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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046040 ID=TCONS_00046040|Name=TCONS_00046040|organism=Clytia hemisphaerica|type=transcript|length=3064bp
TATcatgggaaaaatcaaaatataatacccgcattctttttcacagTAAC
CTAAGATTTCTTATTGATAAAGGAAGTATAAATACTTACACCCTTCCCAA
ACTTCACCAATTTGTAAAACAATAAGAACAGTTTGAGTCGGTAAAGAAAG
AAGATAAGAGTCATCCTCAACTTCAGTTCCATCCTCTAAATATACTGAAT
CTACGTTCTCCAAATTTAACTTtaattttgctttgtttttgaggtCTTTG
AAGTTGGATGCTGTTAGACCAACACGCTTTTTCCCAAAACAATCTTGAAC
TTTGTATGGCTTATACTCGACCATACCTAACATTCGACGAATAAATTCCA
TAAACAATTAAGAAGAAAGAGGTTCTGAGTATTCTAATTGAGAAAATTCT
AATATAAAGTAAATAGAAGAATGAATTTGTACCAGAAACTCAAGAAAACA
CTAACAAAGACACAAAATAATGACACCCCTCTAGCTGTCTAGTATTCTGT
ATATCGGTGAATTTCCCGCTTGAAAATGAGACGCAAAAATGGCAGAGCTT
CTGGATATAGGTCGGTAGACAAGATTCTTAATGCACCCATATTGAaatgt
aaaatgtaaacaatccAAAAATTCAGACAAGTTTCAAACTTGCAAGTATG
AAGTACAGAAAGAAGATCATTTTGGCAAGATATTAACTTTTCTAAAGCTA
TTTAagaaattaatatttttgaaaggatCAGAAGATTTACCAAACAGGAG
AAGAAAGACATACATCAATTATATAATGTTATCACAattttctaagaaca
ttctCCATTATTCTCAGGTTAGCAGTCCCTCGTTGATTCGAATAACACAA
ACTGCAGCATTGAGTATGAACCATGAGAGCTCACAAACTACATCAACACC
TGCTTCTTCTGCTTTCATTCCTACATTAACACAGCCGCCCTCCACATCAA
AACTTACTCCAAAAGacttaaaaagtaaaattttcacagaatcATTTCAA
AAGGAAGTCAAAAACTTAATGAATGATGGTGATAATCTAACGAATCAGGA
GGCAGACAAGAATAATGACAATGAAGATCGAAAACGAAGATTAAGCGCTA
GCAACTCTGGAAAATCTGTCATTAATGAGGatggaaaaaagttgaaattt
ggaTTAGATAGGATGGAAAGGGTCGAGGACTCAGATTCAGATTATGGTTT
GAAAAGTTTATATGCTAGAGCTGAAAAATGGAAAGTTGATAAAGGGAAGA
AAAAGTTAAAGCATGATAAAGGAAGTAACAGTACCCAATCACCCAAACAG
AAGAATACCAAGCCAAACTATTTCCTTGCTGTCCGTTTGTACAACAAAGA
TATTCACGAAAAAGTCAACAAGGTTCAACACCACATACAAGAAAAGAACA
GCAAAATTAAAGACTGTTTCATTCCTTTGCCAACCCTTCATCTGACACTT
TTTGTCATGTCTctcaaaaatgaagatgaaaaacagACGGCTATTGACGC
AATGTGTTTATCCGCCCCTCAACTGCAAAAATTTGctcaaatgaaaattg
aattagtaTATGAAAAACTAAGTACTTTTTCTGGACAGGTGGTTTTTGTT
GATTTGGTGCAAAACGATAGCTTGCTTGCTTTAGGAGAAATTGTCAAGTT
ATTGAAGATTTCATTTGCTGAAATgaatttgagtttcaaaaatgaaaact
ttacaCCACATTTGACAATCATGAAAATGAGtcgatgttttcaaaaaatg
aggAAAGCTGGTATCAGACGTATTGCTCCACAATTGTATGAAAAGCACAA
GAGCGATTCTTTTGGTAGTGATGTAGTTAAGGACATTTTACTTTGTTCGA
TGACTGACAAAAAGAATGAGGATGGATTTTATAAAGTTGTGGCCAGCATT
GATCTTCAACAGGAAGCTAAATTGAACCTAGGAATGGAGGAAGAAACATT
CAATGCACTGGATCTCACTTCGTATGAAGTCGTTCCCAAGTGGGAAaatg
