TCONS_00046091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046091
Unique NameTCONS_00046091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046091 ID=TCONS_00046091|Name=TCONS_00046091|organism=Clytia hemisphaerica|type=transcript|length=270bp
AAAATTACTTTTATCCGAGCTTAGGCCacaaagttttttatttaagtTGC
TTTTCCAACCACCCTGGCTATTACAAACCCCCTTCTTTATTAGGTTTCGA
GATTTTTTCCATCTCCGCTTCTTCCAGACCGCCCTCTATTAGAGACATTA
CAGTACTCACCTcattattttagttttgattttttattggtGTTGCTGTT
GTTTGATTGATAGCATTAGGACCGCAATTTAAATCATTGTCTATCCACAT
TAAGGTTTTCAGGTTCTGTA
Run BLAST on NCBI

transcript from alignment at scaffold_105:50935..51204

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046091 ID=TCONS_00046091|Name=TCONS_00046091|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_105:50935..51204 (Clytia hemisphaerica)
TACAGAACCTGAAAACCTTAATGTGGATAGACAATGATTTAAATTGCGGT
CCTAATGCTATCAATCAAACAACAGCAACaccaataaaaaatcaaaacta
aaataatgAGGTGAGTACTGTAATGTCTCTAATAGAGGGCGGTCTGGAAG
AAGCGGAGATGGAAAAAATCTCGAAACCTAATAAAGAAGGGGGTTTGTAA
TAGCCAGGGTGGTTGGAAAAGCAacttaaataaaaaactttgtGGCCTAA
GCTCGGATAAAAGTAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029435XLOC_029435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046091-exon-scaffold_105-1491911889:50935..51204TCONS_00046091-exon-scaffold_105-1491911889:50935..51204Clytia hemisphaericaexon
TCONS_00046091-exon-scaffold_105-1510915933:50935..51204TCONS_00046091-exon-scaffold_105-1510915933:50935..51204Clytia hemisphaericaexon
TCONS_00046091-exon-scaffold_105-1575043694:50935..51204TCONS_00046091-exon-scaffold_105-1575043694:50935..51204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:50935..51204 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	3.85006	3.1389	2.29279	1.81179	0.728616	4.09273	1.43271	0	0	0.377437	0.753824	1.95713	0	0	0	0	0	0	0	0	0	0	1.21694	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top