TCONS_00046169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046169
Unique NameTCONS_00046169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3145

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046169 ID=TCONS_00046169|Name=TCONS_00046169|organism=Clytia hemisphaerica|type=transcript|length=3145bp
AGTATCACCAAGAAGTACTACATTCAAATGCAGTAATTGTTCAAAAGATG
ATGCTCAAAATAGATGTTCAAGATGTACGGCTGTCAGATATTGCTCCAAA
GAATGTCAAAAAGCTCATTGGGACTGGCATAAAGTCGCTTGTAAACATAT
CAGAAAGAAAATAGTGTCACTGTGTTTGGAACATTTGATAGATATTCTCA
TGTTTAACCGAGGTGACCATTCAGGCTGTTGGGCACATATTCCTGGTATG
CTGTTCTTGCTGGATGAGCCACAAGAAGCTTATGATTACTTAAAATGGTG
GCAAGTGTTGCATAACGATGGTTATTATGACCACACTAAATTCGAGCTTC
CAAGCggtgacaaattaaaaaatgagAATATCTTCGAGGATCTGTCGGAA
TTGAATCTCAGTAAAAAACATGTTCCTTGGTTGGTTTCAATGTATATGGT
AAAATACAAGATGTTGAGGAAAATCGAGAAAGACAAGATTTCCTATGAGT
CATTTCTTCTTGGAACACACCCTAGAGTTGGTGAAGATTCACCCATCCAG
CAAATCGGTGGAGTTTCGGTCATCTTACACAACATCAAGAAATGTTTCTC
TCCAATTGATAAATATGAAACTATCAGGAATCAAACGattcaaattttaa
agtttaTCGATTCCAAAAACAAATACATCATTCCTGGGTTTCTGAATTAT
AAAGTGCTCCTTGAACAGCCAAACCCACTGTATGTTGGGGAAGGAGGGAG
CCTTCAAGACCAAGCTTATGGTGCTGTTTGGTTTGATATTAAACATTGGG
AACCCGTACCTGATATCTTCATCCTCACCAAAGAGCTTTACATTCAAATA
CATGGAAAAGTGAAAGCTGAACGCGACATAGCTGAACTACCGAGAGAAAA
AGTATCACTTGCCAAAGTGCTAGGCAAAGCACACCTAGCTTGAAAGTAGT
TTCCATATCATTCAAAGACACAACATTACTGAATACGCTTGATTGCTTTT
GTAGCGGCAATTTAAGAGGGGTATATGTTTGACGTGAACCACTCCCAATA
AAGTGCGGGATACCAAAAATATTGCCACTTTAAACTTTTGACCTTAAAAC
CTCGAGGAGTGCTTACTATTCAAGCCAAACGAAAAGACGATGTATTTCTC
GGTGACTTTACAATGTATTTGGTGGACATGGTTTAATTCGTTACGATTAG
CATTATCTTCTTACTATTTTTATATTGTATTTTTATGTCATTCACTTCGT
TCATTTAtacattttcctttaaaaacgAAATCTTTCTGCTTTATTTACAC
CGAAGTCGAATTCGAGgaagtaaatgaaaaaaatcgaaCGAATCGACTTT
ACAGTTTAGTGTTATGCAAATTTACCGTGTTTGTTTCGTTTTAGAGTTAG
TAAAAATAATAAGATGGAGCCAAGAATCGTCAGTGAAACAACAGTATCTC
CAAGAAGCACTTCATTTGAATGCAGTAACTGTTCGAAAGATGATGCCGAA
CAAAGATGTTCAAGATGTACGGCCGTCAAATATTGCTCCAAAGAATGTCA
AAAAGATCATTGGGTGAAACATAAAGCTTACTGCAATGAGATCAAGAAGT
TATTAAAGAAAGTGGCTCTTGAAAGAGAACCATTGAGACGATATGAGGAT
TGGTTTGGAAACGAACCTTATGATTTGTTTCCAGATGATGTCGGTCATTT
CTGGAGTTTAGTCGAGCCACGAAACTATTGTCGAGCACGACATGCTTTAT
CCATGCGTTTGCACGAGTGTGggataaaaaataattcaaaattggCTTTA
GAACTTTGCGTGGAACATTTGTTAGACTTGGTTTGGTTGAGTCGAGGCGA