aagttgaaaattttgagcCAGATTCGTCTTGgaatattttgaatgaaaat
gacATTCATGaagcaaaaactaaaaataaaaacgaagAGGGTGATACTAA
GTAAACAATCTTAAATCGAACATCTTAGAACTTGTCAAAGTTATTGTAAC
GAAGAGTAAaagttattaatttttgagtggTCGGGTTTATATTGCTATTG
GGTGTAATTTCAATATTGATTATAAATTCTGCTTATATTGAGCCTATGAC
ACAAGtcaattatttcttttctttattcTCGAGAAGtcgcattttttgaa
aattttatattttatttttgactcaCTGACAAGAAGTCAATATAAAGTAG
Aatgatgatttattttttaagttcaaaaaatcagatatttacaaaataga
acTAAAGAAAATTCACGTTGAATAACTTTGATATCTATTATCATAAGAGT
TCATAAACGTGGAATGTTTTTCGAATGTTGATCGAATCGAGTTGTCATCC
GAATAATTCGAATAAATAGAATCGTACGAATTCGTAGAATCGATACACTT
TGAAGATGCGTCCattaaagattttgtcttttCTTGTAACTGTCTTACAA
GTTCTAAGTCCTCAGAATAAAATGTTTCGTCAGTTTTTAGCACCTCCGAA
GTTTGGTCGTGTCTAGGTATTGAATTGATTGGATCATACTTCAAGTTTCC
AGTTCTGTTTTGGTCGCCTTCGTAATCAGATTTTGAGCGCGTGGGCGTTT
CAGTCATCCCGTTAGACGATGATAAGAAATTAGAAGGGAAATTGAAGACG
GGTGGAAAATTTGATGTTGGCGGGACAGATGGCGGTGAAATATTGTTGTT
GTTTAGGTTTTCGTATCGGTTTTGAAAATAAACAGGAGATGCGCTATTTG
AAGTATCTGTGTAACCTGAAAGAGCGAGACAATCATGTATTTAaaacgag
tctgctaaatcgcgtgccacgcgtgccagcgtgctatgcgtgccagcgtg
cctacgtgccatgcgtgcctgcgtgccaacgtgccttggcgtgccaacgt
gccagcgtgccaac Run BLAST on NCBI protein sequence of TCONS_00046040-protein >TCONS_00046040-protein ID=TCONS_00046040-protein|Name=TCONS_00046040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MLSQFSKNILHYSQVSSPSLIRITQTAALSMNHESSQTTSTPASSAFIPT
LTQPPSTSKLTPKDLKSKIFTESFQKEVKNLMNDGDNLTNQEADKNNDNE
DRKRRLSASNSGKSVINEDGKKLKFGLDRMERVEDSDSDYGLKSLYARAE
KWKVDKGKKKLKHDKGSNSTQSPKQKNTKPNYFLAVRLYNKDIHEKVNKV
QHHIQEKNSKIKDCFIPLPTLHLTLFVMSLKNEDEKQTAIDAMCLSAPQL
QKFAQMKIELVYEKLSTFSGQVVFVDLVQNDSLLALGEIVKLLKISFAEM
NLSFKNENFTPHLTIMKMSRCFQKMRKAGIRRIAPQLYEKHKSDSFGSDV
VKDILLCSMTDKKNEDGFYKVVASIDLQQEAKLNLGMEEETFNALDLTSY
EVVPKWENEVENFEPDSSWNILNENDIHEAKTKNKNEEGDTK Run BLAST on NCBI transcript from alignment at scaffold_105:218504..221785- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046040 ID=TCONS_00046040|Name=TCONS_00046040|organism=Clytia hemisphaerica|type=transcript|length=3282bp|location=Sequence derived from alignment at scaffold_105:218504..221785- (Clytia hemisphaerica)
TATCATGGGAAAAATCAAAATATAATACCCGCATTCTTTTTCACAGTAAC
CTAAGATTTCTTATTGATAAAGGAAGTATAAATACTTACACCCTTCCCAA
ACTTCACCAATTTGTAAAACAATAAGAACAGTTTGAGTCGGTAAAGAAAG
AAGATAAGAGTCATCCTCAACTTCAGTTCCATCCTCTAAATATACTGAAT
