TCONS_00046042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046042
Unique NameTCONS_00046042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046042 ID=TCONS_00046042|Name=TCONS_00046042|organism=Clytia hemisphaerica|type=transcript|length=932bp
AAAACGCATAACAATTTAAAATCTTCATGCTAAGGCAGAAAACTATAACA
CAAATACGTTATGGCAAAATACACTTTGAACTATTTTCAACTACCGGGCC
GTGTTGAGCCAATCCGGCTGATGTTTCATGCAGCGGGCGTGGAATTTACG
GACAACCGTTTGTCAGTGGAAGAATGGGCCAGCAGTAAGAGTGACGCCTC
CAGATTTCCATTGCATCGAATGCCTACTCTCGAAGTTGGAGGCAAAATCT
ATTGTCAATCAATGGCCATTGTAAGGTTTGTTGCTAGGGAGCTTGGTTTC
TATGGCAACAATGCGACTGACCAATTAATGATCGACCAGCTATGTGAGAC
GGTTCTTGAAATGTTCATGCAGTTGAGCTCTATTCCTTATGACTTGGAAC
CCGATGTTCGAAAAGCAAAATTGGAGGAATTTTTCGCGTCGGATAAATAC
AATCTTCCGATGGGGTTCTTGACCAAAATGTTGAAAGAAAATCAAAATGG
AGAAGGTTTCTTTGTCGGTGATAAACTCTCGTTGGCAGATTTCCAAATCA
CTGGAATTTTGATTTTGCTCAAAGACATTCGAGACATTAAAGATGAATAC
CCAGAAATCTATGCGTTGTACCAACGAGTTTTGAAccttgagaaaatcaa
aaaatatatggacTCTCAAAAGAAATGATATTTTGGCGATAATACATATA
CGCTTGCTTAATCAGtcaaaaaatctattttggATCAAATATGCCGAACT
CTATTTAtttctttgttaattttatATCGATAATATTTTGTACATATTCA
CCCTTTTACGGCCAATAATAGTTCACCAATAATATGAATGTGAATGTATA
ATTTCAAACTGTCAGTTCCAgaaaaatatccaaattttgaaatatccctg
tctcacagccccggcaGAACTTTTTAACTGAg
Run BLAST on NCBI

protein sequence of TCONS_00046042-protein

>TCONS_00046042-protein ID=TCONS_00046042-protein|Name=TCONS_00046042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MAKYTLNYFQLPGRVEPIRLMFHAAGVEFTDNRLSVEEWASSKSDASRFP
LHRMPTLEVGGKIYCQSMAIVRFVARELGFYGNNATDQLMIDQLCETVLE
MFMQLSSIPYDLEPDVRKAKLEEFFASDKYNLPMGFLTKMLKENQNGEGF
FVGDKLSLADFQITGILILLKDIRDIKDEYPEIYALYQRVLNLEKIKKYM
DSQKK
Run BLAST on NCBI

transcript from alignment at scaffold_105:239346..242086-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046042 ID=TCONS_00046042|Name=TCONS_00046042|organism=Clytia hemisphaerica|type=transcript|length=2741bp|location=Sequence derived from alignment at scaffold_105:239346..242086- (Clytia hemisphaerica)
AAAACGCATAACAATTTAAAATCTTCATGCTAAGGCAGGTAAAGTAATTT
AACTGACCGTTTACCCTTTTCTCGTCGGAAAAAAACTCCTTTCTTCAAAA
ACCGCCATTGTTAAGTCAAAAAGGTCTCTGAGTACAAAAAGCTTTCTCTA
CCTTACAGAACCCCCCCACTAGTACTAATAGGGATAAGGGCAGAATGGGG
ATTACTTCTATATGAATAATCCGTTTTATTCAATAAAGAACGAAATGGCG
CTTTATCAAAAAAGGGGTTGTACACAACAATTCGCATTACTATGAAATGT
ATAAAGAATATTGCATCTGAAAGAGGCTCTAAAAAACGTAGAAAAGCATC
TAGCTGTGCTATTTGTTCTACAAAAATCGATTTGTGTATGAGATGAAAAA
ACCGTTGTCGATATGAAATTTGATCTACATGTTGTTAGAAGGATAGCCTT
GCAAGGTTGTAATTACAAAGTCTTTGATAGGAAAACTGTTTCAGCTCCTT
TTTTTGTGTGAATCATACTGGAATGATTTCATATTATTTCTGCTACTTGC
TTTTCTATAATCTCTTGCCATTCTTATTTCAGAAAACTATAACACAAATA
CGTTATGGCAAAATACACTTTGAACTATTTTCAACTACCGGGCCGTGTTG
AGCCAATCCGGCTGATGTTTCATGCAGCGGGCGTGGAATTTACGGACAAC
CGTTTGTCAGTGGAAGAATGGGCCAGCAGTAAGAGTGACGGTGAGACAAA
AACTTTTCTCGAAATTTATCCGCCCCCCACTTGTTTTGTACTCTGCGATG
TACTAAAAATGAAAACAGCCCTCGAGAAAAATTATTCAAAATTTAAATTT
TGAGATGCCAAAAACTCTTCAAATCTATTTACTATCTAAATCAAAAATTT
