TCONS_00046153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046153
Unique NameTCONS_00046153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046153 ID=TCONS_00046153|Name=TCONS_00046153|organism=Clytia hemisphaerica|type=transcript|length=1152bp
GACctggaatcttttttttatttgtaaacTCTAAAACTTTAATACTAGCT
GTACTCATTGTTTGATAGACTGAGTTAGTAGCttttattatttagaaatc
ATAACCTCTCATTGACATTATTGAACACAAAAACCAGCGAGAGAGACGCA
GAAGACACAAGAGAGGCAGGCTTTATATCATCGATCATCCGGATGATGAT
GATCATCtgaaaaacaGAAAGGAATGCTGAATGTCTCAACAACGTACTCT
AATTTCAAATTGATAGTATAATGGGATTTGTTTTCAATTGACTGGACATT
TGTTTGACTCATAACTGTGACAAAACAATGACAGACAGACTTTACAACGA
CAATAACAGTAACAATAACCAAAGAAGTGGCATCATAAATCAGGGAATTA
TTTAGTTTCAATTTTCTTACTAAATTTAGATAGCCATGTTTGGATTTGCT
TTGATAATTTGTAAGATCCTCGAACGTTTTAAGGCAAATAAATTGATCCT
GCACATTTGAGGAGTATCACAACCATTTTATTTGAGGAAAATCTTTATAA
AAAATTGAGTGTAAAATTGTTACTATATTTGACATAACATTTATTCTTTT
CGTCACCACTTCAACATCTTTTCTCTACACTAGATAATGATGAACCTGAA
GATATTGCCCTTGTTGAAAATGCTGAGAATATTGCTGGACTATTGACCCT
TTGTCAGGAGGCAGCAGCACTCGAAATAGGCTTTCAAACGCAAATTAAAC
AATGCATTGAACTGAAAGGCCCTAGCTCACTTTTGACTGGCGAGAAAACT
CTTCTTTTGTTGGCATCATACCCCAAATGTACAGATGGCATTCTTTATGG
CTTGCCTTTGGTTTTGGAAATGAATGGTGAAAAATTCTTGTACCTCAGGT
ACTGCGAAACTGGGATCTACAGAGGATTTTTCAAACAAAATCTTCGTGCA
TTGATAGGTGATTTTATTAAGGAGAATGATATTACCAAGGTTTTTCCTGT
TCGAATTTTTAATGATTGGGACATCAatgcaaaaatatttcaaagatcGG
AATCAAAGAAAGGACACAGTGAAGAAAACAACTCGCAAGTATTCTCAAAG
AATACAGTCAAAAAAGGTGGCTGTCTGAACAAAACGTTTCCTACCGCACT
NN
Run BLAST on NCBI

transcript from alignment at scaffold_106:34198..39544-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046153 ID=TCONS_00046153|Name=TCONS_00046153|organism=Clytia hemisphaerica|type=transcript|length=5347bp|location=Sequence derived from alignment at scaffold_106:34198..39544- (Clytia hemisphaerica)
GACCTGGAATCTTTTTTTTATTTGTAAACTCTAAAACTTTAATACTAGCT
GTACTCATTGTTTGATAGACTGAGTTAGTAGCTTTTATTATTTAGAAATC
ATAACCTCTCATTGACATTATTGAACACAAAAACCAGCGAGAGAGACGCA
GAAGACACAAGAGAGGCAGGCTTTATATCATCGATCATCCGGATGATGAT
GATCATCGTACGTTAGTACTGCACCCCCTCCCGGCCCCTGCGGCTGGCAG
GTCGGGCTCAGTCATAGCCTCACTCAGGCATACTGCGTCTGGAGACTAGC
AAGCCAAATCAGTACCATCTAGTTATGCAAAAAGCACACCTATGGGTATT
TTTATACCGTGAGATTGGGTAACTTGCATCATCAGTGGAGGCTAACTTGC
ATAGCCCTCAAATGAATGACCTGGCTGGTCATTAAAATACAAAGTTAAAT
CAAAACAAAAATGGTAAAGTAGAGCTGCGANNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGCGAGCAGAGCTGCGTAGTTGTATTTTAATGACCAGCCAGG
TCATTCATTCGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCC
AATTTCACGGTACCTACCTACAGCTACATACACAACATATCATCAATGTA