CTACGTTCTCCAAATTTAACTTTAATTTTGCTTTGTTTTTGAGGTCTTTG
AAGTTGGATGCTGTTAGACCAACACGCTTTTTCCCAAAACAATCTTGAAC
TTTGTATGGCTTATACTCGACCATACCTAACATTCGACGAATAAATTCCA
TAAACAATTAAGAAGAAAGAGGTTCTGAGTATTCTAATTGAGAAAATTCT
AATATAAAGTAAATAGAAGAATGAATTTGTACCAGAAACTCAAGAAAACA
CTAACAAAGACACAAAATAATGACACCCCTCTAGCTGTCTAGTATTCTGT
ATATCGGTGAATTTCCCGCTTGAAAATGAGACGCAAAAATGGCAGAGCTT
CTGGATATAGGTCGGTAGACAAGATTCTTAATGCACCCATATTGAAATGT
AAAATGTAAACAATCCAAAAATTCAGACAAGTTTCAAACTTGCAAGTATG
AAGTACAGAAAGAAGATCATTTTGGCAAGATATTAACTTTTCTAAAGCTA
TTTAAGAAATTAATATTTTTGAAAGGATCAGAAGGTAAGGACATGGACAT
GCTAAAACCTATTTTTCTTAATAATGTGAATGCTAAATTATTTTCTCTAA
AAATGAATCTTGCTGTCAGTTGTGGTGCTCTACAGTCTACACTCGTCTAC
ACTCTTAGGAGGCATATGCCAGTTTGGTTTATTATTTATTTGCTATATTG
GCGATATTGTTAAATTAAAAAGTTATTAAAGGTTCTACCTTTTGTCTTTT
AGATTTACCAAACAGGAGAAGAAAGACATACATCAATTATATAATGTTAT
CACAATTTTCTAAGAACATTCTCCATTATTCTCAGGTTAGCAGTCCCTCG
TTGATTCGAATAACACAAACTGCAGCATTGAGTATGAACCATGAGAGCTC
ACAAACTACATCAACACCTGCTTCTTCTGCTTTCATTCCTACATTAACAC
AGCCGCCCTCCACATCAAAACTTACTCCAAAAGACTTAAAAAGTAAAATT
TTCACAGAATCATTTCAAAAGGAAGTCAAAAACTTAATGAATGATGGTGA
TAATCTAACGAATCAGGAGGCAGACAAGAATAATGACAATGAAGATCGAA
AACGAAGATTAAGCGCTAGCAACTCTGGAAAATCTGTCATTAATGAGGAT
GGAAAAAAGTTGAAATTTGGATTAGATAGGATGGAAAGGGTCGAGGACTC
AGATTCAGATTATGGTTTGAAAAGTTTATATGCTAGAGCTGAAAAATGGA
AAGTTGATAAAGGGAAGAAAAAGTTAAAGCATGATAAAGGAAGTAACAGT
ACCCAATCACCCAAACAGAAGAATACCAAGCCAAACTATTTCCTTGCTGT
CCGTTTGTACAACAAAGATATTCACGAAAAAGTCAACAAGGTTCAACACC
ACATACAAGAAAAGAACAGCAAAATTAAAGACTGTTTCATTCCTTTGCCA
ACCCTTCATCTGACACTTTTTGTCATGTCTCTCAAAAATGAAGATGAAAA
ACAGACGGCTATTGACGCAATGTGTTTATCCGCCCCTCAACTGCAAAAAT
TTGCTCAAATGAAAATTGAATTAGTATATGAAAAACTAAGTACTTTTTCT
GGACAGGTGGTTTTTGTTGATTTGGTGCAAAACGATAGCTTGCTTGCTTT
AGGAGAAATTGTCAAGTTATTGAAGATTTCATTTGCTGAAATGAATTTGA
GTTTCAAAAATGAAAACTTTACACCACATTTGACAATCATGAAAATGAGT
CGATGTTTTCAAAAAATGAGGAAAGCTGGTATCAGACGTATTGCTCCACA
ATTGTATGAAAAGCACAAGAGCGATTCTTTTGGTAGTGATGTAGTTAAGG
ACATTTTACTTTGTTCGATGACTGACAAAAAGAATGAGGATGGATTTTAT
AAAGTTGTGGCCAGCATTGATCTTCAACAGGAAGCTAAATTGAACCTAGG
AATGGAGGAAGAAACATTCAATGCACTGGATCTCACTTCGTATGAAGTCG
TTCCCAAGTGGGAAAATGAAGTTGAAAATTTTGAGCCAGATTCGTCTTGG
AATATTTTGAATGAAAATGACATTCATGAAGCAAAAACTAAAAATAAAAA
CGAAGAGGGTGATACTAAGTAAACAATCTTAAATCGAACATCTTAGAACT
TGTCAAAGTTATTGTAACGAAGAGTAAAAGTTATTAATTTTTGAGTGGTC
GGGTTTATATTGCTATTGGGTGTAATTTCAATATTGATTATAAATTCTGC
