TCONS_00046036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046036
Unique NameTCONS_00046036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046036 ID=TCONS_00046036|Name=TCONS_00046036|organism=Clytia hemisphaerica|type=transcript|length=1709bp
CAGGATGGGACAGCTTATTATCAAATCAAATGGAAAACATCTTGGGAAAG
AGCTGATTCATTATCACAATTTGGTGAACTGCTGGACGAGTTTTGGGCCA
AAGTCAAGAAAGCCAGTACTGCTAATATGTTCAATAACACATCCGTCAAC
AGGAAAGAGCCAGCGATCGTACCCAGGCCCAAACCCACAACTCAACAATC
AAATAATACACAACAAAAGAACGCCCCACGAACGCCAACACAAAAGAAGA
GGACACCTTCAACATCTCACACGCCACGCACacctcaacaacaacaacaa
caacaacaacaacaacaattctTCCAGCAGTCCCAACAGATTCAGCAAAT
GCAATCCTTCCAACCACCGCCACAACAACCACCACCCGCCACACAAAGTA
TGGGTCAACCGTCTTCTGTCACCCTCATCGACAGTGATGACGacgatgat
gacgtcatcgcaaTCAACCCTCCTCCATCGGGCGCCAATAACATGTCTTT
CAACTCCATGaaTCTAAACAATATCAAGTTAGAAGACTTCGACCAGAAAC
CACAACTGGGTTTTCCACCTCAACCTTTCGCAGGAGGCCTCCCTCCACAA
CAGCAATCTTTCATGAACCCCACCAACGGTCGAGGAGGTGGCGGTGGCAA
TAGAGGACGTGGTAGTGGTGGTACAGGTGGAAGAGGAAGAGGTCGTGGTA
GAGGTTCCGGTCCCTCTCCTGCCAAGCGGAAGTTGGGTATGCCACCTGCT
GGAAGTGCTACTCCTCCTATGAAGATGGAACCGCAAATGGGCGGCTTTGG
TGgcgtgaaaaatgaaaatggtgGATTGGCGCCCGTTACAGCACAATCGA
GTTGGAAAGATCATTTTGAAGTATTGGAAAATTATGTGGATGGTCAAAAA
GTTCACTCTTCGTACAAATGTTTACACTGTAACGCCAAAATCGCGCAATC
ATCGAACTGTTCCCGCCACTTGAAAACACATTTGACGTCAGAGGAAGCAG
AGCACGAGTGTCCGATTTGTCAGAAGAAGTTCGCGCGGTTGGATTATATC
GAACGTCATTTGAAACAGCACGGTAAAGGATCAACGGAGGAGGTCAAGAA
AATGATCAAACTCGTCGCCGCCAGTATGAAGAAATAACATGTAACAACTA
CCAAACTTGCTTAATTTTTTCATACACCAATTAATTCTGAAAccctacaa
tcatggacaaaatatttgagacaaaggggatttccctgcgaaattttaaa
caccacaaatgatttttttggtaaactacagttggaaagcaGAGTTTTAA
CACGAGACTTAAGACTAAGGAGGACCtcaggatctcaggatttaaaagtt
caaatttgctccaaaaaggcttggaatatagcctagaagccaccgaaccc
ctcaaaaatcgaaatattcaatgaaagaaagttgaagtgctaaaatagca
attctcgcccaaactttaaattcagaaaaacgtgaaaattcactaaaatc
tcaatatatttcgacgaTGATTGTAGATTTTTTGATTGCCAGTTCTTCCC
TATATTCATCAAGTTCAATTTATAGCTAGTTCTAGCATGGTCTTATTAGA
ACTTCACAGCTTCACAGGAATTAGCTCAAAATAAAACAGTGGATTATATT
CTCGACTTAATTTGACTAAATCTTTTCTTTGGATCAGTACGGTTATTAGA
GTAAGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_105:178038..183368-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046036 ID=TCONS_00046036|Name=TCONS_00046036|organism=Clytia hemisphaerica|type=transcript|length=5331bp|location=Sequence derived from alignment at scaffold_105:178038..183368- (Clytia hemisphaerica)
CAGGATGGGACAGCTTATTATCAAATCAAATGGAAAACATCTTGGGAAAG
AGCTGATTCATTATCACAATTTGGTGAACTGCTGGACGAGTTTTGGGCCA
