TCONS_00046164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046164
Unique NameTCONS_00046164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1022

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046164 ID=TCONS_00046164|Name=TCONS_00046164|organism=Clytia hemisphaerica|type=transcript|length=1022bp
GCTGATCAAAGCTTAGATACTTTTAGTATAAATAGGTTAGATCCAACTCA
ACTGAACCATCAATCAGAGTTTCCATACAAAGACAACACAAAGACACGAA
CAAGAAATTGTCGCTGACATCACACATCTTGAACATGACGAAGTCAACTT
CACCAGCAAATAAAATGGAGGTCTCAAAACAAGACAATACTACTGACGGA
TTAAACAACATTACATCAGCCTTTGGATTTTTCGCCCTGACACAATTGAT
CACAGGGCTTTGTTATGTATCCTATTATTCATACCACAGGAGTCTTTTTG
AATctcttttcaatgaaactggAATGAATATCTTTGCTGTGGTCAATGGA
ATACTGttgTTGATCAATGGAGTATCGAACGCAGCGACAGCTTACCAGAA
CAAAAGAGCAAAAGCTATTTTTGTTTTCTCGCTTGTTTTGAGCATCATTG
TTCTGGTCTGCAATGTTTTCATGGCTtacaaattgaaaaatatgttgAAA
TCAGCCAATGAGAAGTGTGTTTTGCAAGAAGCACTCCATGCTCACATTGA
TTATTGCAAAATCTGGAATCAGAAGATAAAGTATCTTCTTTGGGGAGCGG
CTGCTGGTCTTTTAAACGCTTTCAGTACCAAAATATGCTCTTGCTTTGGA
ATTGCTATGATGCAACAAAAATCAATGgttGAAGAGGAGCAGAAAACTCG
AGAGCTAGAAATGgtctaaaatacaaaattttgaaatagaacTAAAAACA
GACACTACATTCTCGTATTGTGTGTATTCGGGTTGTCTATTGTACAACCT
GAAGTTTTGCATTTTAAGGAATAtttagaaaagatttagaaattgATTAT
TTATGAATTGTAAATAGAGCTAAGCatcaaacttttatttatttagtaAA
AATTACCAAATTATATGAAGAAGAACTGCGGTTTGATTTTGAAATGGTCG
TTACGGCCGCTAGGAGAGAAAAATCTTTTCCGAATTCGAGTCATAAATTA
ATGAATCAAACTCCTGTGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00046164-protein

>TCONS_00046164-protein ID=TCONS_00046164-protein|Name=TCONS_00046164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MTKSTSPANKMEVSKQDNTTDGLNNITSAFGFFALTQLITGLCYVSYYSY
HRSLFESLFNETGMNIFAVVNGILLLINGVSNAATAYQNKRAKAIFVFSL
VLSIIVLVCNVFMAYKLKNMLKSANEKCVLQEALHAHIDYCKIWNQKIKY
LLWGAAAGLLNAFSTKICSCFGIAMMQQKSMVEEEQKTRELEMV
Run BLAST on NCBI

transcript from alignment at scaffold_106:248547..250523-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046164 ID=TCONS_00046164|Name=TCONS_00046164|organism=Clytia hemisphaerica|type=transcript|length=1977bp|location=Sequence derived from alignment at scaffold_106:248547..250523- (Clytia hemisphaerica)
GCTGATCAAAGCTTAGATACTTTTAGTATAAATAGGTTAGATCCAACTCA
ACTGAACCATCAATCAGAGTTTCCATACAAAGACAACACAAAGACACGAA
CAAGAAATTGTCGCTGACATCACACATCTTGAACATGACGAAGTCAACTT
CACCAGCAAATAAAATGGAGGTCTCAAAACAAGACAATACTACTGACGGA
TTAAACAACATTACATCAGCCTTTGGATTTTTCGCCCTGACACAATTGAT
CACAGGGCTTTGTTATGTATCCTATTATTCATACCACAGGAGTCTTTTTG
AATCTCTTTTCAATGAAACTGGAATGAATATCTTTGCTGTGGTCAATGGA
ATACTGGTAGGTTGACTGATAACTAGGAAGATTTTTCTCAATTCCTATTT