TTATATTGAGCCTATGACACAAGTCAATTATTTCTTTTCTTTATTCTCGA
GAAGTCGCATTTTTTGAAAATTTTATATTTTATTTTTGACTCACTGACAA
GAAGTCAATATAAAGTAGAATGATGATTTATTTTTTAAGTTCAAAAAATC
AGATATTTACAAAATAGAACTAAAGAAAATTCACGTTGAATAACTTTGAT
ATCTATTATCATAAGAGTTCATAAACGTGGAATGTTTTTCGAATGTTGAT
CGAATCGAGTTGTCATCCGAATAATTCGAATAAATAGAATCGTACGAATT
CGTAGAATCGATACACTTTGAAGATGCGTCCATTAAAGATTTTGTCTTTT
CTTGTAACTGTCTTACAAGTTCTAAGTCCTCAGAATAAAATGTTTCGTCA
GTTTTTAGCACCTCCGAAGTTTGGTCGTGTCTAGGTATTGAATTGATTGG
ATCATACTTCAAGTTTCCAGTTCTGTTTTGGTCGCCTTCGTAATCAGATT
TTGAGCGCGTGGGCGTTTCAGTCATCCCGTTAGACGATGATAAGAAATTA
GAAGGGAAATTGAAGACGGGTGGAAAATTTGATGTTGGCGGGACAGATGG
CGGTGAAATATTGTTGTTGTTTAGGTTTTCGTATCGGTTTTGAAAATAAA
CAGGAGATGCGCTATTTGAAGTATCTGTGTAACCTGAAAGAGCGAGACAA
TCATGTATTTAAAACGAGTCTGCTAAATCGCGTGCCACGCGTGCCAGCGT
GCTATGCGTGCCAGCGTGCCTACGTGCCATGCGTGCCTGCGTGCCAACGT
GCCTTGGCGTGCCAACGTGCCAGCGTGCCAAC Coding sequence (CDS) from alignment at scaffold_105:218504..221785- >TCONS_00046040 ID=TCONS_00046040|Name=TCONS_00046040|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at scaffold_105:218504..221785- (Clytia hemisphaerica)
ATGTTATCACAATTTTCTAAGAACATTCTCCATTATTCTCAGGTTAGCAG
TCCCTCGTTGATTCGAATAACACAAACTGCAGCATTGAGTATGAACCATG
AGAGCTCACAAACTACATCAACACCTGCTTCTTCTGCTTTCATTCCTACA
TTAACACAGCCGCCCTCCACATCAAAACTTACTCCAAAAGACTTAAAAAG
TAAAATTTTCACAGAATCATTTCAAAAGGAAGTCAAAAACTTAATGAATG
ATGGTGATAATCTAACGAATCAGGAGGCAGACAAGAATAATGACAATGAA
GATCGAAAACGAAGATTAAGCGCTAGCAACTCTGGAAAATCTGTCATTAA
TGAGGATGGAAAAAAGTTGAAATTTGGATTAGATAGGATGGAAAGGGTCG
AGGACTCAGATTCAGATTATGGTTTGAAAAGTTTATATGCTAGAGCTGAA
AAATGGAAAGTTGATAAAGGGAAGAAAAAGTTAAAGCATGATAAAGGAAG
TAACAGTACCCAATCACCCAAACAGAAGAATACCAAGCCAAACTATTTCC
TTGCTGTCCGTTTGTACAACAAAGATATTCACGAAAAAGTCAACAAGGTT
CAACACCACATACAAGAAAAGAACAGCAAAATTAAAGACTGTTTCATTCC
TTTGCCAACCCTTCATCTGACACTTTTTGTCATGTCTCTCAAAAATGAAG
ATGAAAAACAGACGGCTATTGACGCAATGTGTTTATCCGCCCCTCAACTG
CAAAAATTTGCTCAAATGAAAATTGAATTAGTATATGAAAAACTAAGTAC
TTTTTCTGGACAGGTGGTTTTTGTTGATTTGGTGCAAAACGATAGCTTGC
TTGCTTTAGGAGAAATTGTCAAGTTATTGAAGATTTCATTTGCTGAAATG
AATTTGAGTTTCAAAAATGAAAACTTTACACCACATTTGACAATCATGAA
AATGAGTCGATGTTTTCAAAAAATGAGGAAAGCTGGTATCAGACGTATTG
CTCCACAATTGTATGAAAAGCACAAGAGCGATTCTTTTGGTAGTGATGTA
GTTAAGGACATTTTACTTTGTTCGATGACTGACAAAAAGAATGAGGATGG
ATTTTATAAAGTTGTGGCCAGCATTGATCTTCAACAGGAAGCTAAATTGA
