TCONS_00046173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046173
Unique NameTCONS_00046173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046173 ID=TCONS_00046173|Name=TCONS_00046173|organism=Clytia hemisphaerica|type=transcript|length=777bp
gggatttcaattcttttgctttccagtcagaaaattcagtggggatggga
aaaatagcataatattttgcagtgagaattggtttatttgattattttca
gtggggacaaaaagtGGAGGATAATTTTACACCGGGAACGATGTCTTgga
caaattttccagtgggaagaagtcccagtgggtctgtgaaaagggggtaT
TTTAGACAGCGAGGCTCACTTTGGTAAAGGCTAACGAAGAGCATGTTTGA
CAGAAGGAAATCTGATATTCAAATTCCAcactcaaagaaaatgtttcttt
atttttcagggtGTGTATTTGTTGGTTGGACACGTCATCATGGATGTCAA
TGTTCGACAAGATATCGACACGCGATTTGATTGGCTCAAACAAAAGACTG
TTCGAATGAGGAAATTTTCACAAGAATCGACGCGAACGAGAACAAGCACC
ATGTGAATAAATTGCGAGACAAACTTAATCACTTTCTTGAAGATTTGAGG
ATTTAGCTAAGCTACGCCAAAGTCATTTTATTTGAATTCGATATAAACAT
GTGGTAGAAACTTAGTAGAAACAAGTATGAACTTCGGCCTGGATTAAAAA
CAAACCTATTTACTTTACTTAGATTTCTGTTGGGCCTTGGGCCTACATAA
TGAGATTTGTCTTATCGAAATTTTTCATCACTTAGGACTTGTTCGTTAAA
CTTGAAATGAAAACTTTTGTTTAGTAAAATGTTTGGGCATTTATCTTTTT
CAAAGGGGCGTTTGAAATAAGGGGCGT
Run BLAST on NCBI

transcript from alignment at scaffold_106:331659..332435-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046173 ID=TCONS_00046173|Name=TCONS_00046173|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_106:331659..332435- (Clytia hemisphaerica)
GGGATTTCAATTCTTTTGCTTTCCAGTCAGAAAATTCAGTGGGGATGGGA
AAAATAGCATAATATTTTGCAGTGAGAATTGGTTTATTTGATTATTTTCA
GTGGGGACAAAAAGTGGAGGATAATTTTACACCGGGAACGATGTCTTGGA
CAAATTTTCCAGTGGGAAGAAGTCCCAGTGGGTCTGTGAAAAGGGGGTAT
TTTAGACAGCGAGGCTCACTTTGGTAAAGGCTAACGAAGAGCATGTTTGA
CAGAAGGAAATCTGATATTCAAATTCCACACTCAAAGAAAATGTTTCTTT
ATTTTTCAGGGTGTGTATTTGTTGGTTGGACACGTCATCATGGATGTCAA
TGTTCGACAAGATATCGACACGCGATTTGATTGGCTCAAACAAAAGACTG
TTCGAATGAGGAAATTTTCACAAGAATCGACGCGAACGAGAACAAGCACC
ATGTGAATAAATTGCGAGACAAACTTAATCACTTTCTTGAAGATTTGAGG
ATTTAGCTAAGCTACGCCAAAGTCATTTTATTTGAATTCGATATAAACAT
GTGGTAGAAACTTAGTAGAAACAAGTATGAACTTCGGCCTGGATTAAAAA
CAAACCTATTTACTTTACTTAGATTTCTGTTGGGCCTTGGGCCTACATAA
TGAGATTTGTCTTATCGAAATTTTTCATCACTTAGGACTTGTTCGTTAAA
CTTGAAATGAAAACTTTTGTTTAGTAAAATGTTTGGGCATTTATCTTTTT
CAAAGGGGCGTTTGAAATAAGGGGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029494XLOC_029494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046173-exon-scaffold_106-1575043694:331659..332435TCONS_00046173-exon-scaffold_106-1575043694:331659..332435Clytia hemisphaericaexon
TCONS_00046173-exon-scaffold_106-1510915933:331659..332435TCONS_00046173-exon-scaffold_106-1510915933:331659..332435Clytia hemisphaericaexon
TCONS_00046173-exon-scaffold_106-1491911889:331659..332435TCONS_00046173-exon-scaffold_106-1491911889:331659..332435Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:331659..332435 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0747902	0.22083	0.295895	4.14185	3.45629	6.26289	12.3525	10.1943	5.97702	6.58406	9.05885	8.57498	8.88081	0.16255	0.154605	0	0.0868866	0	0	0	0	0	0	5.08015	17.7553	0.171687	0.096939	0	0.0707234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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