|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046106 ID=TCONS_00046106|Name=TCONS_00046106|organism=Clytia hemisphaerica|type=transcript|length=1783bp
ATATAAATCTGTAGCCaacaatttaatttgatttgacaatatatttcgaa
aactgtgtttcattttcaagtctaagaaagaagaaaaaatatgtaaaaat
atatagaaatctATATAATATTTGTTGTAACAAACACATCATATCAAACA
TACATCTtacccttaaaattttcaaaacataactgaaaaaaaaattctat
ttcaaGCCAAATCAATCACAAGCACCTTGCTCTTGTATTCGTTTTTAGTG
TTTAACGACGGTTTAATTTCTTTTATCTTGATAGCCTCTAGGGTCATTAA
CTCAGCCTCTACGGAACGCATAGATGAATCAACAATGGAACATCATCTAT
TGTTAGAGTTTTATTGCATCTAATAAAATGTGATCCCACGGGACTTGAGA
CATAGCGATGTTCTTTGAAACGACTTAGTAAATGTCGCATCGTCTGACCG
ACATAGCTCGCGTTACAGCGAGGACAACAAATTTGGTAAACTACGAAGCT
TCTCATCTCTTTCTCAATAGTGGGCTTTAAGGGCAATAAACATGATCTCA
GTTTTCTCGTTGTAAACACAATGATGCAGGGCGCATTACATTTTCGTAGA
GCATTCGAAAACTTTTCACTTATTTTGCCTCGATACTCAACGTAAACTTT
CATCTTTTCAACGCGGTCGACTTCATCTTCAGACTCCTTTTCCTCTGGAT
GATCTATTTTCCTGATTGTTTTTTGGATCAAAGGTTCAAAAAACGATTTT
GGATACTGGTTCTTAATCAACAAAACTCGCGCTCTCTGTAACGAAGTTAA
AAAGTTTTCTCTTGTGCTACAAGAACGGTAAATACGATGCACTAAACCAA
TAACATTAGAGCGCTTGTACCTCATAGGAGATAAGGCATAATAGTTCATC
ATTAGTCCAGTATTAGTTGGTTTATTGTACCAAGTTGACGTTAAGCAGCA
ATTTGAACGGGTTATCTTCATGTCAAGAAAAGGAATAGAACATTCTTTTT
CCTCCTCAAGAgtaaatttcagttcatttttGATGCCATTGATCTCGACT
AACTTTGATTGGATATTCTCTTTCTTTATCTCGCGTAAAATATCATCCAT
ATAGCGATTATAAATTTTAGCATCTCCTCGAATTTGGTCATCGTATTGAC
TCAACCATGCATTTGCCAAGAGTGGGGCAGGAGGGCTACCCATGGCAAGG
CCATCAATCTGACGGTAGTAGCCATCACTCGTTAACATTAAAACATCTTG
ACTACAAATAGTTAAGAGTTCCTTGAAAGTTTCTTGGTCAACCGGTGGTT
TCTTAAATCTACCCGAATATAGAAGATTTGTAGACACGTCGATAGCCTCG
AGAACAGGGACATTGGTGTAAAGTGATACGATATCAAAACTCACGAGGAC
TTCTCCTTCATCCAGGGTAATGTCTTTGAGGCTGTCAGATATCTCTTTCG
AAGAGGTATTGATGTTACATTCGGGCACTACGGTAAGCCAGTCGGAAACT
TTCTTGGCAATTTTGTGGTAAGCAGATCCTGGCATTGATAGAATTGGGCG
TAAGGTAAGTTTGTTTGTTAagtttgtttcaattttgtGACCACAACACA
GAgaataccgtgaagtcgggtatagacttgcatcaatggagggaaacttg
cgtagccatcaaatgactggtgaccaatcaaagcagcaaaatttcaaaac
aacaaatgaGTCTTTTAGTCCACTTTACTTGTCCTGGATGTAGTGCCAAC
TATATTGGTAAAACAGATAGAAATCTTCATGAG Run BLAST on NCBI protein sequence of TCONS_00046106-protein >TCONS_00046106-protein ID=TCONS_00046106-protein|Name=TCONS_00046106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MPGSAYHKIAKKVSDWLTVVPECNINTSSKEISDSLKDITLDEGEVLVSF
DIVSLYTNVPVLEAIDVSTNLLYSGRFKKPPVDQETFKELLTICSQDVLM
