TCONS_00046139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046139
Unique NameTCONS_00046139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046139 ID=TCONS_00046139|Name=TCONS_00046139|organism=Clytia hemisphaerica|type=transcript|length=1349bp
TGTTTCAATCATTTTACAGAAGACTTTAAACATCTCAGATTCGTTTTTTT
TCTTACAGCAATAGAATGTCGTCTACAAAAAATATAGGTATTGAATTAAT
TCTGTTTGATATTTATTCAGATCATCAGAATTATTATTTCCAGCTTTACA
AATAATACAATTAgacattgaagaaaaaaaattacagtcattATTATGGA
TGAGGGATCtcctgaaaaagaaaagctGGCTATTAAATCAGGAAGTCCAC
AATCGCCCAGATGTTTGAAACCCCTGGATTATACCTTCATGTGTCTGACA
TCTTTCTCTGATTGTCTAGAAGAAGAACCAAGAGGATCGAAACCTCTCAA
AAGTAAGGAACCGATCATCGAAGATGATGGAGAACAAGTGCGAAAACGAA
AGACCAACGCTCTTCGATTGAGTAATAACGTGTTGACAGAATGGGGTGGC
TTTTTGGATACAGTTGAGAAGATTGTTGAAAATCCGGCAGATTTAGAATG
GATTGATGTTTCCTTCAATGATCTGACTACCATTGATTCGtGTTTACTGT
CGTTCCCCAAACTCAAAGTTTTATATCTTCATGGAAATGGTATTGAGAAG
ATTAACGAAGTTGATAAATTGACCGGACTTGAACATCTACGGACTCTAAC
GTTACATGGTAATCCCGTCGAGGATTCACGTAAGGGTGGTTATAGACAAT
ACGTCTTGTCTAGACTTCCGTTGTTAAAGACATTTGATTTTAGCGGCGTC
ACGCAATCGGATCGTGCAAGCGCCCATACTTGGAGCCAAATGGTTAAAgg
taaaaggaagaaaaaagtagagaattgattttaaaattattaactttttt
ttggcGACCTGGCTTTTAAGATTTCACAATGCTGTGACctctttattttt
tcaaatttacttgAAACTTTGAAGTGTGATTTAGGGGTCTActtttttat
ccattttgatgacTTTGGATCTATTTTTTGTCAGTCCAATCAAATATACT
TTGGAGATGTTAAATATAGAGCCTAGGCAAGAaattatttatttatgata
ATAATAACGGACGTCAAAGGCTAGACATACGACTCCGGCTGGTCTTTTTT
ATGTTCTTATTATTGTCTTATTTAAACGTATACGattgaaaaaaactaat
tttattttcaggtttaTCTTAAGATTTTCAAGAGATTATTTTTCTAGATA
TTTTTGGGTTCATTTTTCAGAAACCATTTTCACTGTACattgaaaagtta
aactaaCGAATTTAATGGTTTATTGTAATATATAAAGAAATTCTTATCAA
CAGATATAAATGCTGGATTTTTCGACCGGTCTGTCTATTCAAAACATTT
Run BLAST on NCBI

protein sequence of TCONS_00046139-protein

>TCONS_00046139-protein ID=TCONS_00046139-protein|Name=TCONS_00046139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MDEGSPEKEKLAIKSGSPQSPRCLKPLDYTFMCLTSFSDCLEEEPRGSKP
LKSKEPIIEDDGEQVRKRKTNALRLSNNVLTEWGGFLDTVEKIVENPADL
EWIDVSFNDLTTIDSCLLSFPKLKVLYLHGNGIEKINEVDKLTGLEHLRT
LTLHGNPVEDSRKGGYRQYVLSRLPLLKTFDFSGVTQSDRASAHTWSQMV
KGKRKKKVEN
Run BLAST on NCBI

transcript from alignment at scaffold_106:281342..284197+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046139 ID=TCONS_00046139|Name=TCONS_00046139|organism=Clytia hemisphaerica|type=transcript|length=2856bp|location=Sequence derived from alignment at scaffold_106:281342..284197+ (Clytia hemisphaerica)
TGTTTCAATCATTTTACAGAAGACTTTAAACATCTCAGATTCGTTTTTTT
TCTTACAGCAATAGAATGTCGTCTACAAAAAATATAGGTATTGAATTAAT
TCTGTTTGATATTTATTCAGATCATCAGAATTATTATTTCCAGCTTTACA
AATAATACAATTAgacattgaagaaaaaaaattacagtcattATTATGGA
TGAGGGATCtcctgaaaaagaaaagctGGCTATTAAATCAGGAAGTCCAC
AATCGCCCAGATGTTTGAAACCCCTGGATTATACCTTCATGTGTCTGACA
TCTTTCTCTGGTAAGGAAGGAGGAAGATAAATATTATGTTTATTTTGTAT
GTATGATATACACTATAGTTTACTTTGGCTGTTGGCAAGGATTTCTTTTA
TTTCCCTGTTGTTCAAAAATATATCTAATATTCAAACTTTGGGTATTCTT
ATAAAACTATTTCTCATGTCCTTTTCTCGATACACTGTTCTTATTTCATT