AAAGAAATTCTAGTTGACTATTTCTTTCTTTCAAAAAGTTTTCTAATGTT
CCTATGACGGAATTCATAAGTTTCTTTTTTACTTTTTAGTTGTTGATCAA
TGGAGTATCGAACGCAGCGACAGCTTACCAGAACAAAAGAGCAAAAGCTA
TTGTAAGTATTTTGGGATCATACTAATGTCATATAAAAATTTATAGTTAG
TGCTGTAGGGGTCATTGTTGATATTATAGAACCGTAAAAGAGTACTTTTC
AAAGGCCTTCGAAGGGTCTAGGAGCAAGTACTGAGAGAAGTTTTTAACCC
GTTTGTAGGCGCAGGAGTAGCTTCCAGTCTTTTTTCTCGTTTCTTGACAA
TGACAAAAGATATAAGATCATTTTAAGAAACCTCAAATAAATTTTCTTTA
TTCTTTAGTTTGTTTTCTCGCTTGTTTTGAGCATCATTGTTCTGGTCTGC
AATGTTTTCATGGCTTACAAATTGAAAAATATGTTGAAATCAGCCAATGA
GAAGTGTGTTTTGCAAGAAGGTAAGTCACGTGAGAAAATGCTTACATCTC
TTCGGTTTATTTCGCTATAACAAACTATTTCATGGATGCGCATGGAGCCT
AGTGAGAAGATTCATAAATTCTTTCCTGCACTATCTTGTGAACTTAGCTT
TTTCTGACCCTTTACTTTTACAGTTCTTTCTCGACCCTCTAAAAAATCAA
TCCCCCAGAACAAATTTTTTCGCACAAATTAATTTGACTTTCAATAAAAC
TAAAATCCTTATTCTTCTGATTCAGCACTCCATGCTCACATTGATTATTG
CAAAATCTGGAATCAGAAGATAAAGTATCTTCTTTGGGGAGCGGCTGCTG
GTCTTTTAAACGCTTTCAGTACCAAAATATGCTCTTGCTTTGGAATTGCT
ATGATGCAACAAAAATCAATGGTAAGCAGATGATGCTCTGCACCCCTGTC
TAATTTTTTTAATGTTTCAAATAATGATCAAATTTTGATCGCATTCCGGT
GGAAAATGTCGAAATTTTCCAATTTTTGCGACCCTTAGTGGGACCATGAA
GGTGGAACTGAAATTTGATTTTATGAATTTTCCAGCACTTACTAGTAGTG
GGACACTTTCAAAGTCCAAAAGAGGTACCCTAAAGGGCCACACATATTTG
CTTAAGTACCCCTCCTCCAGGGTTTCTTCATTTAAAATATTAAATATATG
TAGTTAAATATAATTGTACTTTTATTTTTCAGGTTGAAGAGGAGCAGAAA
ACTCGAGAGCTAGAAATGGTCTAAAATACAAAATTTTGAAATAGAACTAA
AAACAGACACTACATTCTCGTATTGTGTGTATTCGGGTTGTCTATTGTAC
AACCTGAAGTTTTGCATTTTAAGGAATATTTAGAAAAGATTTAGAAATTG
ATTATTTATGAATTGTAAATAGAGCTAAGCATCAAACTTTTATTTATTTA
GTAAAAATTACCAAATTATATGAAGAAGAACTGCGGTTTGATTTTGAAAT
GGTCGTTACGGCCGCTAGGAGAGAAAAATCTTTTCCGAATTCGAGTCATA
AATTAATGAATCAAACTCCTGTGAAAG

Coding sequence (CDS) from alignment at scaffold_106:248547..250523-

>TCONS_00046164 ID=TCONS_00046164|Name=TCONS_00046164|organism=Clytia hemisphaerica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_106:248547..250523- (Clytia hemisphaerica)
GTTGAAGAGGAGCAGAAAACTCGAGAGCTAGAAATGGTCTAACACTCCAT
GCTCACATTGATTATTGCAAAATCTGGAATCAGAAGATAAAGTATCTTCT
TTGGGGAGCGGCTGCTGGTCTTTTAAACGCTTTCAGTACCAAAATATGCT
CTTGCTTTGGAATTGCTATGATGCAACAAAAATCAATGTTTGTTTTCTCG
CTTGTTTTGAGCATCATTGTTCTGGTCTGCAATGTTTTCATGGCTTACAA
ATTGAAAAATATGTTGAAATCAGCCAATGAGAAGTGTGTTTTGCAAGAAG
TTGTTGATCAATGGAGTATCGAACGCAGCGACAGCTTACCAGAACAAAAG
AGCAAAAGCTATTATGACGAAGTCAACTTCACCAGCAAATAAAATGGAGG
TCTCAAAACAAGACAATACTACTGACGGATTAAACAACATTACATCAGCC
TTTGGATTTTTCGCCCTGACACAATTGATCACAGGGCTTTGTTATGTATC
CTATTATTCATACCACAGGAGTCTTTTTGAATCTCTTTTCAATGAAACTG
GAATGAATATCTTTGCTGTGGTCAATGGAATACTGGTTGAAGAGGAGCAG
AAAACTCGAGAGCTAGAAATGGTCTAACACTCCATGCTCACATTGATTAT