TAACCTTGGGGTACGTTCGCTTATCCCAGGAATTTTATGCGTTTTGGGTG
AAGTGCAAGAAGCTTACGATTTCTTGAAATGGTGGAAAGTTTGTGATCCT
GATGGGCGCTATGATTGGGGGAACCTGGACCTCCCTTACTGTAATTTAAA
AGATGAagatatttttgaagatttgtcGCTTTTATGTCTTCATAAATACA
CAGATGCTTTCTCCTTGGTTTCGCTATTCTTGATTAAATACAAAGTTATG
AATCAGCTAGAGAAGGAGAAATTTTCCTATGAGACTTTTCTCCTTGGTAC
ACATTCAAGACTTGGAGAAGAATCTCCAGTCCGCAAGATCAGTGGAGTAT
CTGTTGTCTTACAGAATATCAAACACCTTATAGCACCTGGTAGttacaaa
aaaatcaacattttgaaACAACATTTGGAAGAATTAGCGAAACGAATTGA
TGAAGGAAATAAATTTGCGATTCCTGGACTGTTGAATTCAGCAGATCTTC
TAGCTCACCCTCAGCCTCAATACACTTCACCTGGCACTCAGAATGAAGCT
CATTCGATCACAATTTGTGAGATAGATCATTGGCTAGCTACCCCTGGCAT
TCATTCGTATTTGAAAGATTTATACATCGGTCTACATGGTAAAAAGAAAG
CTGAAAAAAACATTGCAGAAATCCCTAATGAGAAAGCCATGCTAACCATA
GATGGCAGCGATGTTTATCATATGGACCAAGCAAAAATCATGTAACTTGT
TCGTTCTTAACAGACCATTGTGTATAGTtcttttaattttggttttttgT
GTTGTCTAAAGTGAATAGTTGGAGCCTCTGAACCTTTTTGTGACAGTTAC
TCACAAACCACAACGTTCAACGTCGTTGAACATTCGTCTGGCGATGTAAC
TACATAGACGTTAAATGATCATTAAATGGACTTTAAATGAAATGGACTTT
ATTCGGACGTTTTGTCCCAAGGGTGAATGTtatatacggaagcacccaaa
aaagatCTGGTCTTTTTCACTAGTTTTAAATTCAAACAATAAAGTTACTG
GCAAATGCCTGGACTATTTTGAGTGCCTTgtatataaaacattacgtcat
caaTATCCAGTTTTggtgtgtttaaaatttcgaacCAAACTAAGAGGTTA
GTTAGTGTTATTCAAGATAACATTGTGTAGCACTAATTTCTTGTCGTCGT
GTTCAAATATCATGTTTCATGTTTGTCTTTTGTTCTGTTTTTtcgctttt
tcaatttttgaagcattttttcgtaaaaaaaagtcaaagaCTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_106:297010..300429-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046169 ID=TCONS_00046169|Name=TCONS_00046169|organism=Clytia hemisphaerica|type=transcript|length=3420bp|location=Sequence derived from alignment at scaffold_106:297010..300429- (Clytia hemisphaerica)
AGTATCACCAAGAAGTACTACATTCAAATGCAGTAATTGTTCAAAAGATG
ATGCTCAAAATAGATGTTCAAGATGTACGGCTGTCAGATATTGCTCCAAA
GAATGTCAAAAAGCTCATTGGGACTGGCATAAAGTCGCTTGTAAACATAT
CAGAAAGAAAATAGTGTCAGTAGAGAAAGAGATGGCCAAACTCGAAGGTA
GAGGTAAATCATGGAGAATAACTAAGATGCAACCTTATCTGAAGGAGCGT
TTTGATTTAGCTATTGGCTTTCAATTTTGTGGTGAGAAAAATGATTCACG
TTTAGCTTTAGAGCTATGTTTGGAACANCGACTGGTAAATCATGGAGAAT
AACTAAGATGCAACCTTATCTGAAGGAGCGTTTTGATTTAGCTATTGGCT
TTCAATTTTGTGGTGAGAAAAATGATTCACGTTTAGCTTTAGAGCTGTGT
TTGGAACATTTGATAGATATTCTCATGTTTAACCGAGGTGACCATTCAGG
