|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046134 ID=TCONS_00046134|Name=TCONS_00046134|organism=Clytia hemisphaerica|type=transcript|length=1388bpRun BLAST on NCBI transcript from alignment at scaffold_106:91032..98838+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046134 ID=TCONS_00046134|Name=TCONS_00046134|organism=Clytia hemisphaerica|type=transcript|length=7807bp|location=Sequence derived from alignment at scaffold_106:91032..98838+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046134 vs. Swiss-Prot (Human)
Match: UBA1 (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3) HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0 Identity = 296/467 (63.38%), Postives = 364/467 (77.94%), Query Frame = 3
Query: 3 QVKVPKVVEFKSFRDSLAEPEQLITDFAKFERPSQLHLGFQALHEYKKVTGLLPRPKNKVDGDKFMDIAKDLNSKAQSKVDE--LDEKLLRELASQATGDVCPMQAVMGSMAAQETMKACSGKFMPVMQWMYFDSLESLKVEDRNENSEN--YQPQNSRYDAQIAVFGRDFQKKLNSSKYFVVGSGAIGCEMLKNFAMVGLGASPEGKVYVTDMDLIEKSNLNRQFLFRPHDVQQMKSSVAAKAVKVMNPDMNIVAHQNRVGTETEKIYNDDFFESLDGVANALDNIDARIYMDRRCVFYKKPLLESGTLGTKGNVQVVLPEVTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDSFEGLFTQGPETTTQYINDPKFMERTLKLQGVQLLETLETVDKA-INKRAKTFDDCVAMARILFQEYYHNTIAQLLFNFPPDQMTESGAPFWSGPKRCPKIIIFDTSN 1388
QVKVPK + FKS SLAEP+ ++TDFAKF RP+QLH+GFQALH++ G PRP+N+ D + + +A+ +N++A V + LDE L+R+LA A GD+ P+ A +G +AAQE MKACSGKFMP+MQW+YFD+LE L ED+ +E+ Q QN RYD Q+AVFG D Q+KL KYF+VG+GAIGCE+LKNFAM+GLG G++ VTDMD IEKSNLNRQFLFRP DV ++KS AA AV+ MNP + + +HQNRVG +TE+IY+DDFF++LDGVANALDN+DAR+YMDRRCV+Y+KPLLESGTLGTKGNVQVV+P +TESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARD FEGLF Q E QY+ DPKF+ERTL+L G Q LE LE V ++ + +R +T+ DCV A + Y N I QLL NFPPDQ+T SGAPFWSGPKRCP + FD +N
Sbjct: 294 QVKVPKKISFKSLVASLAEPDFVVTDFAKFSRPAQLHIGFQALHQFCAQHGRPPRPRNEEDAAELVALAQAVNARALPAVQQNNLDEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDALECLP-EDKEVLTEDKCLQRQN-RYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPHIRVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNVDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNN 758 The following BLAST results are available for this feature:
BLAST of TCONS_00046134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.