AAGTCAAGAAAGCCAGTACTGCTAATATGTTCAATAACACATCCGTCAAC
AGGGTAAGTTGTTTTATGTTTGAATTCGAAACATTTGATATATTTGATTT
AGTCCACAAGTTTGATTATAGTTTGACGTTTATTGCTGGCATGCCTGTAT
AACAAAGGTAAAATAAACCAATTATACTGAATTATAACAATATTTTGTTT
TCATGAAATGCTCATTCGAAATAGTTTCATGAAAAGTGAAAAATCTTAAA
AACGCCAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNACCCTCTACGACAATGAATTTTGAAATTAGCCGTAAATATTGGGTCT
GTGCACTTACTAATGCCTCCTGCAACTCAACCAAATAGAAACAGAAAAGA
ATTCTCGATCAAGTAAGTTACAGTTACTGTAATAAGGTTAGTTCTGACTT
GAATGATTTTTACTTTTTCTCATTTGCAGGATGGGACAGCTTATTATCAA
ATCAAATGGAAAACATCTTGGGAAAGAGCTGATTCATTATCACAATTTGG
TGAACTGCTGGACGAGTTTTGGGCCAAAGTCAAGAAAGCCAGTACTGCTA
ATATGTTCAATAACACATCCGTCAACAGGGTAAGTTGTTTTATGTTTGAA
TTCGAAACATTTGATATATTTGATTTAGTCCACAAGTTTGATTATAGTTT
GACGTTTATTGCTGGCATGCCTGTATAACAAAGGTAAAATAAACCAATTA
TACTGAATTATAACAATATTTTGTTTTCATGAAATGCTCATTCGAAATAG
TTTCATGAAAAGTGAAAAATCTTAAAAACGCCAAGTGATACAGAATTTCT
TTTCTAACCAACTTTCATGTAAAGTGAATGATCTTAAAAAAAAAGCCAAG
TAGCATTTTTTTTCTAACCAACTTTCTTGTTTGCTTTCTTTAGAAAGAGC
CAGCGATCGTACCCAGGCCCAAACCCACAACTCAACAATCAAATAATACA
CAACAAAAGAACGCCCCACGAACGCCAACACAAAAGAAGAGGACACCTTC
AACATCTCACACGCCACGCACACCTCAACAACAACAACAACAACAACAAC
AACAACAATTCTTCCAGCAGTCCCAACAGATTCAGGTACGGTAGTATTAT
GTAGATCATGCTACGATACGCACAGGGCTTCAATCAACAAACAGATCAAA
TGAGAGCTTTAAACTTTCCGCCTATCCATAAATTATTTTGTGAACCCGTT
TTTAATACAATACTCGGTGCTCTGTAATAAGTAGCAAGACTTCCTTCTGG
TAGATAGCTATCTCATATTTAATAATGCTATGACTCATAAGATATTTTCC
TCTTTTTTTCCACACACCAGCAAATGCAATCCTTCCAACCACCGCCACAA
CAACCACCACCCGCCACACAAAGTATGGGTCAACCGTCTTCTGTCACCCT
CATCGACAGTGATGACGACGATGATGACGTCATCGCAATCAACCCTCCTC
CATCGGGCGCCAATAACATGTCTTTCAACTCCATGGTAAGAAATATCTTT
CATTCGTTGTACTCAAGCTTGAAAAACGTCTGCTGATGATCGCACTTCAA
TTTATAAATACACCTGAATACACCGCAAACTTTGTTGAGAAGAAGGTAAT
CAGTGTTTTAGTTAAACTTATTGCGTCCACATTTTAGACACTTTTACCCT
TTTTCTTTCTTTCAGAATCTAAACAATATCAAGTTAGAAGACTTCGACCA
GAAACCACAACTGGGTTTTCCACCTCAACCTTTCGCAGGAGGCCTCCCTC
CACAACAGCAATCTTTCATGAACCCCACCAACGGTCGAGGAGGTGGCGGT
GGCAATAGAGGACGTGGTAGTGGTGGTACAGGTGGAAGAGGAAGAGGTCG
TGGTAGAGGTTCCGGTCCCTCTCCTGCCAAGCGGAAGTTGGGTATGCCAC
CTGCTGGAAGTGCTACTCCTCCTATGAAGATGGAACCGGTGAGTAAAGCC
TCTTTTCTTCTTTCATCATTTTAAGTTCCCTTTTATAGTTAATAAACTAA
ATATAAGCTTGATGTTTCTTTGTTTTCGAAAGAAGTTTTGTTTATGTTTT
CGAGGCAAAATCGATTAGCATTTGAAATTTTAGTCCCTTTATGGCGCACT
TGGACTTTCATTACAAAAAGCACCACCCGTCACAAGCAACAAAACCGATT
ATCTTCTTCTCTCTGTTTCGTTGTAGGGTGCGTCTCCCATCAAACACGAA
AGTTCAAGTGCGTCATCGTCTTCAGTTTCCGGCTCGTGGGAATCGAACTT
TGAAATTATCGAGAAACGAAATTTTGACGGGTCCGTTAGTGAAACAAACT
ATCGGTGAGGTTGTGTGTTTTTACGAAACAGTGATTGGATGAAGGTGATG