TGCAAAATCTGGAATCAGAAGATAAAGTATCTTCTTTGGGGAGCGGCTGC
TGGTCTTTTAAACGCTTTCAGTACCAAAATATGCTCTTGCTTTGGAATTG
CTATGATGCAACAAAAATCAATGTTTGTTTTCTCGCTTGTTTTGAGCATC
ATTGTTCTGGTCTGCAATGTTTTCATGGCTTACAAATTGAAAAATATGTT
GAAATCAGCCAATGAGAAGTGTGTTTTGCAAGAAGTTGTTGATCAATGGA
GTATCGAACGCAGCGACAGCTTACCAGAACAAAAGAGCAAAAGCTATTAT
GACGAAGTCAACTTCACCAGCAAATAAAATGGAGGTCTCAAAACAAGACA
ATACTACTGACGGATTAAACAACATTACATCAGCCTTTGGATTTTTCGCC
CTGACACAATTGATCACAGGGCTTTGTTATGTATCCTATTATTCATACCA
CAGGAGTCTTTTTGAATCTCTTTTCAATGAAACTGGAATGAATATCTTTG
CTGTGGTCAATGGAATACTGGTTGAAGAGGAGCAGAAAACTCGAGAGCTA
GAAATGGTCTAACACTCCATGCTCACATTGATTATTGCAAAATCTGGAAT
CAGAAGATAAAGTATCTTCTTTGGGGAGCGGCTGCTGGTCTTTTAAACGC
TTTCAGTACCAAAATATGCTCTTGCTTTGGAATTGCTATGATGCAACAAA
AATCAATGTTTGTTTTCTCGCTTGTTTTGAGCATCATTGTTCTGGTCTGC
AATGTTTTCATGGCTTACAAATTGAAAAATATGTTGAAATCAGCCAATGA
GAAGTGTGTTTTGCAAGAAGTTGTTGATCAATGGAGTATCGAACGCAGCG
ACAGCTTACCAGAACAAAAGAGCAAAAGCTATTATGACGAAGTCAACTTC
ACCAGCAAATAAAATGGAGGTCTCAAAACAAGACAATACTACTGACGGAT
TAAACAACATTACATCAGCCTTTGGATTTTTCGCCCTGACACAATTGATC
ACAGGGCTTTGTTATGTATCCTATTATTCATACCACAGGAGTCTTTTTGA
ATCTCTTTTCAATGAAACTGGAATGAATATCTTTGCTGTGGTCAATGGAA
TACTGGTTGAAGAGGAGCAGAAAACTCGAGAGCTAGAAATGGTCTAACAC
TCCATGCTCACATTGATTATTGCAAAATCTGGAATCAGAAGATAAAGTAT
CTTCTTTGGGGAGCGGCTGCTGGTCTTTTAAACGCTTTCAGTACCAAAAT
ATGCTCTTGCTTTGGAATTGCTATGATGCAACAAAAATCAATGTTTGTTT
TCTCGCTTGTTTTGAGCATCATTGTTCTGGTCTGCAATGTTTTCATGGCT
TACAAATTGAAAAATATGTTGAAATCAGCCAATGAGAAGTGTGTTTTGCA
AGAAGTTGTTGATCAATGGAGTATCGAACGCAGCGACAGCTTACCAGAAC
AAAAGAGCAAAAGCTATTATGACGAAGTCAACTTCACCAGCAAATAAAAT
GGAGGTCTCAAAACAAGACAATACTACTGACGGATTAAACAACATTACAT
CAGCCTTTGGATTTTTCGCCCTGACACAATTGATCACAGGGCTTTGTTAT
GTATCCTATTATTCATACCACAGGAGTCTTTTTGAATCTCTTTTCAATGA
AACTGGAATGAATATCTTTGCTGTGGTCAATGGAATACTGGTTGAAGAGG
AGCAGAAAACTCGAGAGCTAGAAATGGTCTAACACTCCATGCTCACATTG
ATTATTGCAAAATCTGGAATCAGAAGATAAAGTATCTTCTTTGGGGAGCG
GCTGCTGGTCTTTTAAACGCTTTCAGTACCAAAATATGCTCTTGCTTTGG
AATTGCTATGATGCAACAAAAATCAATGTTTGTTTTCTCGCTTGTTTTGA
GCATCATTGTTCTGGTCTGCAATGTTTTCATGGCTTACAAATTGAAAAAT
ATGTTGAAATCAGCCAATGAGAAGTGTGTTTTGCAAGAAGTTGTTGATCA
ATGGAGTATCGAACGCAGCGACAGCTTACCAGAACAAAAGAGCAAAAGCT
ATTATGACGAAGTCAACTTCACCAGCAAATAAAATGGAGGTCTCAAAACA
AGACAATACTACTGACGGATTAAACAACATTACATCAGCCTTTGGATTTT
TCGCCCTGACACAATTGATCACAGGGCTTTGTTATGTATCCTATTATTCA
TACCACAGGAGTCTTTTTGAATCTCTTTTCAATGAAACTGGAATGAATAT
CTTTGCTGTGGTCAATGGAATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029488XLOC_029488Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046164-exon-scaffold_106-1575043694:250168..250523TCONS_00046164-exon-scaffold_106-1575043694:250168..250523Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1575043694:249972..250034TCONS_00046164-exon-scaffold_106-1575043694:249972..250034Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1575043694:249604..249715TCONS_00046164-exon-scaffold_106-1575043694:249604..249715Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1575043694:249203..249348TCONS_00046164-exon-scaffold_106-1575043694:249203..249348Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1575043694:248547..248891TCONS_00046164-exon-scaffold_106-1575043694:248547..248891Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1510915933:250168..250523TCONS_00046164-exon-scaffold_106-1510915933:250168..250523Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1510915933:249972..250034TCONS_00046164-exon-scaffold_106-1510915933:249972..250034Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1510915933:249604..249715TCONS_00046164-exon-scaffold_106-1510915933:249604..249715Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1510915933:249203..249348TCONS_00046164-exon-scaffold_106-1510915933:249203..249348Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1510915933:248547..248891TCONS_00046164-exon-scaffold_106-1510915933:248547..248891Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1491911889:250168..250523TCONS_00046164-exon-scaffold_106-1491911889:250168..250523Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1491911889:249972..250034TCONS_00046164-exon-scaffold_106-1491911889:249972..250034Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1491911889:249604..249715TCONS_00046164-exon-scaffold_106-1491911889:249604..249715Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1491911889:249203..249348TCONS_00046164-exon-scaffold_106-1491911889:249203..249348Clytia hemisphaericaexon
TCONS_00046164-exon-scaffold_106-1491911889:248547..248891TCONS_00046164-exon-scaffold_106-1491911889:248547..248891Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046164-proteinTCONS_00046164-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:248547..250523 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.230218	0.296953	0.0494092	0.0966785	0.470787	0.51153	0.392725	0.735329	0.551594	2.31727	0.176845	0.348752	33.552	13.7828	17.4264	26.7376	10.7859	21.032	0.834988	1.16501	0	0	0.250173	0.227443	0.0468523	0.0418145	0.538528	0.574732	3.73441	2.88968
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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