TCGAAAGTTCATTTTCGAATTATGAGGACCTCCTTTCCCTTTAAAGTAGT
AGCATAACATTTTAAGTGTTGAATCTAAAATCTTATTTTCTGTCTTGTCT
ACATTTAATCACCTTTTTATCCAACAATTCATCCATTCATCTCAGCCTCC
AGATTTCCATTGCATCGAATGCCTACTCTCGAAGTTGGAGGCAAAATCTA
TTGTCAATCAATGGCCATTGTAAGGTTTGTTGCTAGGGAGCTTGGTTTCT
ATGGCAACAATGCGACTGACCAATTAATGATCGACCAGCTATGTGAGACG
GTTCTTGAAATGTTCATGCAGTTGAGCTCTATTCCTTATGACTTGGAACC
CGATGTTCGAGTAAGTAATTGTACATAATTTTCTTAAAATCAGACCAAGG
GCTTTATTTCCATAGTAGTAGAGGTTTGCGGTGGCAGGAATGCTGGTATT
CATTAACGGATTTGTGCTTCTTATGCCTAATGCGAAACGTTAAAGTTTCA
AACTGATTTTTCCCAGAAATGAGACAAGCAGTGATGTGAGCTCTCTGTTC
AAAAACAGACGAAAATCGACGTCCGACGGGGAGCCTGGAAGCCTGTTGTT
ATTGTTGGACACCCTAGTAATCTGCTGATAGCTTGGCTGCTGATAGCTTG
TGAGATTGTTACGTCTGCCTTGGTAATAAATGTTTACCAAAATTAGTCTT
TTCAAGTGGAAGTTTGATTCAATTCAACGTGGTGTTGATACAGGGGTGTA
TTTGAAAACAATTATCCGCATCTAATACGCAAAAGTTAACTTTCTTTTCA
ATAGAAAGCAAAATTGGAGGAATTTTTCGCGTCGGATAAATACAATCTTC
CGATGGGGTTCTTGACCAAAATGTTGAAAGAAAATCAAAATGGAGAAGGT
TTCTTTGTCGGTGATAAAGTAAGTGGTCCTTTCAAAACTTTCATTTTTAT
ATAGATTGGCACACTAGCCTGAGTTAGGTAAGCGTGGAAAGAAAATTTGT
CGCTCCTAGTTTAGCAAACGGTTACCACTCCCTGACATAATTAATTAACA
GTTTGTTTTTTTCGAAAACATATTTCACAGCTGACAAGGGCAAAGATTGA
ATTTTCTCAAGTCCAAAAATGGTGGCTATAGCATTGCTAGATAAAAAGCT
GATTTTTTTCTTTTTCGTTTTTCATCTTCGTTTTGGAAATTTTAAAACAA
TTTTATACGCATAATATTCCGTTCCGGATTGCCTTTCCAAAAAGTATAAA
ATCGCTATCTAATTCGAAATCTATCAAAAGCAATGCGCAATTGAAAATTT
ACTGTCAGCTAATTTGAAATGTACTTTAATAAAGTTATAGGTATTCCAAA
ATCAAAGTTTCATGCTACATACACAATCATTACAAGTAAACTAATGTATT
TATGCTCTTCCTCCCTCCTTCCTTTTCATTTTAGCTCTCGTTGGCAGATT
TCCAAATCACTGGAATTTTGATTTTGCTCAAAGACATTCGAGACATTAAA
GATGAATACCCAGAAATCTATGCGTTGTACCAACGAGTTTTGAACCTTGA
GAAAATCAAAAAATATATGGACTCTCAAAAGAAATGATATTTTGGCGATA
ATACATATACGCTTGCTTAATCAGTCAAAAAATCTATTTTGGATCAAATA
TGCCGAACTCTATTTATTTCTTTGTTAATTTTATATCGATAATATTTTGT
ACATATTCACCCTTTTACGGCCAATAATAGTTCACCAATAATATGAATGT
GAATGTATAATTTCAAACTGTCAGTTCCAGAAAAATATCCAAATTTTGAA
ATATCCCTGTCTCACAGCCCCGGCAGAACTTTTTAACTGAG

Coding sequence (CDS) from alignment at scaffold_105:239346..242086-

>TCONS_00046042 ID=TCONS_00046042|Name=TCONS_00046042|organism=Clytia hemisphaerica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_105:239346..242086- (Clytia hemisphaerica)
CTCTCGTTGGCAGATTTCCAAATCACTGGAATTTTGATTTTGCTCAAAGA
CATTCGAGACATTAAAGATGAATACCCAGAAATCTATGCGTTGTACCAAC
GAGTTTTGAACCTTGAGAAAATCAAAAAATATATGGACTCTCAAAAGAAA
TGAAAAGCAAAATTGGAGGAATTTTTCGCGTCGGATAAATACAATCTTCC
GATGGGGTTCTTGACCAAAATGTTGAAAGAAAATCAAAATGGAGAAGGTT
TCTTTGTCGGTGATAAACCTCCAGATTTCCATTGCATCGAATGCCTACTC
TCGAAGTTGGAGGCAAAATCTATTGTCAATCAATGGCCATTGTAAGGTTT
GTTGCTAGGGAGCTTGGTTTCTATGGCAACAATGCGACTGACCAATTAAT
GATCGACCAGCTATGTGAGACGGTTCTTGAAATGTTCATGCAGTTGAGCT
CTATTCCTTATGACTTGGAACCCGATGTTCGAATGGCAAAATACACTTTG
AACTATTTTCAACTACCGGGCCGTGTTGAGCCAATCCGGCTGATGTTTCA
TGCAGCGGGCGTGGAATTTACGGACAACCGTTTGTCAGTGGAAGAATGGG
CCAGCAGTAAGAGTGACGCTCTCGTTGGCAGATTTCCAAATCACTGGAAT
TTTGATTTTGCTCAAAGACATTCGAGACATTAAAGATGAATACCCAGAAA