AAGAGTGATGTTAGAGGATGAAAAAAAATTTTGGATTTTTTTTTAATCGA
AAAGAGCTGGTTGGTTAACTGTTTTAAAAGAATTCCTGGAGGAAATCCAG
TCTTTGTGTTGAGATATCTTCTACCTTTACACCTTCATTCAACCGCTGTT
TATTTTGATTACAATTGTTTTGATATTACATTCCTTCTTTCCTTCGCGTG
GCGGCTTTAGCAGCAAATGGGCGGCTTTGGTGGCGTGAAAAATGAAAATG
GTGGATTGGCGCCCGTTACAGCACAATCGAGTTGGAAAGATCATTTTGAA
GTATTGGAAAATTATGTGGATGGTCAAAAAGTTCACTCTTCGTACAAGTG
AGTGGATTTCTTCTTCTTCTTCTTCTTCTTTACGTTTTACTTTTCGAAGT
TCTTAGCATAGGAGCTAGGCATTGTTATTTTTTTGAGTTAGTTATTCATT
TAAGTTATTCAATTACAGAGGCAATTGGCTAGTCCAGTTTAGCCGCTCCC
TTTTGAGTGCAGGCTAGTGACGAAGAAAGTTATTATTTTATGTTATTATT
TGTGTTTTCCTTTTTGTTTCTTTCTCGTTTGTGAAGATGCCGACTGTGCG
GAACATCCATCGCCCAGCAATCCAACTGTGGCCGACATCTCAAACTGAAA
CACGGCGTCGGTGGTGGCGGCGTTGGTGGTCTCTAAGCAAGAATGACCCC
ACAAACAGCCTTACCCTTCTCTTAAACTCTCAATCTCTCTAAGAACTTTT
CTTTTCGACAGACCATTCGAAAAAGACGGACTCTCCGATTAAACAAAGCT
TTCTCCTGCCCTTAATAAAATCAAGCTTTTTAAATCTTTTAATTATACTG
TGAAAAAATCTGATCGAAAGGTTTTACCAAAGAAAAGTTCTTCCACCCTC
CCCGTACCCCACAAGCACGCATATTCAACCGCCCTCCCGCCCTTCAAAAA
GGCACCCATTCACGCCCATCTCCCTCTCTTTCCGTTAAGATGTTTACACT
GTAACGCCAAAATCGCGCAATCATCGAACTGTTCCCGCCACTTGAAAACA
CATTTGACGTCAGAGGAAGCAGAGCACGAGTGTCCGATTTGTCAGAAGAA
GTTCGCGCGGTTGGATTATATCGAACGTCATTTGAAACAGCACGGTAAAG
GATCAACGGAGGAGGTCAAGAAAATGATCAAACTCGTCGCCGCCAGTATG
AAGAAATAACATGTAACAACTACCAAACTTGCTTAATTTTTTCATACACC
AATTAATTCTGAAACCCTACAATCATGGACAAAATATTTGAGACAAAGGG
GATTTCCCTGCGAAATTTTAAACACCACAAATGATTTTTTTGGTAAACTA
CAGTTGGAAAGCAGAGTTTTAACACGAGACTTAAGACTAAGGAGGACCTC
AGGATCTCAGGATTTAAAAGTTCAAATTTGCTCCAAAAAGGCTTGGAATA
TAGCCTAGAAGCCACCGAACCCCTCAAAAATCGAAATATTCAATGAAAGA
AAGTTGAAGTGCTAAAATAGCAATTCTCGCCCAAACTTTAAATTCAGAAA
AACGTGAAAATTCACTAAAATCTCAATATATTTCGACGATGATTGTAGAT
TTTTTGATTGCCAGTTCTTCCCTATATTCATCAAGTTCAATTTATAGCTA
GTTCTAGCATGGTCTTATTAGAACTTCACAGCTTCACAGGAATTAGCTCA
AAATAAAACAGTGGATTATATTCTCGACTTAATTTGACTAAATCTTTTCT
TTGGATCAGTACGGTTATTAGAGTAAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029412XLOC_029412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046036-exon-scaffold_105-1575043694:183216..183368TCONS_00046036-exon-scaffold_105-1575043694:183216..183368Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1575043694:181084..181275TCONS_00046036-exon-scaffold_105-1575043694:181084..181275Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1575043694:180684..180848TCONS_00046036-exon-scaffold_105-1575043694:180684..180848Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1575043694:180231..180503TCONS_00046036-exon-scaffold_105-1575043