAAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAAA
GATGACAGGTACGTTGCCCCTCCCAAAAGATTAATCAATTAAAGTCGCCT
ATTGTTTTTAGCTTTGTATTGTTCTTGTAAAGGTTCGAATGAAAGAAACG
GTACAATATACAATAACTATTTAAAAGTTATCTTAGTATCTTTTTTTCTT
GAATCCCCTGTTGTTTTTCTTTTTTGCTTCGTGTTTCAAAGTGAAGCTAC
CTGACCAGATGTGAACATATGCTTCAAATAATTTGCCATTGTTTTCTCCC
TTCTTCACTTAACCCTTCCTTTGTTTCTTTTGCCCAATTGGACATCTGAG
GAGTAGGTTAATCGATATTTGAATATGTTTTATCCAGATTATCTCTCCAC
AAAGTCAAATTTGTTTAAACAAATTTGTTTCGATCTGTCAATGTTTCATT
TTATTATATTTCTATCTCTTATCNCCCAATTATCACCTAATGAAGCATTA
CAACGCACAAAAGAAAATGAAATTAAAGGTAATGAAATTTTTAATTTTTC
AAAGTTTAAAATTTAATACAGTCAAGCAATATATCTCGGTGGTATGGTGA
TACCACTCAAGCTTCTAAAAACAAAAACTTTAACAATAATTAATTTCAAA
TTTAATTTTAATTTTTCATTTCGATAGTTGTGAAAATACCTTGAAAGTGT
TACATTTTACAAAACGTGTGCTGAAGCTCTGCCGTTACGCATCTAATGCA
ATATGTTGGGAGGCATTTTGAAACTGGGGCTACTGGTGATCATTAAGGGA
TATCGAGCAAACATACATACACTGTGTAAACATGATTTCTTATCAAATTT
ATCATCGGGTTAAATCAATTTTTGTATGTTCTGGCTGCTGAGCTTTTTAA
AGGCTCTTCATATATATGTTAATTTTTTTAAATTCTGACTTTGATCAAAG
AATATTTCGGCGCGGTCTTTTTCCTACGATTGGGCGAACTCGATACAAAT
TTCCCTATCACGCAAACTACCGCAAACAAATAGAACATCTGGCTCATCAC
TATTAGAATATTGAGAACACGTAGCAAAAATAAAATATACGAGAAATGTA
TATAAAAATATTTTTGTAACGAAAGACAAAAGCAAGGATAGGCCCCCGTG
CAGTGAAAAAACGTAACAGCCGTTAGACGGGTTTTGTTGACAAAATAGTT
TTCAAAAAGATGGAAGATGGTAAATTATATCGAAAATTTTGTATTTTGTT
TCAAAAAAAAAAGAAGAAGATATTTTTACAAAATTTCCTTCAAGATGTTC
ACTGAGTAACTCAAAACAATGAAAAAATAATAAAAATGAGGGGAAATAGA
AACATCTAACAAAACAATTACTTTTTTATGACTTCATTTCAATGTAGGCA
CAGCATGATTTATCAAACTTTTTCCAACGTTTATTTAATTTCTTTTTCTG
GCTCCCCCCTGACAGCGTACTAGAAAATAAATAGGGTGCAATATGTGCCA
TATTTGATGAAAATAACTCGCAAACGTTTTGTTTCAATATTGTAACAACA
GTTTTTTTGTCAAAAAGGCACCCTATTGTGATGACGAGTCATGTTGATAA
AAATATTCCTTTTCATTATTTTAGTGGAGAACATTGAGAACAAACCAAGT
GTTGTGTCGCCAGGGCCTGAGCACAAACCAAAGTCACCCAATATCAAAGA
ATTTAAAGAAAAATTACCAAAGATGACAGGTACGTTGCCCCTCCCAAAAG
ATTAATCAATTAAAGTCGCCTATTGTTTTTAGCTTTGTATTGTTCTTGTA
AAGGTTCGAATGAAAGAAACGGTACAATATACAATAACTATTTAAAAGTT
ATCTTAGTATCTTTTTTTCTTGAATCCCCTGTTGTTTTTCTTTTTTGCTT
CGTGTTTCAAAGTGAAGCTACCTGACCAGATGTGAACATATGCTTCAAAT
AATTTGCCATTGTTTTCTCCCTTCTTCACTTAACCCTTCCTTTGTTTCTT
TTGCCCAATTGGACATCTGAGGAGTAGGTTAATCGATATTTGAATATGTT
TTATCCAGATTATCTCTCCACAAAGTCAAATTTGTTTAAACAAATTTGTT
TCGATCTGTCAATGTTTCATTTTATTATATTTCTATCTCTTATCCTTTTT
TGTTTTGTTTTTCCTTTTGACAGGTCGACCATCAATTCCGTCTCTATCGC
CACACCAAGCTTACTCACCGCCCTTCTATTACAGAAAACCAATATTCTTC
AAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTCATTTAACCAAAGG
TACTAACAATTGTATTTAAATTTATCCGCAGAGAGTTTTTTGTATCTAAA
TTAGATTCAGAAGTGAATATCGTCGCTCCAAGATAATTTTCGACAACTGA
GACCCCTTAAATATACGTGAAATTGACTTAAATTATTTTTCAAGTCAAGG
CTCTCGCTGATTAACCANGTCAAAAAGGCACCCTATTGTGATGACGAGTC
ATGTTGATAAAAATATTCCTTTTCATTATTTTAGTGGAAAATATTGAGAA
CAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAGCCAAAGTCACCCA
ATATCAAAGAATTTAAAGAAAAATTACCAAAAATGACAGGTACGTTGCCC
CTCCCAAAAGATTAATCAATTAAAGTCGCCTATTGTTTTTAGCTTTGTAT
TGTTCTTGTAAAGGTTCGAATGAAAGAAACGGTACAATATACAATAACTA
TTTAAAAGTTATCTTAGTATCTTTTTTTCTTGAATCCCCTGTTGTTTTTC
TTTTTTGCTTCGTGTTTCAAAGTGAAGCTACCTGACCAGATGTGAACATA
TGCTTCAAATAATTTGCCATTGTTTTCTCCCTTCTTCACTTAACCCTTCC
TTTGTTTCTTTTGCCCAATTGGACATCTGAGGAGTAGGTTAATCGATATT
TGAATATGTTTTATCCAGATTATCTCTCCACAAAGTCAAATTTGTTTAAA
CAAATTTGTTTCGATCTGTCAATGTTTCATTTTATTATATTTCTATCTCT
TATCCTTTTTTGTTTTGTTTTTCCTTTTGACAGGTCGACCATCAATTCCG
TCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTATTACAGAAAACC
AATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTCATT
TAACCAAAGGTACTAACAATTGTATTTAAATTTATCCGCAGAGAGTTTTT
TGTATCTAAATTAGATTCAGAAGTGAATATCGTCGCTCCAAGATAATTTT
CGACAACTGAGACCCCTTAAATATACGTGAAATTGACTTAAATTATTTTT
CAAGTCAAGGCTCTCGCTGATTAACCAACTCTTATGATTCGCATAAATCA
