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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046045 ID=TCONS_00046045|Name=TCONS_00046045|organism=Clytia hemisphaerica|type=transcript|length=894bp
gtcgttttttattttatcgatGATTATCATGTGcttcaaatgtttttcat
tcgattatttatttttcagattgattttttCCATTGTTTGTTTCATCGtt
tcaaatgacgtcatcggttccAAATTATTTCCACattcccAGCATGACAG
CACGCATGATAAGTTACACCCGTCGTTTTTGACGCCGTTTCTACGATTAC
GTTATTTATTCATTCCGTCTCTACAGTTCTGTTTGCGTTCAAACATTACT
ACCTTCATCGTGGCTTGTTTTTAGATGTATATTTAACACTTCACTAACTT
GACTATTATTACGTCAACCATCACTAGTTTTGGTGGCGTGTCCATTCTAA
CGCCCTTACGTTTCCACCTTATGGATTACCttagttgaaaataaaaaaga
gtgcAGTGCTAAAACTCATGTTCACTATTGATTTCGATTGGATCATTTCC
CTTGTAAATATCCGACTCTTTTCGCTTACTCGGTGAAATTTTGTTCAGCA
AGTCAGGGAAGAAATTTAGATACTATTTTTAGTGGAAAACCCTGTCAAAA
ATGGCCTCGGTGAAAagatgaaacatttttttaatatttgctcCCAGGAT
TCTTTTGAACGGTTTAGGTTTGACACCTCCAAGGGGTGAAACAATCATGG
TTAAATTACTTAAGTGGCTGTCAAAGTTTTTACGGTCTTTTTCGGAAGAG
ACTCATATGGGCACTAAATATTGGATGGTTTAAAATTGCTCTTCATTTCA
AACTGATGAACGTTTTTTAGTATATATACgacaaatatttatattatatt
tagataagaatattttatcatTATATATAGAATTGATAAATACTTATACT
GTAAATACAGGCATTTCTTTGTAATCAATTGTTTTTTTAGCTGT Run BLAST on NCBI transcript from alignment at scaffold_105:297166..298609- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046045 ID=TCONS_00046045|Name=TCONS_00046045|organism=Clytia hemisphaerica|type=transcript|length=1444bp|location=Sequence derived from alignment at scaffold_105:297166..298609- (Clytia hemisphaerica)
GTCGTTTTTTATTTTATCGATGATTATCATGTGCTTCAAATGTTTTTCAT
TCGATTATTTATTTTTCAGATTGATTTTTTCCATTGTTTGTTTCATCGTT
TCAAATGACGTCATCGGTTCCAAATTATTTCCACGTAAGTATATGTAATC
ATTTACTTGGTTTCCGGCTGATGTGAAAATGCCTAAAGCCTAAATTTTTC
TGCATATCGGAATTTTTTGAACAAATGAATCTATTCAAAAAACTTAGAAA
ATATGGCTTGGTTAGCATGTACCAAACTCTTCTTGGTGGACTGAAAAGAC
CAAGGGAAGTTCAGTAAAATGTACAATTCGGACTTTCATGTGACTGAGAC
ACAAGTCTTGGTTGTAGAGAGTTGAACGATTTTCAGAATTTAAGTTTCTT
TCTGTAGTAAAAATAGCGTATAAAGCCTAAAATACCCTAACTTTGACCTA
GAAGTAAGAAAAGGCTTTGCAAAAACATAGGCTGAAAATTCCAAAACAGG
TTGTGATACCTCAAAGAAGTTTACTAGTTCTTATAACAAAATTGTACTGC
TCCGTGTTTTTTTAACTTTTCCACCAGATCAGATTTTCAGCATTCTCATT
AGCCGCTTTAAAGAAAACATTTCTTCGAGTCAGCAAGTTTCGTTTAGCAA
TTAACCTTCAAAATTTTCAAATTTTTATTTTTAGATTCCCAGCATGACAG
CACGCATGATAAGTTACACCCGTCGTTTTTGACGCCGTTTCTACGATTAC
GTTATTTATTCATTCCGTCTCTACAGTTCTGTTTGCGTTCAAACATTACT
ACCTTCATCGTGGCTTGTTTTTAGATGTATATTTAACACTTCACTAACTT
GACTATTATTACGTCAACCATCACTAGTTTTGGTGGCGTGTCCATTCTAA
CGCCCTTACGTTTCCACCTTATGGATTACCTTAGTTGAAAATAAAAAAGA
GTGCAGTGCTAAAACTCATGTTCACTATTGATTTCGATTGGATCATTTCC
CTTGTAAATATCCGACTCTTTTCGCTTACTCGGTGAAATTTTGTTCAGCA
AGTCAGGGAAGAAATTTAGATACTATTTTTAGTGGAAAACCCTGTCAAAA
ATGGCCTCGGTGAAAAGATGAAACATTTTTTTAATATTTGCTCCCAGGAT
TCTTTTGAACGGTTTAGGTTTGACACCTCCAAGGGGTGAAACAATCATGG
TTAAATTACTTAAGTGGCTGTCAAAGTTTTTACGGTCTTTTTCGGAAGAG
ACTCATATGGGCACTAAATATTGGATGGTTTAAAATTGCTCTTCATTTCA
AACTGATGAACGTTTTTTAGTATATATACGACAAATATTTATATTATATT
TAGATAAGAATATTTTATCATTATATATAGAATTGATAAATACTTATACT
GTAAATACAGGCATTTCTTTGTAATCAATTGTTTTTTTAGCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046045-exon-scaffold_105-1575043694:298476..298609 | TCONS_00046045-exon-scaffold_105-1575043694:298476..298609 | Clytia hemisphaerica | exon |
| TCONS_00046045-exon-scaffold_105-1575043694:297166..297925 | TCONS_00046045-exon-scaffold_105-1575043694:297166..297925 | Clytia hemisphaerica | exon |
| TCONS_00046045-exon-scaffold_105-1510915933:298476..298609 | TCONS_00046045-exon-scaffold_105-1510915933:298476..298609 | Clytia hemisphaerica | exon |
| TCONS_00046045-exon-scaffold_105-1510915933:297166..297925 | TCONS_00046045-exon-scaffold_105-1510915933:297166..297925 | Clytia hemisphaerica | exon |
| TCONS_00046045-exon-scaffold_105-1491911889:298476..298609 | TCONS_00046045-exon-scaffold_105-1491911889:298476..298609 | Clytia hemisphaerica | exon |
| TCONS_00046045-exon-scaffold_105-1491911889:297166..297925 | TCONS_00046045-exon-scaffold_105-1491911889:297166..297925 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:297166..298609 - |
Blast
The following BLAST results are available for this feature:
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