TATATGTCGTCAACGTCATTCATACCGTAACTTTGTGTAATGCGTGCCAC
CACCACAATCAATGTTAAATTTGTGTCATACTCATTAGCAGCTTTCTGGT
CTGTGAAGTAGTTAAAAGATCTCTTGTTTTTTTACATATTGTAGTCAGAG
TCACGGAAATCCTTGCATTTGCACAGGGTTCGACTAGTCTGGAGATCCAT
ACTCTCTACTCATTGGGAGTATGGTATTTTTCACCCAGTTTGAATTTATT
TACATTTGGTTTGGATTTCGTGCCAAAAAAGCCGTTGATAAGGTTAGCCA
ATCAGGTTCACGCACTTCCAATCAAAACAATAATATCACGTGGTTTCAAC
AATTTTTTAACAGCCAATAGAATTCTGCGACCAGATTTGGCATCTACAAA
AATACCCGGCTACTCTATCTGTTATTTCTATATTATTATTCGTTTTAACT
AAATGCTATACTTCTAAATCATAAACAGAAGTAGACGGGTCTCCCAGCTA
AGGGTTCAACATGCGGCAAATGCAACAGGTCGAAAAAGAAAGTGACAAAA
AAACCCCGTGCAAATACACTCGATCACTGCGACCCGTTGCATTTACACAG
AGTGGAAAAATGTTACACTTGATTATAAAAATATGCACAGATCAAAATTT
TAACCCGTGGACGAAAATTTTCTAAAAAGGCTAAAGAATCTTCTAAAGAG
AAAAATGAAAATGCCATTCGTCTTCGTTTTATGCCATTTTCATTTTAAAG
TTAAGATTTTGTTCTATTTGATGCTTGCACAGGGTCTGAAAAAATTGTTG
AAACCGTTGCAAATGCACACCCCATGCAAATGTAAGGATTTCTGTGACTG
ATATAAATAGATAAAACCTTCTGAGAAAGTAGGAAGGTCGAAGCTCTTGC
GCGTGCGGCAGTATTAAAAACAAAACATGATTTTTGAAAAAAAATCTTTA
AACTTATATCTCCTAGAAGAAAACCTTTTTCAGCATNAAAATGAAAATGC
CATTCGTCTTCGTTTTATGCCATTTTCATTTTAAAGTTAAGATTTTGTTC
TATTTGATGCTTGCACAGGGTCTGAAAAAATTGTTGAAACCGTTGCAAAT
GCACACCCCATGCAAATGTAAGGATTTCTGTGACTGATATAAATAGATAA
AACCTTCTGAGAAAGTAGGAAGGTCGAAGCTCTTGCGCGTGCGGCAGTAT
TAAAAACAAAACATGATTTTTTAAAAAAAATCTTTAAACTTATATCTCCT
AGAAGAAAACCTTTTTCAGCATAAAGGTTTTTTCCAGAGTAAAGAGAATT
TATTCAGCTTTCTTCTCCAAAAAAAAATTATGAAGATACGTTATCTCGTT
CCTTCAAAATTTGAAAATGAGTATTCAGGAGTGCGTTTTTTCACAGTTCT
TGTTCACAGCACGGCAATTTTTTTCACCGGGGGTACTAAAATCCAAAGCG
CTAGCCATCGGAGACAGCTATTGGCCTTAATTTTTTTGCATCATCCCCTG
TGATATAGTTGAGCTACCAAAACGTACCACGTTCGTTAATTAGAGCAAGC
TACTTTTTTTCAGGAAGTTAAAATATGTACTTAAAATGCAACTTTTCCCT
TAAAATCTTCAATATTTTTAAACAAATGTTGATTAGAATAAAAGACAAAT
GTTTTTTCTTTTCAAATCTGAAAAAACTTTTTATCAAACAGTTTCGTTCG
CCAAGCAAAAGTTTAGGGTATAGTGACCCCCGTCTACAGTTCGTGAAACT
ATAATAGAGAAAGCTATCAAAAATTAATTATAATAGAAGGCTGCTATGAC
CACAAAATCAGACATAGTAACAAAGTAACAGTACAAACAATAACCTGTGG
AAGTGTGTTATCAGCTTCATTGCATGTCATGTTCATTGGCAGATTGGGAC
TAATTTCGCAAATGACACCCACGTTTGCGAAATTCACAAAATTTAATTCC
CGCAATATTTAATCCCATTAAAGTACCGTGAGTTGGTCTATATTAATTTC
AACATCCTCTTTTTAATTCTCCATCACTCATCTTTGGAGACAGTTTAGAC
TAAATTTCCTATATATATCAAGATTATGAGATTTAGAGTGCAGGCCAATT
TCACTTTCGTTTTTAGTGCTTTTATTTTCGATTTCAAGCCGACATCTTAG
CAACAGGGTGATTGACCATAGTTGCAGGGGTTTGTGCAAAAAACCAAACA
TAGAAAATTTTTCAAATACCCCATTTTGATTGAACCAATAGAAAAATTTT
CCATGTTTGACTTTTTCGTACAAAATTTTCAAAATTAAAATGTTTTACAA
TCGTAAATTATTCTTGTAATCAAGGATTTTTTCCTATTTTAGTCTCAACA
TGCAGTGGATTGTTTAAAAACATACTCGAATATATTTATATCCGTGAATT
