TCONS_00046104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046104
Unique NameTCONS_00046104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046104 ID=TCONS_00046104|Name=TCONS_00046104|organism=Clytia hemisphaerica|type=transcript|length=713bp
AAGAATGGATTACAATGCCAACGCCGTGGATTGAAGCACCTTGAGCGTTT
CTGGAGGCGGAAGAAGTAAATAGAGTAGAGTTACCGAGAGTATGAGACAT
GATTTCAGGGTCGCTCGGTTTGTGGACGTATCGATGTTCTTGTACACAAA
GGACTTTGTTGTCATAATTTGTAACCAAGTGATCTAATTCAGAACGAGAC
GTCTTACTTGATAGTGATCGACAGTTCAAGGTACCAATTTTGTATGTTTT
CGAGGGTATGGATAATCTGACTTTTCGTTTTCCGTTAGAGCTAGCTCTTC
CAAGTGGGTTGGGAACCAGATCATCATTGGACGTTGTTGGATCAGCGTCA
GGAGACGATATGTCAGATGAAGGAACAAGGGCTTTAACCTTGGTGCTTGT
AATTGAATTCGTCATAACTTTTTCTAGTAGCTATAAATTAGTCATAGTGG
TGCGCCACGCCTACCATGACGCGCAGTAGCCAGATTTTGACTGTGTGCCC
TCTGCCGTTGTTGTTCGAAAACAATCCTCCGCCAGACGGTTGTGATGCTG
GACCAAATCAACGATGTATTGTAGACTGCTTCAGCAACTACCAACTCTCC
TGCAGCCAGAGAGTGGGGTTGTTTTATCGAGGTTTTCCATTCCTCTAGAT
CAGCTGTGTTTCGTTCCAAACAGGGGTACCACGTGAAGGCAACTGGCTCG
CGCCATACACAGC
Run BLAST on NCBI

protein sequence of TCONS_00046104-protein

>TCONS_00046104-protein ID=TCONS_00046104-protein|Name=TCONS_00046104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MTNSITSTKVKALVPSSDISSPDADPTTSNDDLVPNPLGRASSNGKRKVR
LSIPSKTYKIGTLNCRSLSSKTSRSELDHLVTNYDNKVLCVQEHRYVHKP
SDPEIMSHTLGNSTLFTSSASRNAQGASIHGVGIVIHS
Run BLAST on NCBI

transcript from alignment at scaffold_105:342619..343331

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046104 ID=TCONS_00046104|Name=TCONS_00046104|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at scaffold_105:342619..343331 (Clytia hemisphaerica)
GCTGTGTATGGCGCGAGCCAGTTGCCTTCACGTGGTACCCCTGTTTGGAA
CGAAACACAGCTGATCTAGAGGAATGGAAAACCTCGATAAAACAACCCCA
CTCTCTGGCTGCAGGAGAGTTGGTAGTTGCTGAAGCAGTCTACAATACAT
CGTTGATTTGGTCCAGCATCACAACCGTCTGGCGGAGGATTGTTTTCGAA
CAACAACGGCAGAGGGCACACAGTCAAAATCTGGCTACTGCGCGTCATGG
TAGGCGTGGCGCACCACTATGACTAATTTATAGCTACTAGAAAAAGTTAT
GACGAATTCAATTACAAGCACCAAGGTTAAAGCCCTTGTTCCTTCATCTG
ACATATCGTCTCCTGACGCTGATCCAACAACGTCCAATGATGATCTGGTT
CCCAACCCACTTGGAAGAGCTAGCTCTAACGGAAAACGAAAAGTCAGATT
ATCCATACCCTCGAAAACATACAAAATTGGTACCTTGAACTGTCGATCAC
TATCAAGTAAGACGTCTCGTTCTGAATTAGATCACTTGGTTACAAATTAT
GACAACAAAGTCCTTTGTGTACAAGAACATCGATACGTCCACAAACCGAG
CGACCCTGAAATCATGTCTCATACTCTCGGTAACTCTACTCTATTTACTT
CTTCCGCCTCCAGAAACGCTCAAGGTGCTTCAATCCACGGCGTTGGCATT
GTAATCCATTCTT

Coding sequence (CDS) from alignment at scaffold_105:342619..343331

>TCONS_00046104 ID=TCONS_00046104|Name=TCONS_00046104|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_105:342619..343331 (Clytia hemisphaerica)
ATGACGAATTCAATTACAAGCACCAAGGTTAAAGCCCTTGTTCCTTCATC
TGACATATCGTCTCCTGACGCTGATCCAACAACGTCCAATGATGATCTGG
TTCCCAACCCACTTGGAAGAGCTAGCTCTAACGGAAAACGAAAAGTCAGA
TTATCCATACCCTCGAAAACATACAAAATTGGTACCTTGAACTGTCGATC
ACTATCAAGTAAGACGTCTCGTTCTGAATTAGATCACTTGGTTACAAATT
ATGACAACAAAGTCCTTTGTGTACAAGAACATCGATACGTCCACAAACCG
AGCGACCCTGAAATCATGTCTCATACTCTCGGTAACTCTACTCTATTTAC
TTCTTCCGCCTCCAGAAACGCTCAAGGTGCTTCAATCCACGGCGTTGGCA
TTGTAATCCATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029448XLOC_029448Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046104-proteinTCONS_00046104-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046104-exon-scaffold_105-1491911889:342619..343331TCONS_00046104-exon-scaffold_105-1491911889:342619..343331Clytia hemisphaericaexon
TCONS_00046104-exon-scaffold_105-1510915933:342619..343331TCONS_00046104-exon-scaffold_105-1510915933:342619..343331Clytia hemisphaericaexon
TCONS_00046104-exon-scaffold_105-1575043694:342619..343331TCONS_00046104-exon-scaffold_105-1575043694:342619..343331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:342619..343331 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.343218	0.159404	0.467855	0.284784	0	0.543003	0.338902	0	0.146951	0.0713169	0.0937618	0.280894	0.194474	0.119913	0.686322	0.264216	0.379139	0.149657	0.234908	0.0680593	0	0.0807105	0	0.226731	0.0674508	0.0965219	0.618065	0.07813	0.318408
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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