694:180231..180503Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1575043694:179472..179605TCONS_00046036-exon-scaffold_105-1575043694:179472..179605Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1575043694:178038..178829TCONS_00046036-exon-scaffold_105-1575043694:178038..178829Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1510915933:183216..183368TCONS_00046036-exon-scaffold_105-1510915933:183216..183368Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1510915933:181084..181275TCONS_00046036-exon-scaffold_105-1510915933:181084..181275Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1510915933:180684..180848TCONS_00046036-exon-scaffold_105-1510915933:180684..180848Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1510915933:180231..180503TCONS_00046036-exon-scaffold_105-1510915933:180231..180503Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1510915933:179472..179605TCONS_00046036-exon-scaffold_105-1510915933:179472..179605Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1510915933:178038..178829TCONS_00046036-exon-scaffold_105-1510915933:178038..178829Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1491911889:183216..183368TCONS_00046036-exon-scaffold_105-1491911889:183216..183368Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1491911889:181084..181275TCONS_00046036-exon-scaffold_105-1491911889:181084..181275Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1491911889:180684..180848TCONS_00046036-exon-scaffold_105-1491911889:180684..180848Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1491911889:180231..180503TCONS_00046036-exon-scaffold_105-1491911889:180231..180503Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1491911889:179472..179605TCONS_00046036-exon-scaffold_105-1491911889:179472..179605Clytia hemisphaericaexon
TCONS_00046036-exon-scaffold_105-1491911889:178038..178829TCONS_00046036-exon-scaffold_105-1491911889:178038..178829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:178038..183368 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02154	1.65166	0	3.18085	1.78333e-08	6.1793e-07	6.22755e-08	0.0963428	0.0151498	0.00027509	0.157538	0.0556622	0.173236	0.00153817	0.026281	0.0816186	0.00600202	0.107504	0.0362956	0.0355213	0.0360571	0.0161738	0.0177919	0.122002	0.000168833	0.0277622	1.24549e-06	0	2.37358	0.17212
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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