CTGTTGGGCACATATTCCTGGTATGCTGTTCTTGCTGGATGAGCCACAAG
AAGCTTATGATTACTTAAAATGGTGGCAAGTGTTGCATAACGATGGTTAT
TATGACCACACTAAATTCGAGCTTCCAAGCGGTGACAAATTAAAAAATGA
GAATATCTTCGAGGATCTGTCGGAATTGAATCTCAGTAAAAAACATGTTC
CTTGGTTGGTTTCAATGTATATGGTAAAATACAAGATGTTGAGGAAAATC
GAGAAAGACAAGATTTCCTATGAGTCATTTCTTCTTGGAACACACCCTAG
AGTTGGTGAAGATTCACCCATCCAGCAAATCGGTGGAGTTTCGGTCATCT
TACACAACATCAAGAAATGTTTCTCTCCAATTGATAAATATGAAACTATC
AGGAATCAAACGATTCAAATTTTAAAGTTTATCGATTCCAAAAACAAATA
CATCATTCCTGGGTTTCTGAATTATAAAGTGCTCCTTGAACAGCCAAACC
CACTGTATGTTGGGGAAGGAGGGAGCCTTCAAGACCAAGCTTATGGTGCT
GTTTGGTTTGATATTAAACATTGGGAACCCGTACCTGATATCTTCATCCT
CACCAAAGAGCTTTACATTCAAATACATGGAAAAGTGAAAGCTGAACGCG
ACATAGCTGAACTACCGAGAGAAAAAGTATCACTTGCCAAAGTGCTAGGC
AAAGCACACCTAGCTTGAAAGTAGTTTCCATATCATTCAAAGACACAACA
TTACTGAATACGCTTGATTGCTTTTGTAGCGGCAATTTAAGAGGGGTATA
TGTTTGACGTGAACCACTCCCAATAAAGTGCGGGATACCAAAAATATTGC
CACTTTAAACTTTTGACCTTAAAACCTCGAGGAGTGCTTACTATTCAAGC
CAAACGAAAAGACGATGTATTTCTCGGTGACTTTACAATGTATTTGGTGG
ACATGGTTTAATTCGTTACGATTAGCATTATCTTCTTACTATTTTTATAT
TGTATTTTTATGTCATTCACTTCGTTCATTTATACATTTTCCTTTAAAAA
CGAAATCTTTCTGCTTTATTTACACCGAAGTCGAATTCGAGGAAGTAAAT
GAAAAAAATCGAACGAATCGACTTTACAGTTTAGTGTTATGCAAATTTAC
CGTGTTTGTTTCGTTTTAGAGTTAGTAAAAATAATAAGATGGAGCCAAGA
ATCGTCAGTGAAACAACAGTATCTCCAAGAAGCACTTCATTTGAATGCAG
TAACTGTTCGAAAGATGATGCCGAACAAAGATGTTCAAGATGTACGGCCG
TCAAATATTGCTCCAAAGAATGTCAAAAAGATCATTGGGTGAAACATAAA
GCTTACTGCAATGAGATCAAGAAGTTATTAAAGAAAGTGGCTCTTGAAAG
AGAACCATTGAGACGATATGAGGATTGGTTTGGAAACGAACCTTATGATT
TGTTTCCAGATGATGTCGGTCATTTCTGGAGTTTAGTCGAGCCACGAAAC
TATTGTCGAGCACGACATGCTTTATCCATGCGTTTGCACGAGTGTGGGAT
AAAAAATAATTCAAAATTGGCTTTAGAACTTTGCGTGGAACATTTGTTAG
ACTTGGTTTGGTTGAGTCGAGGCGATAACCTTGGGGTACGTTCGCTTATC
CCAGGAATTTTATGCGTTTTGGGTGAAGTGCAAGAAGCTTACGATTTCTT
GAAATGGTGGAAAGTTTGTGATCCTGATGGGCGCTATGATTGGGGGAACC
TGGACCTCCCTTACTGTAATTTAAAAGATGAAGATATTTTTGAAGATTTG
TCGCTTTTATGTCTTCATAAATACACAGATGCTTTCTCCTTGGTTTCGCT
ATTCTTGATTAAATACAAAGTTATGAATCAGCTAGAGAAGGAGAAATTTT
CCTATGAGACTTTTCTCCTTGGTACACATTCAAGACTTGGAGAAGAATCT
CCAGTCCGCAAGATCAGTGGAGTATCTGTTGTCTTACAGAATATCAAACA
CCTTATAGCACCTGGTAGTTACAAAAAAATCAACATTTTGAAACAACATT
TGGAAGAATTAGCGAAACGAATTGATGAAGGAAATAAATTTGCGATTCCT
GGACTGTTGAATTCAGCAGATCTTCTAGCTCACCCTCAGCCTCAATACAC
