TCONS_00046088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046088
Unique NameTCONS_00046088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046088 ID=TCONS_00046088|Name=TCONS_00046088|organism=Clytia hemisphaerica|type=transcript|length=826bp
attttttccataattttcTCTGGGAGAGACGCTTCCATTTTTACTGAGTT
GAGAATGACCCCAAGGAACTCTAACCTCTGACAGGGTTCTAGGACCAACT
TTTAGAAGTTTATCACAAACCCCGAATTTTCTAGAAGAAAGATCAGAGTA
TCCCTCGTGACTAATAACTCTTCCTTTGTCTGTGCCATTAGCCAATtctg
atgaaaatattttagttttCCTGCAAGAGGGGGCTTTTTTGGTGGtttta
tcatttgaaaaagAGATTTTATCGGTTTGCCCCCCCTGACGCCTCTTGAA
AACGAGGGCAAGGGGTCCTTCGGAAAGGGCTAAGTACTGGTGTTGGATGA
TTTGACCATACCCTTGTGAATATCTCTCAATTTCTTTTTGGCCTTGGAAC
TTCGAACTATCTCCTCTTCGAACTTGTTCCCGAACAAGGTGATGGAGTCA
TTTTCTTCAAATGCTGGTTCCCAGTCAGAAAGCATAGTCTTTGCACACTT
GTGATGCCTGGCCAACTAGTGTAACAACAGTGTCCAAGTATTGACTGATG
TTCTCTAATTTTGCAATTTCATTGTCTCTCAGTACCTTGTCTTCTTCTGA
GACATCTTCTTCCAGAAGTTGCTTGCTCTCTGTTGAACATCCTTCCACAC
CTCTGACAGAGGGCCAAAAATGTTGCGAATAGCAGTTTGGATACCTGTTA
AATAACCATCCAATCTGAGATTTCTTGCCTTTGCAAAGGTCTCATTAATC
ATCTCTTTAATATAGATATAAACTTTAGGTGGCTTTTCGATGTTAGTCGG
TACTGCGCATCCCTCTAAAATCTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_105:25341..26166

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046088 ID=TCONS_00046088|Name=TCONS_00046088|organism=Clytia hemisphaerica|type=transcript|length=826bp|location=Sequence derived from alignment at scaffold_105:25341..26166 (Clytia hemisphaerica)
AGAAGATTTTAGAGGGATGCGCAGTACCGACTAACATCGAAAAGCCACCT
AAAGTTTATATCTATATTAAAGAGATGATTAATGAGACCTTTGCAAAGGC
AAGAAATCTCAGATTGGATGGTTATTTAACAGGTATCCAAACTGCTATTC
GCAACATTTTTGGCCCTCTGTCAGAGGTGTGGAAGGATGTTCAACAGAGA
GCAAGCAACTTCTGGAAGAAGATGTCTCAGAAGAAGACAAGGTACTGAGA
GACAATGAAATTGCAAAATTAGAGAACATCAGTCAATACTTGGACACTGT
TGTTACACTAGTTGGCCAGGCATCACAAGTGTGCAAAGACTATGCTTTCT
GACTGGGAACCAGCATTTGAAGAAAATGACTCCATCACCTTGTTCGGGAA
CAAGTTCGAAGAGGAGATAGTTCGAAGTTCCAAGGCCAAAAAGAAATTGA
GAGATATTCACAAGGGTATGGTCAAATCATCCAACACCAGTACTTAGCCC
TTTCCGAAGGACCCCTTGCCCTCGTTTTCAAGAGGCGTCAGGGGGGGCAA
ACCGATAAAATCTctttttcaaatgataaaaCCACCAAAAAAGCCCCCTC
TTGCAGGaaaactaaaatattttcatcagaATTGGCTAATGGCACAGACA
AAGGAAGAGTTATTAGTCACGAGGGATACTCTGATCTTTCTTCTAGAAAA
TTCGGGGTTTGTGATAAACTTCTAAAAGTTGGTCCTAGAACCCTGTCAGA
GGTTAGAGTTCCTTGGGGTCATTCTCAACTCAGTAAAAATGGAAGCGTCT
CTCCCAGAgaaaattatggaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029432XLOC_029432Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046088-exon-scaffold_105-1491911889:25341..26166TCONS_00046088-exon-scaffold_105-1491911889:25341..26166Clytia hemisphaericaexon
TCONS_00046088-exon-scaffold_105-1510915933:25341..26166TCONS_00046088-exon-scaffold_105-1510915933:25341..26166Clytia hemisphaericaexon
TCONS_00046088-exon-scaffold_105-1575043694:25341..26166TCONS_00046088-exon-scaffold_105-1575043694:25341..26166Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:25341..26166 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0612751	0.0739258	0	0	0	0	0	0	0	0	0	0	0.0442431	0	0	0	0	0	0	0.0617356	0.110195	0	0.0841449	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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