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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046165 ID=TCONS_00046165|Name=TCONS_00046165|organism=Clytia hemisphaerica|type=transcript|length=1003bp
GGGATGAGGAAAAAAGTGCCTTACTTTTTACTTCCTATCACATTTGATCT
TGGTGCTGGTACACTTTCTGTTAATTGCGTCATCTGAGTTTTATTTTATG
CGATTTCACTTGAACTTAGTTATCAATAGCTGATGCAAAAACTGATGTAA
AGAAACTACGACTTGTGTCTCGATTGACCAAAATAAGATACTCTCAACTA
CAAATTTATACATAAAACTCGTTAACAATGATTTTGATGCGACAGTGCTT
CTTGTTGATATTCTCCATCCATTCATTCTCATGGACATCGCCATTAACTC
ATTTGAAGAAAGGTTTACAAGCTGGCGACGAAAATGCTTTGAACACGGAT
GATTTGAGTCTTCAGACACAATCAAACCAAGGGAAAATTTCAGACGTGAT
GAGCCCCAGACCGACATTAACAACGAGAACAACGATATCAGCATACAAGA
CAACTTTAAAAACAACAACGACGACCACAAAGACAAAATACCAAAGACgt
tcaaaatataataaacaaaaacatcaacGTTTCGTCATCATCTCTAACCG
AAAAGCGCCACCATGTTGCGTGGCCGGAACGAAGGCAGGATCCTGGGGAT
ATTTATGCATGGCTCACGAACGTTTTGTCACCGAACGCTTCTTCTTACCG
CATCCTTTAAAAGTGAAATTTACACGGCGCCGATCGTACGTCCAATTAGC
CTTAGCTAAGCTAATACAACAATGTTCTAGACACCCGGTCACGGCAAAAC
AGTATGAGAAATGTTGCGATAACGCACAACATAGACTTTATCAAAGAATG
GGTTTAGACTCTTAGTTTGTGACGTTTTTTTtcgattatttttatttatt
tataatttgTAGTTGTAAATTTGTATATAGCAAAAAGTAGGGTCTACCCA
TTCGGTATAGAAATAAAGTTCTCCGTTCTCCTAATAAATATACGCATAAA
ATTCTATGATTTTGAGTTTGATTGAATTATCTACATAAATATGAGCAAAC
cag Run BLAST on NCBI protein sequence of TCONS_00046165-protein >TCONS_00046165-protein ID=TCONS_00046165-protein|Name=TCONS_00046165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MILMRQCFLLIFSIHSFSWTSPLTHLKKGLQAGDENALNTDDLSLQTQSN
QGKISDVMSPRPTLTTRTTISAYKTTLKTTTTTTKTKYQRRSKYNKQKHQ
RFVIISNRKAPPCCVAGTKAGSWGYLCMAHERFVTERFFLPHPLKVKFTR
RRSYVQLALAKLIQQCSRHPVTAKQYEKCCDNAQHRLYQRMGLDS Run BLAST on NCBI transcript from alignment at scaffold_106:252142..253439- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046165 ID=TCONS_00046165|Name=TCONS_00046165|organism=Clytia hemisphaerica|type=transcript|length=1298bp|location=Sequence derived from alignment at scaffold_106:252142..253439- (Clytia hemisphaerica)
GGGATGAGGAAAAAAGTGCCTTACTTTTTACTTCCTATCACATTTGATCT
TGGTGCTGGTACACTTTCTGTTAATTGCGTCATCTGAGTTTTATTTTATG
CGATTTCACTTGAACTTAGTTATCAATAGCTGATGCAAAAACTGATGTAA
AGAAACTACGACTTGTGTCTCGATTGACCAAAATAAGATACTCTCAACTA
CAAATTTATACATAAAACTCGTTAACAATGATTTTGATGCGACAGTGCTT
CTTGTTGATATTCTCCATCCATTCATTCTCATGGACATCGCCATTAACTC
ATTTGAAGAAAGGTTTACAAGCTGGCGACGAAAATGCTTTGAACACGGAT
GATTTGAGTCTTCAGACACAATCAAACCAAGGTATGCACTATTGTTTACT
GTTTTATTATCATTTACTACAATATTTTTGAATCCGCCATTCTCAAACGT
TTAACAAGATTGACTTTAGGGNTCATTTACTACAATATTTTTGAATCCGC
CATTCTCAAACGTTTAACAAAATTGACTTTACTATACTAGGTTATTCATA
ATGTCAAGATTTTTTCTTTAACAATTATTTTCAAAAATCTTTCATACAAA
TATTCTTTTGATTCCTTGTTTCTGGGATCCTTTCAGACAGTGAACATGAA
TAGAATTATCCTTGTCGTATATTTAGGGAAAATTTCAGACGTGATGAGCC
CCAGACCGACATTAACAACGAGAACAACGATATCAGCATACAAGACAACT
TTAAAAACAACAACGACGACCACAAAGACAAAATACCAAAGACGTTCAAA
ATATAATAAACAAAAACATCAACGTTTCGTCATCATCTCTAACCGAAAAG
CGCCACCATGTTGCGTGGCCGGAACGAAGGCAGGATCCTGGGGATATTTA
TGCATGGCTCACGAACGTTTTGTCACCGAACGCTTCTTCTTACCGCATCC
