TCONS_00046190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046190
Unique NameTCONS_00046190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046190 ID=TCONS_00046190|Name=TCONS_00046190|organism=Clytia hemisphaerica|type=transcript|length=1328bp
TATCACCTAATGAAGCATTACAACgcacaaaagaaaatgaaattaaagTG
GAGAACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAA
ACCAAAGTCACCCAATATCaaagaatttaaagaaaaattaccaAAGATGA
CAGGTCGACCATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCG
CCCTTCTATTACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATT
CCAGATGTGGGCACCTCATTTAACCAAAGCTCGATTCCACGGCTCACCTC
GTGAAATGCAACGATTCACGCCTTACCCATCACCACCTCCACCCACAGTG
CCCTCTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTTGTTACATCGA
TGAATACTGCACTAAGAAATCTTTCGTATATCCTCCACCGGCCAACATGC
GCCATGAATACATCTCACACTCAAATCCAGTTTTCCAgtccaaaacaaaa
gaaccagTCGATCTAAATAACAACAAGGCGACAACAAAAGGtccaaaatc
tccacattattCACCAGTTGGTCGAATCTCACCGCAATCAAATAACGACC
TATCTTCACCTTCATCGTACGGTCGACAGCGATCACCATTCATGGATCGT
CGCTCTCCCTCCTACATTGACCACCACGGTAGATCTCCATACGGCGAAAG
ACGATCTCCTATTTATCTAGAGAGACGTTCTCCACCATCCTTCGATTCAA
AACACTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGCATCGCCTACA
CCGGGAGTAACATCACCGAAAGACACTTCTAAAACAGACTCACATGCTAA
TACTCCATCTATCGAAATGCTTGCAAGATTATTCCCACGACATCAAACAA
CCACTTTAAAAAACGTCCTAAGCAACTGCAATAATGATCCTGTACGTGCA
ATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAGataataacaacaacaa
taGCATCAATCAAAAACTTCCACCTGTCAAAAACACTTACTCAGCAAAAC
GAAATGAACCAATTATTGACAATAAACATGGAAGTAATGACGATCTATCA
AATCTAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGAAAATTAGAAG
TCCGAAAGTTGTACACTGGTAACATAAAAAATCCTCTTGTATAATAAAAT
ACTGTTCAGCCTGAAATATTATGTATTTTTTTGTCTGTAAATACGCAACT
CAATTGTAAATGATTAAATTATCAAACTtctaatttatgaaaaatataat
ttggcTTCACAAGCTGTATGTAAATAAT
Run BLAST on NCBI

transcript from alignment at scaffold_106:413931..417933-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046190 ID=TCONS_00046190|Name=TCONS_00046190|organism=Clytia hemisphaerica|type=transcript|length=4003bp|location=Sequence derived from alignment at scaffold_106:413931..417933- (Clytia hemisphaerica)
TATCACCTAATGAAGCATTACAACGCACAAAAGAAAATGAAATTAAAGGT
AATGAAATTTTTAATTTTTCAAAGTTTAAAATTTAATACAGTCAAGCAAT
ATATCTCGGTGGTATGGTGATACCACTCAAGCTTCTAAAAACAAAAACTT
TAACAATAATTAATTTCAAATTTAATTTTAATTTTTCATTTCGATAGTTG
TGAAAATACCTTGAAAGTGTTACATTTTACAAAACGTGTGCTGAAGCTCT
GCCGTTACGCATCTAATGCAATATGTTGGGAGGCATTTTGAAACTGGGGC
TACTGGTGATCATTAAGGGATATCGAGCAAACATACATACACTGTGTAAA
CATGATTTCTTATCAAATTTATCATCGGGTTAAATCAATTTTTGTATGTT
CTGGCTGCTGAGCTTTTTAAAGGCTCTTCATATATATGTTAATTTTTTTA
AATTCTGACTTTGATCAAAGAATATTTCGGCGCGGTCTTTTTCCTACGAT
TGGGCGAACTCGATACAAATTTCCCTATCACGCAAACTACCGCAAACAAA
TAGAACATCTGGCTCATCACTATTAGAATATTGAGAACACGTAGCAAAAA
TAAAATATACGAGAAATGTATATAAAAATATTTTTGTAACGAAAGACAAA
AGCAAGGATAGGCCCCCGTGCAGTGAAAAAACGTAACAGCCGTTAGACGG