TTAAGAATAATTTTGCTAGAACCAAAGAGAACAGGAACAAGAATTTTGGC
GAAAAcctaagaaaaaattttaagaaccaATCCAAGCCAAGGTTAATCTA
AGCTCAATTACAAGTTATATAAACAAAACGTGTCAATAAGATTCGTATTC
ATTTTTAGATTGTCTAGAAGAAGAACCAAGAGGATCGAAACCTCTCAAAA
GTAAGGAACCGGTAAGtgatgaatttttcaaaaatatgataaaatctCTC
GGATAGTGGGTGCTACAGATCTTTCTATTATCTCATCTCATCGATAATAT
CCTTTCGAATCAGTCCATATTATCTTCATAATCAGTTCTATCGTCTTAAT
AATAATAAGACTACTTTCTTGAGACAATGCAAATTTTtaacattaaaatt
tgaataataaaataattcattttcaatatgaattctacatttgaaaatta
aaaaaaaaacgtttctaaACAGTCTCTGGTTATTTCCGTTTTTGAGACAT
AAAGACGGGTTGGGTCTATGTATTGTacacaacaaaaaatatttgtgtCG
GTATACCCGGAAAAATAGCTGAAAGATTTTGGAAATGCACTAAAGGAATG
ATAAATTTTAGCCATCCTACGGTCATTCATAATACATTTTTAGATCATCG
AAGATGATGGAGAACAAGTGCGAAAACGAAAGACCAACGCTCTTCGATTG
AGTAATAACGTGTTGACAGAATGGGGTGGCTTTTTGGATACAGTTGAGAA
GATTGTTGAAAATCCGGCAGATTTAGAATGGATTGATGTTTCCTTCAATG
ATCTGACTACCATTGATTCGGTATGTTTTGTCTAAAGACTTTTGATACag
cttctttctttttcaaaaaacaatttattgATGAGGCCGATTTAATGTCC
CATTGCTTAAAAGGAGGTACTGATACACACATCAAACAGTTCGATCTTCT
TGTGAAAAGGGAAGAGGCGAGGGAAGGGATGTAATCAAAGGTTAGgtaga
tttaaaaagaaaatattatctTTTAGTGGATTTATGAGTACTTGtgtttt
tcatttctcctttttgtcttacattataatatttttacAGTGCTATATGA
CCCCCGTGATTTTCCTATCTTTCCAGAACTTGCTTTTATCAGTTACATTT
AGGTTacctttctttttgaaaaaaaaaaaagattctttcttctagattat
taaaatttgaaaaagatcaaTACCAATATTTAGATCCCCGGATTTTCTAG
GAAAAGTACAATCAAAAATATCTTGATAAGACTAGTTTCGAAACTGTTTT
TTCAATCGCAAATTCAATCCCTTCATTAAAGTTTAATTTCGTCTTTATTT
GATTTTGGATTGAATTACATTCTCTGTTTATGATTTCCTCTTTTCTCAAC
TCCCTTTGCTTTGGTCAGTTGGTCAGAAAGTGACATGCTTCACGGGACTC
TCATTTATAAACACTGGTGTTTGATGAAAAACAATTTATTTCATCCCTCT
ACACAAACCCcaaatgaatttttcaaatctaatttttctgtttttagtGT
TTACTGTCGTTCCCCAAACTCAAAGTTTTATATCTTCATGGAAATGGTAT
TGAGAAGATTAACGAAGTTGATAAATTGACCGGACTTGAACATCTACGGA
CTCTAACGTTACATGGTAATCCCGTCGAGGATTCACGTAAGGGTGGTTAT
AGACAATACGTCTTGTCTAGACTTCCGTTGTTAAAGACATTTGATTTTAG
CGGCGTCACGCAATCGGATCGTGCAAGCGCCCATACTTGGAGCCAAATGG
TTAAAggtaaaaggaagaaaaaagtagagaattgattttaaaattattaa
cttttttttggcGACCTGGCTTTTAAGATTTCACAATGCTGTGACctctt
tattttttcaaatttacttgAAACTTTGAAGTGTGATTTAGGGGTCTAct
tttttatccattttgatgacTTTGGATCTATTTTTTGTCAGTCCAATCAA
ATATACTTTGGAGATGTTAAATATAGAGCCTAGGCAAGAaattatttatt
tatgataATAATAACGGACGTCAAAGGCTAGACATACGACTCCGGCTGGT
CTTTTTTATGTTCTTATTATTGTCTTATTTAAACGTATACGattgaaaaa
aactaattttattttcaggtttaTCTTAAGATTTTCAAGAGATTATTTTT
CTAGATATTTTTGGGTTCATTTTTCAGAAACCATTTTCACTGTACattga
aaagttaaactaaCGAATTTAATGGTTTATTGTAATATATAAAGAAATTC
TTATCAACAGATATAAATGCTGGATTTTTCGACCGGTCTGTCTATTCAAA
ACATTT

Coding sequence (CDS) from alignment at scaffold_106:281342..284197+

>TCONS_00046139 ID=TCONS_00046139|Name=TCONS_00046139|organism=Clytia hemisphaerica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_106:281342..284197+ (Clytia hemisphaerica)
ATGGATGAGGGATCtcctgaaaaagaaaagctGGCTATTAAATCAGGAAG
TCCACAATCGCCCAGATGTTTGAAACCCCTGGATTATACCTTCATGTGTC
TGACATCTTTCTCTGATTGTCTAGAAGAAGAACCAAGAGGATCGAAACCT
CTCAAAAGTAAGGAACCGATCATCGAAGATGATGGAGAACAAGTGCGAAA