LTSDGYYRQIDGLAMGSPPAPLLANAWLSQYDDQIRGDAKIYNRYMDDIL
REIKKENIQSKLVEINGIKNELKFTLEEEKECSIPFLDMKITRSNCCLTS
TWYNKPTNTGLMMNYYALSPMRYKRSNVIGLVHRIYRSCSTRENFLTSLQ
RARVLLIKNQYPKSFFEPLIQKTIRKIDHPEEKESEDEVDRVEKMKVYVE
YRGKISEKFSNALRKCNAPCIIVFTTRKLRSCLLPLKPTIEKEMRSFVVY
QICCPRCNASYVGQTMRHLLSRFKEHRYVSSPVGSHFIRCNKTLTIDDVP
LLIHLCVP Run BLAST on NCBI transcript from alignment at scaffold_105:372250..374032 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046106 ID=TCONS_00046106|Name=TCONS_00046106|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at scaffold_105:372250..374032 (Clytia hemisphaerica)
CTCATGAAGATTTCTATCTGTTTTACCAATATAGTTGGCACTACATCCAG
GACAAGTAAAGTGGACTAAAAGACtcatttgttgttttgaaattttgctg
ctttgattggtcaccagtcatttgatggctacgcaagtttccctccattg
atgcaagtctatacccgacttcacggtattcTCTGTGTTGTGGTCacaaa
attgaaacaaactTAACAAACAAACTTACCTTACGCCCAATTCTATCAAT
GCCAGGATCTGCTTACCACAAAATTGCCAAGAAAGTTTCCGACTGGCTTA
CCGTAGTGCCCGAATGTAACATCAATACCTCTTCGAAAGAGATATCTGAC
AGCCTCAAAGACATTACCCTGGATGAAGGAGAAGTCCTCGTGAGTTTTGA
TATCGTATCACTTTACACCAATGTCCCTGTTCTCGAGGCTATCGACGTGT
CTACAAATCTTCTATATTCGGGTAGATTTAAGAAACCACCGGTTGACCAA
GAAACTTTCAAGGAACTCTTAACTATTTGTAGTCAAGATGTTTTAATGTT
AACGAGTGATGGCTACTACCGTCAGATTGATGGCCTTGCCATGGGTAGCC
CTCCTGCCCCACTCTTGGCAAATGCATGGTTGAGTCAATACGATGACCAA
ATTCGAGGAGATGCTAAAATTTATAATCGCTATATGGATGATATTTTACG
CGAGATAAAGAAAGAGAATATCCAATCAAAGTTAGTCGAGATCAATGGCA
TCaaaaatgaactgaaatttacTCTTGAGGAGGAAAAAGAATGTTCTATT
CCTTTTCTTGACATGAAGATAACCCGTTCAAATTGCTGCTTAACGTCAAC
TTGGTACAATAAACCAACTAATACTGGACTAATGATGAACTATTATGCCT
TATCTCCTATGAGGTACAAGCGCTCTAATGTTATTGGTTTAGTGCATCGT
ATTTACCGTTCTTGTAGCACAAGAGAAAACTTTTTAACTTCGTTACAGAG
AGCGCGAGTTTTGTTGATTAAGAACCAGTATCCAAAATCGTTTTTTGAAC
CTTTGATCCAAAAAACAATCAGGAAAATAGATCATCCAGAGGAAAAGGAG
TCTGAAGATGAAGTCGACCGCGTTGAAAAGATGAAAGTTTACGTTGAGTA
TCGAGGCAAAATAAGTGAAAAGTTTTCGAATGCTCTACGAAAATGTAATG
CGCCCTGCATCATTGTGTTTACAACGAGAAAACTGAGATCATGTTTATTG
CCCTTAAAGCCCACTATTGAGAAAGAGATGAGAAGCTTCGTAGTTTACCA
AATTTGTTGTCCTCGCTGTAACGCGAGCTATGTCGGTCAGACGATGCGAC
ATTTACTAAGTCGTTTCAAAGAACATCGCTATGTCTCAAGTCCCGTGGGA
TCACATTTTATTAGATGCAATAAAACTCTAACAATAGATGATGTTCCATT
GTTGATTCATCTATGCGTTCCGTAGAGGCTGAGTTAATGACCCTAGAGGC
TATCAAGATAAAAGAAATTAAACCGTCGTTAAACACTAAAAACGAATACA
AGAGCAAGGTGCTTGTGATTGATTTGGCttgaaatagaatttttttttca
gttatgttttgaaaattttaagggtaAGATGTATGTTTGATATGATGTGT
