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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046049 ID=TCONS_00046049|Name=TCONS_00046049|organism=Clytia hemisphaerica|type=transcript|length=2513bpRun BLAST on NCBI protein sequence of TCONS_00046049-protein >TCONS_00046049-protein ID=TCONS_00046049-protein|Name=TCONS_00046049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp MADFFSKPKRSKVKTDGQSSKSAPKIIPWVEKYRPKQVTDVAYQNEVVAVRun BLAST on NCBI transcript from alignment at scaffold_105:360121..384210- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046049 ID=TCONS_00046049|Name=TCONS_00046049|organism=Clytia hemisphaerica|type=transcript|length=24090bp|location=Sequence derived from alignment at scaffold_105:360121..384210- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_105:360121..384210- >TCONS_00046049 ID=TCONS_00046049|Name=TCONS_00046049|organism=Clytia hemisphaerica|type=CDS|length=13806bp|location=Sequence derived from alignment at scaffold_105:360121..384210- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046049 vs. Swiss-Prot (Human)
Match: RFC4 (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2) HSP 1 Score: 438.728 bits (1127), Expect = 4.174e-146 Identity = 212/338 (62.72%), Postives = 269/338 (79.59%), Query Frame = 2
Query: 224 TDGQSSKSAPKIIPWVEKYRPKQVTDVAYQNEVVAVLQNTVKGDDFPNLLFYGPPGTGKTSTILAVCRQLFGHDLYKSRTLELNASDERGIQVVRDKVKTFASQSVSAKRPDGTPCPPFKIVILDEADSMTKHAQAALRRTMEKQTKTTRFCLICNYVSRIIEPITSRCAKFRFKPLSIDTITERLAMISKGENVKINNSAIDTLIKAAEGDMRKAITFLQSAHRLKAGEEEITSNDIVEMAGIIPAEIIESLTQTFSSGSFDKLDAKIKEIMMNGYSGSQLVTQIHDSLVESEVLNDNQKAVIMEKLSVVDKCLCDGADEYLQIMAAAAVIMEQFNK 1237
+ G++ K+ P +PWVEKYRPK V +VA+Q EVVAVL+ +++G D PNLLFYGPPGTGKTSTILA R+LFG +L++ R LELNASDERGIQVVR+KVK FA +VS R DG PCPPFKIVILDEADSMT AQAALRRTMEK++KTTRFCLICNYVSRIIEP+TSRC+KFRFKPLS +RL I+K ENVKI++ I L+K +EGD+RKAITFLQSA RL G +EIT I ++AG+IPAE I+ + SGSFDKL+A +K+++ G++ +QLV Q+HD +VE+ L+D QK++I EKL+ VDKCL DGADE+LQ+++ A +M+Q ++
Sbjct: 28 SSGENKKAKP--VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGG-KEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENN-LSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQ 361 The following BLAST results are available for this feature:
BLAST of TCONS_00046049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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