TTCACCTGGCACTCAGAATGAAGCTCATTCGATCACAATTTGTGAGATAG
ATCATTGGCTAGCTACCCCTGGCATTCATTCGTATTTGAAAGATTTATAC
ATCGGTCTACATGGTAAAAAGAAAGCTGAAAAAAACATTGCAGAAATCCC
TAATGAGAAAGCCATGCTAACCATAGATGGCAGCGATGTTTATCATATGG
ACCAAGCAAAAATCATGTAACTTGTTCGTTCTTAACAGACCATTGTGTAT
AGTTCTTTTAATTTTGGTTTTTTGTGTTGTCTAAAGTGAATAGTTGGAGC
CTCTGAACCTTTTTGTGACAGTTACTCACAAACCACAACGTTCAACGTCG
TTGAACATTCGTCTGGCGATGTAACTACATAGACGTTAAATGATCATTAA
ATGGACTTTAAATGAAATGGACTTTATTCGGACGTTTTGTCCCAAGGGTG
AATGTTATATACGGAAGCACCCAAAAAAGATCTGGTCTTTTTCACTAGTT
TTAAATTCAAACAATAAAGTTACTGGCAAATGCCTGGACTATTTTGAGTG
CCTTGTATATAAAACATTACGTCATCAATATCCAGTTTTGGTGTGTTTAA
AATTTCGAACCAAACTAAGAGGTTAGTTAGTGTTATTCAAGATAACATTG
TGTAGCACTAATTTCTTGTCGTCGTGTTCAAATATCATGTTTCATGTTTG
TCTTTTGTTCTGTTTTTTCGCTTTTTCAATTTTTGAAGCATTTTTTCGTA
AAAAAAAGTCAAAGACTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029492XLOC_029492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046169-exon-scaffold_106-1575043694:300261..300429TCONS_00046169-exon-scaffold_106-1575043694:300261..300429Clytia hemisphaericaexon
TCONS_00046169-exon-scaffold_106-1575043694:297010..299985TCONS_00046169-exon-scaffold_106-1575043694:297010..299985Clytia hemisphaericaexon
TCONS_00046169-exon-scaffold_106-1510915933:300261..300429TCONS_00046169-exon-scaffold_106-1510915933:300261..300429Clytia hemisphaericaexon
TCONS_00046169-exon-scaffold_106-1510915933:297010..299985TCONS_00046169-exon-scaffold_106-1510915933:297010..299985Clytia hemisphaericaexon
TCONS_00046169-exon-scaffold_106-1491911889:300261..300429TCONS_00046169-exon-scaffold_106-1491911889:300261..300429Clytia hemisphaericaexon
TCONS_00046169-exon-scaffold_106-1491911889:297010..299985TCONS_00046169-exon-scaffold_106-1491911889:297010..299985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:297010..300429 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398496	0.658767	0.30581	0.187717	0.933581	0	0	0.262545	0.44091	0.108205	0.149433	0.0776428	0.203999	0	0.308329	0.195138	0.223004	0.36896	0.0946552	0	0.101337	0.17654	0.344219	0.461435	0.249994	0.186643	0	0	0.0742449	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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