TTGTTACAACAAATATTATATagatttctatatatttttacatatttttt
cttctttcttagacttgaaaatgaaacacagttttcgaaatatattgtca
aatcaaattaaattgttGGCTACAGATTTATAT Coding sequence (CDS) from alignment at scaffold_105:372250..374032 >TCONS_00046106 ID=TCONS_00046106|Name=TCONS_00046106|organism=Clytia hemisphaerica|type=CDS|length=1227bp|location=Sequence derived from alignment at scaffold_105:372250..374032 (Clytia hemisphaerica)
ATGCCAGGATCTGCTTACCACAAAATTGCCAAGAAAGTTTCCGACTGGCT
TACCGTAGTGCCCGAATGTAACATCAATACCTCTTCGAAAGAGATATCTG
ACAGCCTCAAAGACATTACCCTGGATGAAGGAGAAGTCCTCGTGAGTTTT
GATATCGTATCACTTTACACCAATGTCCCTGTTCTCGAGGCTATCGACGT
GTCTACAAATCTTCTATATTCGGGTAGATTTAAGAAACCACCGGTTGACC
AAGAAACTTTCAAGGAACTCTTAACTATTTGTAGTCAAGATGTTTTAATG
TTAACGAGTGATGGCTACTACCGTCAGATTGATGGCCTTGCCATGGGTAG
CCCTCCTGCCCCACTCTTGGCAAATGCATGGTTGAGTCAATACGATGACC
AAATTCGAGGAGATGCTAAAATTTATAATCGCTATATGGATGATATTTTA
CGCGAGATAAAGAAAGAGAATATCCAATCAAAGTTAGTCGAGATCAATGG
CATCaaaaatgaactgaaatttacTCTTGAGGAGGAAAAAGAATGTTCTA
TTCCTTTTCTTGACATGAAGATAACCCGTTCAAATTGCTGCTTAACGTCA
ACTTGGTACAATAAACCAACTAATACTGGACTAATGATGAACTATTATGC
CTTATCTCCTATGAGGTACAAGCGCTCTAATGTTATTGGTTTAGTGCATC
GTATTTACCGTTCTTGTAGCACAAGAGAAAACTTTTTAACTTCGTTACAG
AGAGCGCGAGTTTTGTTGATTAAGAACCAGTATCCAAAATCGTTTTTTGA
ACCTTTGATCCAAAAAACAATCAGGAAAATAGATCATCCAGAGGAAAAGG
AGTCTGAAGATGAAGTCGACCGCGTTGAAAAGATGAAAGTTTACGTTGAG
TATCGAGGCAAAATAAGTGAAAAGTTTTCGAATGCTCTACGAAAATGTAA
TGCGCCCTGCATCATTGTGTTTACAACGAGAAAACTGAGATCATGTTTAT
TGCCCTTAAAGCCCACTATTGAGAAAGAGATGAGAAGCTTCGTAGTTTAC
CAAATTTGTTGTCCTCGCTGTAACGCGAGCTATGTCGGTCAGACGATGCG
ACATTTACTAAGTCGTTTCAAAGAACATCGCTATGTCTCAAGTCCCGTGG
GATCACATTTTATTAGATGCAATAAAACTCTAACAATAGATGATGTTCCA
TTGTTGATTCATCTATGCGTTCCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046106-exon-scaffold_105-1491911889:372250..374032 | TCONS_00046106-exon-scaffold_105-1491911889:372250..374032 | Clytia hemisphaerica | exon |
| TCONS_00046106-exon-scaffold_105-1510915933:372250..374032 | TCONS_00046106-exon-scaffold_105-1510915933:372250..374032 | Clytia hemisphaerica | exon |
| TCONS_00046106-exon-scaffold_105-1575043694:372250..374032 | TCONS_00046106-exon-scaffold_105-1575043694:372250..374032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:372250..374032 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