TTTGTAAACTTTATCAATTTTTTTATTAATTATATACTGAAGTTTTGAAT
TTGAAGTTTGAATTTTTTATCATCCCCATGGAATGAACCTCTTTCCAAAC
ATTTATTCTGAAGTCCTGAAGTCCTATCATCATCTTCTCTTTTAGTGAAA
AACAGAAAGGAATGCTGAATGTCTCAACAACGTACTCTAATTTCAAATTG
ATAGTATAATGGGTAAGTTAAATTTCCTAGAGTACCTTATACATAAAGGG
TTAAATTGTAGGAGGGGCAATTTTGTTTTTTTATTTTGTTTCATTTTTTC
TTTGACATGCTCTTGGCTCTTTTTGTTCGACTGATTTTTTTGATAGATGT
TCATGATTAAATGGAACTACCTGTGAATTTGTAAGTTTTTGTATTATGGT
TATTATTACAGTAAAAGTTTTAGCCTAGATTTTTGAAACAGAGTACTCTA
CTTAACAACTTAAGTCAAAGTTCTTTTGGTTCTTTTTCTGTTGAATATTG
CATTTTCTGTCTAATATTGCATTTTTCTAGTTTTACCTAGCTTTGAAGAA
TTTATTACAAGTCAGTAATGAGAATTATATAAGAATATTGATGTGAAAAA
GTAGTCAATATATAGAATAATTAATTCATAATAGTTCCCAATTATTAATT
TAAATTTAAATTCATTTATTAAAGAAAGGTCTCTCAAGAATGACCCTGTA
ATATATTTATAGGCAAAAAATCTCAAGCCATCTTCTTTAGACCTTTAGTT
CATAAATATTTTTCTTATTTTTTCCCACTATCCATTTAATTTCTATTTCT
AATCATTTATATGCATAAATTTCCACTGAAAAGTAACAATATGAATAATT
TTAAGAACAGAATCAATCAAATTAAACATGTGAAAGTTTATTCAATGAAA
ATAACAAACATGAAAATAAGTTACTAAGTAATTTTGATTTTAGGATTTGT
TTTCAATTGACTGGACATTTGTTTGACTCATAACTGTGACAAAACAATGA
CAGACAGACTTTACAACGACAATAACAGTAACAATAACCAAAGAAGTGGC
ATCATAAATCAGGGAATTATTTAGTTTCAATTTTCTTACTAAATTTAGAT
AGCCATGTTTGGATTTGCTTTGATAATTTGTAAGATCCTCGAACGTTTTA
AGGCAAATAAATTGATCCTGCACATTTGAGGAGTATCACAACCATTTTAT
TTGAGGAAAATCTTTATAAAAAATTGAGTGTAAAATTGTTACTATATTTG
ACATAACATTTATTCTTTTCGTCACCACTTCAACATCTTTTCTCTACACT
AGATAATGATGAACCTGAAGATATTGCCCTTGTTGAAAATGCTGAGAATA
TTGCTGGACTATTGACCCTTTGTCAGGAGGCAGCAGCACTCGAAATAGGC
TTTCAAACGCAAATTAAACAATGCATTGAACTGAAAGGCCCTAGCTCACT
TTTGACTGGCGAGAAAACTCTTCTTTTGTTGGCATCATACCCCAAATGTA
CAGATGGCATTCTTTATGGCTTGCCTTTGGTTTTGGAAATGAATGGTGAA
AAATTCTTGTACCTCAGGTAATTGTTTTGATACAAAAAAGAGATGAAAGT
ATCTTATCAATAAACTGTAGTATATATCTTAAAAACTTGTAATGTTTTTA
ATTCCTTAGGTACTGCGAAACTGGGATCTACAGAGGATTTTTCAAACAAA
ATCTTCGTGCATTGATAGGTGATTTTATTAAGGAGAATGATATTACCAAG
GTTTTTCCTGTTCGAATTTTTAATGATTGGGACATCAATGCAAAAATATT
TCAAAGATCGGAATCAAAGAAAGGTAAATTATAACTGTCTAAAAATTACC
TTAAGTGTGTCTCATAGTAAACAAAATAGCATTAGTTTTCAAAACTGTTT
TTTCAGTCAAAAGATGAATAAGATATTTTCTTATTCGAGTCTAAAAATTA
GAGAAAGACAATAAAATCTTTTTTTCAAGGAACTTGTTCAATATATTTTG
CTGTAATACTGAATAAAACTATTTGAATAATGTTCTACTGTGATAATTTT
CTAGGATCAAAGAATCACTCCGGTTTGATGGAAATAATAATAAAATTCAT
TCAGAATTCGATTTATCATTTCTCACGATCACAATTTTTAATGCAAATTC
TATTTATTACCTTTATATCAGAACATTTCCTTTTTTCAATGTATTTTCTC
ATTTAAGGACACAGTGAAGAAAACAACTCGCAAGTATTCTCAAAGAATAC