TCTATGCGTTGTACCAACGAGTTTTGAACCTTGAGAAAATCAAAAAATAT
ATGGACTCTCAAAAGAAATGAAAAGCAAAATTGGAGGAATTTTTCGCGTC
GGATAAATACAATCTTCCGATGGGGTTCTTGACCAAAATGTTGAAAGAAA
ATCAAAATGGAGAAGGTTTCTTTGTCGGTGATAAACCTCCAGATTTCCAT
TGCATCGAATGCCTACTCTCGAAGTTGGAGGCAAAATCTATTGTCAATCA
ATGGCCATTGTAAGGTTTGTTGCTAGGGAGCTTGGTTTCTATGGCAACAA
TGCGACTGACCAATTAATGATCGACCAGCTATGTGAGACGGTTCTTGAAA
TGTTCATGCAGTTGAGCTCTATTCCTTATGACTTGGAACCCGATGTTCGA
ATGGCAAAATACACTTTGAACTATTTTCAACTACCGGGCCGTGTTGAGCC
AATCCGGCTGATGTTTCATGCAGCGGGCGTGGAATTTACGGACAACCGTT
TGTCAGTGGAAGAATGGGCCAGCAGTAAGAGTGACGCTCTCGTTGGCAGA
TTTCCAAATCACTGGAATTTTGATTTTGCTCAAAGACATTCGAGACATTA
AAGATGAATACCCAGAAATCTATGCGTTGTACCAACGAGTTTTGAACCTT
GAGAAAATCAAAAAATATATGGACTCTCAAAAGAAATGAAAAGCAAAATT
GGAGGAATTTTTCGCGTCGGATAAATACAATCTTCCGATGGGGTTCTTGA
CCAAAATGTTGAAAGAAAATCAAAATGGAGAAGGTTTCTTTGTCGGTGAT
AAACCTCCAGATTTCCATTGCATCGAATGCCTACTCTCGAAGTTGGAGGC
AAAATCTATTGTCAATCAATGGCCATTGTAAGGTTTGTTGCTAGGGAGCT
TGGTTTCTATGGCAACAATGCGACTGACCAATTAATGATCGACCAGCTAT
GTGAGACGGTTCTTGAAATGTTCATGCAGTTGAGCTCTATTCCTTATGAC
TTGGAACCCGATGTTCGAATGGCAAAATACACTTTGAACTATTTTCAACT
ACCGGGCCGTGTTGAGCCAATCCGGCTGATGTTTCATGCAGCGGGCGTGG
AATTTACGGACAACCGTTTGTCAGTGGAAGAATGGGCCAGCAGTAAGAGT
GACGCTCTCGTTGGCAGATTTCCAAATCACTGGAATTTTGATTTTGCTCA
AAGACATTCGAGACATTAAAGATGAATACCCAGAAATCTATGCGTTGTAC
CAACGAGTTTTGAACCTTGAGAAAATCAAAAAATATATGGACTCTCAAAA
GAAATGAAAAGCAAAATTGGAGGAATTTTTCGCGTCGGATAAATACAATC
TTCCGATGGGGTTCTTGACCAAAATGTTGAAAGAAAATCAAAATGGAGAA
GGTTTCTTTGTCGGTGATAAACCTCCAGATTTCCATTGCATCGAATGCCT
ACTCTCGAAGTTGGAGGCAAAATCTATTGTCAATCAATGGCCATTGTAAG
GTTTGTTGCTAGGGAGCTTGGTTTCTATGGCAACAATGCGACTGACCAAT
TAATGATCGACCAGCTATGTGAGACGGTTCTTGAAATGTTCATGCAGTTG
AGCTCTATTCCTTATGACTTGGAACCCGATGTTCGAATGGCAAAATACAC
TTTGAACTATTTTCAACTACCGGGCCGTGTTGAGCCAATCCGGCTGATGT
TTCATGCAGCGGGCGTGGAATTTACGGACAACCGTTTGTCAGTGGAAGAA
TGGGCCAGCAGTAAGAGTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029414XLOC_029414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046042-exon-scaffold_105-1575043694:242049..242086TCONS_00046042-exon-scaffold_105-1575043694:242049..242086Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1575043694:241347..241504TCONS_00046042-exon-scaffold_105-1575043694:241347..241504Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1575043694:240827..241041TCONS_00046042-exon-scaffold_105-1575043694:240827..241041Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1575043694:240269..240382TCONS_00046042-exon-scaffold_105-1575043694:240269..240382Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1575043694:239346..239752TCONS_00046042-exon-scaffold_105-1575043694:239346..239752Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1510915933:242049..242086TCONS_00046042-exon-scaffold_105-1510915933:242049..242086Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1510915933:241347..241504TCONS_00046042-exon-scaffold_105-1510915933:241347..241504Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1510915933:240827..241041TCONS_00046042-exon-scaffold_105-1510915933:240827..241041Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1510915933:240269..240382TCONS_00046042-exon-scaffold_105-1510915933:240269..240382Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1510915933:239346..239752TCONS_00046042-exon-scaffold_105-1510915933:239346..239752Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1491911889:242049..242086TCONS_00046042-exon-scaffold_105-1491911889:242049..242086Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1491911889:241347..241504TCONS_00046042-exon-scaffold_105-1491911889:241347..241504Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1491911889:240827..241041TCONS_00046042-exon-scaffold_105-1491911889:240827..241041Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1491911889:240269..240382TCONS_00046042-exon-scaffold_105-1491911889:240269..240382Clytia hemisphaericaexon
TCONS_00046042-exon-scaffold_105-1491911889:239346..239752TCONS_00046042-exon-scaffold_105-1491911889:239346..239752Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046042-proteinTCONS_00046042-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:239346..242086 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0645	15.4081	19.946	21.7426	14.0289	8.94185	9.40003	11.8714	8.1874	11.5756	7.90463	8.49692	57.0134	56.9382	2.34055	4.12647	17.0554	23.5601	84.5036	59.6063	38.0974	32.8377	11.1401	10.9463	18.8084	22.1933	2.96054	4.09307	1.63392	1.66471
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004046GST_C
IPR004045Glutathione_S-Trfase_N
IPR010987Glutathione-S-Trfase_C-like
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00046042 vs. Swiss-Prot (Human)
Match: HPGDS (Hematopoietic prostaglandin D synthase OS=Homo sapiens GN=HPGDS PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.822e-17
Identity = 50/162 (30.86%), Postives = 80/162 (49.38%), Query Frame = 1 
Query:   61 MAKYTLNYFQLPGRVEPIRLMFHAAGVEFTDNRLSVEEWASSKSDASRFPLHRMPTLEVGGKIYCQSMAIVRFVARELGFYGNNATDQLMIDQLCETVLEMFMQLSSIPY-DLEPDVRKAKLEEFFASDKYNLPMGFLTKMLKENQNGEGFFVGDKLSLADF 543
            M  Y L YF + GR E IR +F    +++ D+R+   +W   K   S  P  ++P LEV G    QS+AI R++ +     GN   +Q  +D + +T L+ FM  S  P+ + + DV++    E      YN P   L + L     G  + +G+ ++ ADF
Sbjct:    1 MPNYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIK---STLPFGKIPILEVDGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDT-LDDFM--SCFPWAEKKQDVKEQMFNELLT---YNAP--HLMQDLDTYLGGREWLIGNSVTWADF 151
The following BLAST results are available for this feature:
BLAST of TCONS_00046042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HPGDS6.822e-1730.86Hematopoietic prostaglandin D synthase OS=Homo sap... [more]
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