GTTTTGTTGACAAAATAGTTTTCAAAAAGATGGAAGATGGTAAATTATAT
CGAAAATTTTGTATTTTGTTTCAAAAAAAAAAGAAGAAGATATTTTTACA
AAATTTCCTTCAAGATGTTCACTGAGTAACTCAAAACAATGAAAAAATAA
TAAAAATGAGGGGAAATAGAAACATCTAACAAAACAATTACTTTTTTATG
ACTTCATTTCAATGTAGGCACAGCATGATTTATCAAACTTTTTCCAACGT
TTATTTAATTTCTTTTTCTGGCTCCCCCCTGACAGCGTACTAGAAAATAA
ATAGGGTGCAATATGTGCCATATTTGATGAAAATAACTCGCAAACGTTTT
GTTTCAATATTGTAACAACAGTTTTTTTGTCAAAAAGGCACCCTATTGTG
ATGACGAGTCATGTTGATAAAAATATTCCTTTTCATTATTTTAGTGGAGA
ACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAACCA
AAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAAAGATGACAGG
TACGTTGCCCCTCCCAAAAGATTAATCAATTAAAGTCGCCTATTGTTTTT
AGCTTTGTATTGTTCTTGTAAAGGTTCGAATGAAAGAAACGGTACAATAT
ACAATAACTATTTAAAAGTTATCTTAGTATCTTTTTTTCTTGAATCCCCT
GTTGTTTTTCTTTTTTGCTTCGTGTTTCAAAGTGAAGCTACCTGACCAGA
TGTGAACATATGCTTCAAATAATTTGCCATTGTTTTCTCCCTTCTTCACT
TAACCCTTCCTTTGTTTCTTTTGCCCAATTGGACATCTGAGGAGTAGGTT
AATCGATATTTGAATATGTTTTATCCAGATTATCTCTCCACAAAGTCAAA
TTTGTTTAAACAAATTTGTTTCGATCTGTCAATGTTTCATTTTATTATAT
TTCTATCTCTTATCCTTTTTTGTTTTGTTTTTCCTTTTGACAGGTCGACC
ATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTATT
ACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGG
GCACCTCATTTAACCAAAGGTACTAACAATTGTATTTAAATTTATCCGCA
GAGAGTTTTTTGTATCTAAATTAGATTCAGAAGTGAATATCGTCGCTCCA
AGATAATTTTCGACAACTGAGACCCCTTAAATATACGTGAAATTGACTTA
AATTATTTTTCAAGTCAAGGCTCTCGCTGATTAACCANGTCAAAAAGGCA
CCCTATTGTGATGACGAGTCATGTTGATAAAAATATTCCTTTTCATTATT
TTAGTGGAAAATATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGA
GCACAAGCCAAAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAA
AAATGACAGGTACGTTGCCCCTCCCAAAAGATTAATCAATTAAAGTCGCC
TATTGTTTTTAGCTTTGTATTGTTCTTGTAAAGGTTCGAATGAAAGAAAC
GGTACAATATACAATAACTATTTAAAAGTTATCTTAGTATCTTTTTTTCT
TGAATCCCCTGTTGTTTTTCTTTTTTGCTTCGTGTTTCAAAGTGAAGCTA
CCTGACCAGATGTGAACATATGCTTCAAATAATTTGCCATTGTTTTCTCC
CTTCTTCACTTAACCCTTCCTTTGTTTCTTTTGCCCAATTGGACATCTGA
GGAGTAGGTTAATCGATATTTGAATATGTTTTATCCAGATTATCTCTCCA
CAAAGTCAAATTTGTTTAAACAAATTTGTTTCGATCTGTCAATGTTTCAT
TTTATTATATTTCTATCTCTTATCCTTTTTTGTTTTGTTTTTCCTTTTGA
CAGGTCGACCATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCG
CCCTTCTATTACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATT
CCAGATGTGGGCACCTCATTTAACCAAAGGTACTAACAATTGTATTTAAA
TTTATCCGCAGAGAGTTTTTTGTATCTAAATTAGATTCAGAAGTGAATAT
CGTCGCTCCAAGATAATTTTCGACAACTGAGACCCCTTAAATATACGTGA
AATTGACTTAAATTATTTTTCAAGTCAAGGCTCTCGCTGATTAACCAACT
CTTATGATTCGCATAAATCAATCAATAACCAATACTATGATCCTAATATT
ACAGCTCGATTCCACGGCTCACCTCGTGAAATGCAACGATTCACGCCTTA
CCCATCACCACCTCCACCCACAGTGCCCTCTTCCAGCGAATGTCATAGAG
GCGTTGACCGCCCTTGTTACATCGATGAATACTGCACTAAGAAATCTTTC
GTATATCCTCCACCGGCCAACATGCGCCATGAATACATCTCACACTCAAA
TCCAGTTTTCCAGTCCAAAACAAAAGAACCAGTCGATCTAAATAACAACA
AGGCGACAACAAAAGGTCCAAAATCTCCACATTATTCACCAGTTGGTCGA
ATCTCACCGCAATCAAATAACGACCTATCTTCACCTTCATCGTACGGTCG