ACGAAAGACCAACGCTCTTCGATTGAGTAATAACGTGTTGACAGAATGGG
GTGGCTTTTTGGATACAGTTGAGAAGATTGTTGAAAATCCGGCAGATTTA
GAATGGATTGATGTTTCCTTCAATGATCTGACTACCATTGATTCGtGTTT
ACTGTCGTTCCCCAAACTCAAAGTTTTATATCTTCATGGAAATGGTATTG
AGAAGATTAACGAAGTTGATAAATTGACCGGACTTGAACATCTACGGACT
CTAACGTTACATGGTAATCCCGTCGAGGATTCACGTAAGGGTGGTTATAG
ACAATACGTCTTGTCTAGACTTCCGTTGTTAAAGACATTTGATTTTAGCG
GCGTCACGCAATCGGATCGTGCAAGCGCCCATACTTGGAGCCAAATGGTT
AAAggtaaaaggaagaaaaaagtagagaattgaATGGATGAGGGATCtcc
tgaaaaagaaaagctGGCTATTAAATCAGGAAGTCCACAATCGCCCAGAT
GTTTGAAACCCCTGGATTATACCTTCATGTGTCTGACATCTTTCTCTGAT
TGTCTAGAAGAAGAACCAAGAGGATCGAAACCTCTCAAAAGTAAGGAACC
GATCATCGAAGATGATGGAGAACAAGTGCGAAAACGAAAGACCAACGCTC
TTCGATTGAGTAATAACGTGTTGACAGAATGGGGTGGCTTTTTGGATACA
GTTGAGAAGATTGTTGAAAATCCGGCAGATTTAGAATGGATTGATGTTTC
CTTCAATGATCTGACTACCATTGATTCGtGTTTACTGTCGTTCCCCAAAC
TCAAAGTTTTATATCTTCATGGAAATGGTATTGAGAAGATTAACGAAGTT
GATAAATTGACCGGACTTGAACATCTACGGACTCTAACGTTACATGGTAA
TCCCGTCGAGGATTCACGTAAGGGTGGTTATAGACAATACGTCTTGTCTA
GACTTCCGTTGTTAAAGACATTTGATTTTAGCGGCGTCACGCAATCGGAT
CGTGCAAGCGCCCATACTTGGAGCCAAATGGTTAAAggtaaaaggaagaa
aaaagtagagaattgaATGGATGAGGGATCtcctgaaaaagaaaagctGG
CTATTAAATCAGGAAGTCCACAATCGCCCAGATGTTTGAAACCCCTGGAT
TATACCTTCATGTGTCTGACATCTTTCTCTGATTGTCTAGAAGAAGAACC
AAGAGGATCGAAACCTCTCAAAAGTAAGGAACCGATCATCGAAGATGATG
GAGAACAAGTGCGAAAACGAAAGACCAACGCTCTTCGATTGAGTAATAAC
GTGTTGACAGAATGGGGTGGCTTTTTGGATACAGTTGAGAAGATTGTTGA
AAATCCGGCAGATTTAGAATGGATTGATGTTTCCTTCAATGATCTGACTA
CCATTGATTCGtGTTTACTGTCGTTCCCCAAACTCAAAGTTTTATATCTT
CATGGAAATGGTATTGAGAAGATTAACGAAGTTGATAAATTGACCGGACT
TGAACATCTACGGACTCTAACGTTACATGGTAATCCCGTCGAGGATTCAC
GTAAGGGTGGTTATAGACAATACGTCTTGTCTAGACTTCCGTTGTTAAAG
ACATTTGATTTTAGCGGCGTCACGCAATCGGATCGTGCAAGCGCCCATAC
TTGGAGCCAAATGGTTAAAggtaaaaggaagaaaaaagtagagaattgaA
TGGATGAGGGATCtcctgaaaaagaaaagctGGCTATTAAATCAGGAAGT
CCACAATCGCCCAGATGTTTGAAACCCCTGGATTATACCTTCATGTGTCT
GACATCTTTCTCTGATTGTCTAGAAGAAGAACCAAGAGGATCGAAACCTC
TCAAAAGTAAGGAACCGATCATCGAAGATGATGGAGAACAAGTGCGAAAA
CGAAAGACCAACGCTCTTCGATTGAGTAATAACGTGTTGACAGAATGGGG
TGGCTTTTTGGATACAGTTGAGAAGATTGTTGAAAATCCGGCAGATTTAG
AATGGATTGATGTTTCCTTCAATGATCTGACTACCATTGATTCGtGTTTA
CTGTCGTTCCCCAAACTCAAAGTTTTATATCTTCATGGAAATGGTATTGA
GAAGATTAACGAAGTTGATAAATTGACCGGACTTGAACATCTACGGACTC
TAACGTTACATGGTAATCCCGTCGAGGATTCACGTAAGGGTGGTTATAGA
CAATACGTCTTGTCTAGACTTCCGTTGTTAAAGACATTTGATTTTAGCGG
CGTCACGCAATCGGATCGTGCAAGCGCCCATACTTGGAGCCAAATGGTTA
AAggtaaaaggaagaaaaaagtagagaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029476XLOC_029476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046139-exon-scaffold_106-1491911889:281342..281651TCONS_00046139-exon-scaffold_106-1491911889:281342..281651Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1510915933:281342..281651TCONS_00046139-exon-scaffold_106-1510915933:281342..281651Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1575043694:281342..281651TCONS_00046139