ACCTAGGAATGGAGGAAGAAACATTCAATGCACTGGATCTCACTTCGTAT
GAAGTCGTTCCCAAGTGGGAAAATGAAGTTGAAAATTTTGAGCCAGATTC
GTCTTGGAATATTTTGAATGAAAATGACATTCATGAAGCAAAAACTAAAA
ATAAAAACGAAGAGGGTGATACTAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046040-exon-scaffold_105-1575043694:221052..221785 | TCONS_00046040-exon-scaffold_105-1575043694:221052..221785 | Clytia hemisphaerica | exon |
| TCONS_00046040-exon-scaffold_105-1575043694:218504..220833 | TCONS_00046040-exon-scaffold_105-1575043694:218504..220833 | Clytia hemisphaerica | exon |
| TCONS_00046040-exon-scaffold_105-1510915933:221052..221785 | TCONS_00046040-exon-scaffold_105-1510915933:221052..221785 | Clytia hemisphaerica | exon |
| TCONS_00046040-exon-scaffold_105-1510915933:218504..220833 | TCONS_00046040-exon-scaffold_105-1510915933:218504..220833 | Clytia hemisphaerica | exon |
| TCONS_00046040-exon-scaffold_105-1491911889:221052..221785 | TCONS_00046040-exon-scaffold_105-1491911889:221052..221785 | Clytia hemisphaerica | exon |
| TCONS_00046040-exon-scaffold_105-1491911889:218504..220833 | TCONS_00046040-exon-scaffold_105-1491911889:218504..220833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:218504..221785 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019510 | Kinase-A_anchor_nucl_local_sig |
| IPR009097 | cNuc_Pdiesterase |
Blast
BLAST of TCONS_00046040 vs. Swiss-Prot (Human)
Match: AKA7G (A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.013e-31 Identity = 72/199 (36.18%), Postives = 117/199 (58.79%), Query Frame = 2
Query: 1310 KPNYFLAVRLYNKDIHEKVNKVQHHIQEKNSKIKDCFIPLPTLHLTLFVMSLKNEDEKQTAIDAMCLSAPQLQKFAQMK-IELVYEKLSTFSGQVVFVDLVQNDSLLALGEIVKLLKISFAEMN-LSFKNENFTPHLTIMKMSRCFQKMRKAGIRRIAPQLYEKHKSDSFGSDVVKDILLCSMTDKKNEDGFYKVVASI 1900
+PNYFL++ + NK+I + + +Q+ I +++ ++ + + H+TL VM L NEDE IDA+ P +++ Q K + L ++ + TF QV FV L + D + +L EI + +F E L ++ +F PHLT MK+S+ +RK G+++I P LYEK S FG +++ I LCSM KK +G+Y +SI
Sbjct: 84 QPNYFLSIPITNKEIIKGIKILQNAIIQQDERLAKAMVSDGSFHITLLVMQLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGNQVGFVKLAEGDHVNSLLEIAETANRTFQEKGILVGESRSFKPHLTFMKLSKS-PWLRKNGVKKIDPDLYEKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESSI 281
The following BLAST results are available for this feature:
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