ACAGCGATCACCATTCATGGATCGTCGCTCTCCCTCCTACATTGACCACC
ACGGTAGATCTCCATACGGCGAAAGACGATCTCCTATTTATCTAGAGAGA
CGTTCTCCACCATCCTTCGATTCAAAACACTCTCCAATTCCTGACAGATT
TACCAAAGAAGGCGCATCGCCTACACCGGGAGTAACATCACCGAAAGACA
CTTCTAAAACAGACTCACATGCTAATACTCCATCTATCGAAATGCTTGCA
AGATTATTCCCACGACATCAAACAACCACTTTAAAAAACGTCCTAAGCAA
CTGCAATAATGATCCTGTACGTGCAATTGAAGAAATTTTGGACAGAGTGC
CAGCTGAAGATAATAACAACAACAATAGCATCAATCAAAAACTTCCACCT
GTCAAAAACACTTACTCAGCAAAACGAAATGAACCAATTATTGACAATAA
ACATGGAAGTAATGACGATCTATCAAATCTAGCAAAAGCATTTGATATCC
CAGTATCTGAGGAGAAAATTAGAAGTCCGAAAGTTGTACACTGGTAACAT
AAAAAATCCTCTTGTATAATAAAATACTGTTCAGCCTGAAATATTATGTA
TTTTTTTGTCTGTAAATACGCAACTCAATTGTAAATGATTAAATTATCAA
ACTTCTAATTTATGAAAAATATAATTTGGCTTCACAAGCTGTATGTAAAT
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029498XLOC_029498Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046190-exon-scaffold_106-1575043694:417886..417933TCONS_00046190-exon-scaffold_106-1575043694:417886..417933Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1575043694:416685..416789TCONS_00046190-exon-scaffold_106-1575043694:416685..416789Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1575043694:416115..416240TCONS_00046190-exon-scaffold_106-1575043694:416115..416240Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1575043694:413931..414979TCONS_00046190-exon-scaffold_106-1575043694:413931..414979Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1510915933:417886..417933TCONS_00046190-exon-scaffold_106-1510915933:417886..417933Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1510915933:416685..416789TCONS_00046190-exon-scaffold_106-1510915933:416685..416789Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1510915933:416115..416240TCONS_00046190-exon-scaffold_106-1510915933:416115..416240Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1510915933:413931..414979TCONS_00046190-exon-scaffold_106-1510915933:413931..414979Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1491911889:417886..417933TCONS_00046190-exon-scaffold_106-1491911889:417886..417933Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1491911889:416685..416789TCONS_00046190-exon-scaffold_106-1491911889:416685..416789Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1491911889:416115..416240TCONS_00046190-exon-scaffold_106-1491911889:416115..416240Clytia hemisphaericaexon
TCONS_00046190-exon-scaffold_106-1491911889:413931..414979TCONS_00046190-exon-scaffold_106-1491911889:413931..414979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:413931..417933 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	5.14622e-07	0	0	0	0	0	0	0	0	0	0	9.33898e-06	0	0	0	0	0	0	0	4.44655e-08	0	1.05807e-05	0	0	0	0.000271168	0.020046	2.76922e-06
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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