-exon-scaffold_106-1575043694:281342..281651Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1491911889:282000..282052TCONS_00046139-exon-scaffold_106-1491911889:282000..282052Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1510915933:282000..282052TCONS_00046139-exon-scaffold_106-1510915933:282000..282052Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1575043694:282000..282052TCONS_00046139-exon-scaffold_106-1575043694:282000..282052Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1491911889:282485..282661TCONS_00046139-exon-scaffold_106-1491911889:282485..282661Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1510915933:282485..282661TCONS_00046139-exon-scaffold_106-1510915933:282485..282661Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1575043694:282485..282661TCONS_00046139-exon-scaffold_106-1575043694:282485..282661Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1491911889:283389..284197TCONS_00046139-exon-scaffold_106-1491911889:283389..284197Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1510915933:283389..284197TCONS_00046139-exon-scaffold_106-1510915933:283389..284197Clytia hemisphaericaexon
TCONS_00046139-exon-scaffold_106-1575043694:283389..284197TCONS_00046139-exon-scaffold_106-1575043694:283389..284197Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046139-proteinTCONS_00046139-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:281342..284197 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.7411	26.099	7.01208	4.96418	76.2981	59.1974	30.6482	30.8276	20.2194	19.8151	13.873	12.6223	2.25603	2.25693	2.75674	3.52733	2.96701	4.28626	2.61349	2.4925	4.36296	3.96267	15.9501	15.2146	51.5898	40.1084	8.57724	8.78953	6.14842	7.63678
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00046139 vs. Swiss-Prot (Human)
Match: LRC51 (Leucine-rich repeat-containing protein 51 OS=Homo sapiens GN=LRTOMT PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.941e-46
Identity = 87/187 (46.52%), Postives = 119/187 (63.64%), Query Frame = 1 
Query:  271 PLDYTFMCLTSFSDCLEEEPR-GSKPLKSKEPIIEDDGEQVRKRKTNALRLSNNVLTEWGGFLDTVEKIVENPADLEWIDVSFNDLTTIDSCLLSFPKLKVLYLHGNGIEKINEVDKLTGLEHLRTLTLHGNPVEDSRKGGYRQYVLSRLPLLKTFDFSGVTQSDRASAHTWSQM-VKGKRKKKVEN 825
            PLDY+F  +    D + EEPR G +PLK  +           K  T +L L+NNVL +   F     +++E+P +L WID+SFNDLT+ID  L +F  L VLYLHGN I+++ EV+KL  L  LR+LTLHGNP+E+ +  GYRQYVL  L  + TFDFSGVT++DR +A  W +M +K K+    +N
Sbjct:   15 PLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKS---------GKSLTQSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEK--GYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKKAWTKQN 190
The following BLAST results are available for this feature:
BLAST of TCONS_00046139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC515.941e-4646.52Leucine-rich repeat-containing protein 51 OS=Homo ... [more]
back to top