ATCAATAACCAATACTATGATCCTAATATTACAGCTCGATTCCACGGCTC
ACCTCGTGAAATGCAACGATTCACGCCTTACCCATCACCACCTCCACCCA
CAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTTGTTAC
ATCGATGAATACTGCACTAAGAAATCTTTCGTATATCCTCCACCGGCCAA
CATGCGCCATGAATACATCTCACACTCAAATCCAGTTTTCCAGTCCAAAA
CAAAAGAACCAGTCGATCTAAATAACAACAAGGCGACAACAAAAGGTCCA
AAATCTCCACATTATTCACCAGTTGGTCGAATCTCACCGCAATCAAATAA
CGACCTATCTTCACCTTCATCGTACGGTCGACAGCGATCACCATTCATGG
ATCGTCGCTCTCCCTCCTACATTGACCACCACGGTAGATCTCCATACGGC
GAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCCACCATCCTTCGA
TTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGCATCGC
CTACACCGGGAGTAACATCACCGAAAGACACTTCTAAAACAGACTCACAT
GCTAATACTCCATCTATCGAAATGCTTGCAAGATTATTCCCACGACATCA
AACAACCACTTTAAAAAACGTCCTAAGCAACTGCAATAATGATCCTGTAC
GTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAGATAATAACAAC
AACAATAGCATCAATCAAAAACTTCCACCTGTCAAAAACACTTACTCAGC
AAAACGAAATGAACCAATTATTGACAATAAACATGGAAGTAATGACGATC
TATCAAATCTAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGAAAATT
AGAAGTCCGAAAGTTGTACACTGGTAACATAAAAAATCCTCTTGTATAAT
AAAATACTGTTCAGCCTGAAATATTATGTATTTTTTTGTCTGTAAATACG
CAACTCAATTGTAAATGATTAAATTATCAAACTTCTAATTTATGAAAAAT
ATAATTTGGCTTCACAAGCTGTATGTAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046192-exon-scaffold_106-1575043694:419557..419913 | TCONS_00046192-exon-scaffold_106-1575043694:419557..419913 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1575043694:415775..415879 | TCONS_00046192-exon-scaffold_106-1575043694:415775..415879 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1575043694:415205..415330 | TCONS_00046192-exon-scaffold_106-1575043694:415205..415330 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1575043694:413931..414979 | TCONS_00046192-exon-scaffold_106-1575043694:413931..414979 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1510915933:419557..419913 | TCONS_00046192-exon-scaffold_106-1510915933:419557..419913 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1510915933:415775..415879 | TCONS_00046192-exon-scaffold_106-1510915933:415775..415879 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1510915933:415205..415330 | TCONS_00046192-exon-scaffold_106-1510915933:415205..415330 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1510915933:413931..414979 | TCONS_00046192-exon-scaffold_106-1510915933:413931..414979 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1491911889:419557..419913 | TCONS_00046192-exon-scaffold_106-1491911889:419557..419913 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1491911889:415775..415879 | TCONS_00046192-exon-scaffold_106-1491911889:415775..415879 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1491911889:415205..415330 | TCONS_00046192-exon-scaffold_106-1491911889:415205..415330 | Clytia hemisphaerica | exon |
| TCONS_00046192-exon-scaffold_106-1491911889:413931..414979 | TCONS_00046192-exon-scaffold_106-1491911889:413931..414979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:413931..419913 - |
Blast
BLAST of TCONS_00046192 vs. Swiss-Prot (Human)
Match: DMTA2 (Doublesex- and mab-3-related transcription factor A2 OS=Homo sapiens GN=DMRTA2 PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 2.350e-24 Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 3
Query: 81 RSPKCARCRNHGFDSSLKGHKGYCRWRDCMCPKCVLIVERQRVLAAQVALRRQQMQESKQ 260
R+PKCARCRNHG S+LKGHK YCRW+DC+C KC LI ERQRV+AAQVALRRQQ QE +
Sbjct: 66 RTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENE 125
The following BLAST results are available for this feature:
|