AGTCAAAAAAGGTGGCTGTCTGAACAAAACGTTTCCTACCGCACTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029482XLOC_029482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046153-exon-scaffold_106-1575043694:39338..39544TCONS_00046153-exon-scaffold_106-1575043694:39338..39544Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1575043694:36283..36349TCONS_00046153-exon-scaffold_106-1575043694:36283..36349Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1575043694:34928..35551TCONS_00046153-exon-scaffold_106-1575043694:34928..35551Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1575043694:34672..34835TCONS_00046153-exon-scaffold_106-1575043694:34672..34835Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1575043694:34198..34287TCONS_00046153-exon-scaffold_106-1575043694:34198..34287Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1510915933:39338..39544TCONS_00046153-exon-scaffold_106-1510915933:39338..39544Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1510915933:36283..36349TCONS_00046153-exon-scaffold_106-1510915933:36283..36349Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1510915933:34928..35551TCONS_00046153-exon-scaffold_106-1510915933:34928..35551Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1510915933:34672..34835TCONS_00046153-exon-scaffold_106-1510915933:34672..34835Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1510915933:34198..34287TCONS_00046153-exon-scaffold_106-1510915933:34198..34287Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1491911889:39338..39544TCONS_00046153-exon-scaffold_106-1491911889:39338..39544Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1491911889:36283..36349TCONS_00046153-exon-scaffold_106-1491911889:36283..36349Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1491911889:34928..35551TCONS_00046153-exon-scaffold_106-1491911889:34928..35551Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1491911889:34672..34835TCONS_00046153-exon-scaffold_106-1491911889:34672..34835Clytia hemisphaericaexon
TCONS_00046153-exon-scaffold_106-1491911889:34198..34287TCONS_00046153-exon-scaffold_106-1491911889:34198..34287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:34198..39544 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.969262	0.867363	0.569814	0.649496	1.03557	1.16291	1.99861	0.894156	1.67483	1.83016	2.03484	1.70107	1.20684	1.25139	0.427708	0.816367	0.554695	0.935848	0.912877	0.109546	1.72425	0.536757	0.308764	0.267553	0.798546	0.805932	0.611994	0.159727	0.349472	1.05093
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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