TTTAAAAGTGAAATTTACACGGCGCCGATCGTACGTCCAATTAGCCTTAG
CTAAGCTAATACAACAATGTTCTAGACACCCGGTCACGGCAAAACAGTAT
GAGAAATGTTGCGATAACGCACAACATAGACTTTATCAAAGAATGGGTTT
AGACTCTTAGTTTGTGACGTTTTTTTTCGATTATTTTTATTTATTTATAA
TTTGTAGTTGTAAATTTGTATATAGCAAAAAGTAGGGTCTACCCATTCGG
TATAGAAATAAAGTTCTCCGTTCTCCTAATAAATATACGCATAAAATTCT
ATGATTTTGAGTTTGATTGAATTATCTACATAAATATGAGCAAACCAG Coding sequence (CDS) from alignment at scaffold_106:252142..253439- >TCONS_00046165 ID=TCONS_00046165|Name=TCONS_00046165|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_106:252142..253439- (Clytia hemisphaerica)
GGAAAATTTCAGACGTGATGAGCCCCAGACCGACATTAACAACGAGAACA
ACGATATCAGCATACAAGACAACTTTAAAAACAACAACGACGACCACAAA
GACAAAATACCAAAGACGTTCAAAATATAATAAACAAAAACATCAACGTT
TCGTCATCATCTCTAACCGAAAAGCGCCACCATGTTGCGTGGCCGGAACG
AAGGCAGGATCCTGGGGATATTTATGCATGGCTCACGAACGTTTTGTCAC
CGAACGCTTCTTCTTACCGCATCCTTTAAAAGTGAAATTTACACGGCGCC
GATCGTACGTCCAATTAGCCTTAGCTAAGCTAATACAACAATGTTCTAGA
CACCCGGTCACGGCAAAACAGTATGAGAAATGTTGCGATAACGCACAACA
TAGACTTTATCAAAGAATGGGTTTAGACTCTTAGATGATTTTGATGCGAC
AGTGCTTCTTGTTGATATTCTCCATCCATTCATTCTCATGGACATCGCCA
TTAACTCATTTGAAGAAAGGTTTACAAGCTGGCGACGAAAATGCTTTGAA
CACGGATGATTTGAGTCTTCAGACACAATCAAACCAAGGGAAAATTTCAG
ACGTGATGAGCCCCAGACCGACATTAACAACGAGAACAACGATATCAGCA
TACAAGACAACTTTAAAAACAACAACGACGACCACAAAGACAAAATACCA
AAGACGTTCAAAATATAATAAACAAAAACATCAACGTTTCGTCATCATCT
CTAACCGAAAAGCGCCACCATGTTGCGTGGCCGGAACGAAGGCAGGATCC
TGGGGATATTTATGCATGGCTCACGAACGTTTTGTCACCGAACGCTTCTT
CTTACCGCATCCTTTAAAAGTGAAATTTACACGGCGCCGATCGTACGTCC
AATTAGCCTTAGCTAAGCTAATACAACAATGTTCTAGACACCCGGTCACG
GCAAAACAGTATGAGAAATGTTGCGATAACGCACAACATAGACTTTATCA
AAGAATGGGTTTAGACTCTTAGATGATTTTGATGCGACAGTGCTTCTTGT
TGATATTCTCCATCCATTCATTCTCATGGACATCGCCATTAACTCATTTG
AAGAAAGGTTTACAAGCTGGCGACGAAAATGCTTTGAACACGGATGATTT
GAGTCTTCAGACACAATCAAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046165-exon-scaffold_106-1575043694:253059..253439 | TCONS_00046165-exon-scaffold_106-1575043694:253059..253439 | Clytia hemisphaerica | exon |
| TCONS_00046165-exon-scaffold_106-1575043694:252142..252763 | TCONS_00046165-exon-scaffold_106-1575043694:252142..252763 | Clytia hemisphaerica | exon |
| TCONS_00046165-exon-scaffold_106-1510915933:253059..253439 | TCONS_00046165-exon-scaffold_106-1510915933:253059..253439 | Clytia hemisphaerica | exon |
| TCONS_00046165-exon-scaffold_106-1510915933:252142..252763 | TCONS_00046165-exon-scaffold_106-1510915933:252142..252763 | Clytia hemisphaerica | exon |
| TCONS_00046165-exon-scaffold_106-1491911889:253059..253439 | TCONS_00046165-exon-scaffold_106-1491911889:253059..253439 | Clytia hemisphaerica | exon |
| TCONS_00046165-exon-scaffold_106-1491911889:252142..252763 | TCONS_00046165-exon-scaffold_106-1491911889:252142..252763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:252142..253439 - |
Blast
The following BLAST results are available for this feature:
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