TCONS_00046002 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046002
Unique Name	TCONS_00046002
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	854

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_105:541612..546905+
coding sequence from alignment at scaffold_105:541612..546905+

transcript sequence

>TCONS_00046002 ID=TCONS_00046002|Name=TCONS_00046002|organism=Clytia hemisphaerica|type=transcript|length=854bp
GGGCGGTTCACGTTTGCAGTGATGAGAGATTTTGTACCAAGTTGATACGT
ATACTGAAGGTAAAGATAACAACAATAGTCTCATTGCCATCTTAGTTTAG
TTTCGTTTTCAAAGCACAAcattcgatcaaagatggcggctgtAGTGCGA
ACTTTTCGTCGATGTGTCTCCAACAAAATCATCAAAGCCTCAAGCTGCTA
TTGTCATACTTCAAATGTTCTGAGACCAAATGTATCAATTCAATTTGGGA
AGCAACAAGTATTTCCATCAGTTAATCGCTCCTTCCACTCTTCCTCAGtt
tTGAATGGGGATGTTGTACAATTCAAACTTGCAGATATCGGTGAAGGGAT
TGCAGAAGTGCAAGTCACAGAATGGTACGTAGAAGTTGGCGATAAAGTGG
ATCAGTTTGATCAAATTTGTGAAGTCAAAAGTGACAAAGCATCAGTAACG
ATAACCAGTCGTTTCACTGGAACCGTCACTAAATTGCATTATGATGTAGA
TGATGAAGCAAAAGTTGGAACACCCCTTGTTGACATCGAGGTTGATGGTT
CCGCTGACACGGAGCCACAAGCAGAAGAACAAATTTCACAAGATACTTCA
GCCGCTGAAACTCTCCCACCACCGCCACCTCCATCACAAACCGCTCAAAC
CTCAACACCTGCTCCAACAACACCTGCCAGCACGTCTTCATCAACACTGG
CTACACCAGCTGTTCgcaaaattgcaaaagaaaataatATAAATTTAGCA
GTGGTTCCAGCAACTGGAAAAGACGGTCGAgttttgaaagaagacattct
GAAATTTCTTCAGTACAAAGATTCACATCCAGCAACAACAGCAGGTATCC
TTTA

Run BLAST on NCBI

protein sequence of TCONS_00046002-protein

>TCONS_00046002-protein ID=TCONS_00046002-protein|Name=TCONS_00046002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MAAVVRTFRRCVSNKIIKASSCYCHTSNVLRPNVSIQFGKQQVFPSVNRS
FHSSSVLNGDVVQFKLADIGEGIAEVQVTEWYVEVGDKVDQFDQICEVKS
DKASVTITSRFTGTVTKLHYDVDDEAKVGTPLVDIEVDGSADTEPQAEEQ
ISQDTSAAETLPPPPPPSQTAQTSTPAPTTPASTSSSTLATPAVRKIAKE
NNINLAVVPATGKDGRVLKEDILKFLQYKDSHPATTAGIL

Run BLAST on NCBI

transcript from alignment at scaffold_105:541612..546905+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046002 ID=TCONS_00046002|Name=TCONS_00046002|organism=Clytia hemisphaerica|type=transcript|length=5294bp|location=Sequence derived from alignment at scaffold_105:541612..546905+ (Clytia hemisphaerica)
GGGCGGTTCACGTTTGCAGTGATGAGAGATTTTGTACCAAGTTGATACGT
ATACTGAAGGTAAAGATAACAACAATAGTCTCATTGCCATCTTAGTTTAG
TTTCGTTTTCAAAGCACAAcattcgatcaaagatggcggctgtAGTGCGA
ACTTTTCGTCGATGTGTCTCCAACAAAATCATCAAAGCCTCAAGCTGCTA
TTGTCATACTTCAAATGTTCTGGTAAGATTTCAGTTTATCAATACTTCTT
TTATTCCTGTCTGAAATCTGATCAATTCTTACTCAAAGTTCCCCCTCTAC
ACAGGTTTTCAAACGGCTCTGGCTTCTATTACTATTCTATTTAGTTTCAA
GTTTATTTTCGGTTTTATGAACtatatgtacatttaaaactcCTAAGGGT
ATCTTCCCAGCCAACTGAACTGATGTTGAACTGAATCCTATCAAACCTAT
TTTCTTAATCGAAGCATCAAACTCAATTGAACTTAATCaacgataggtgt
tcgattggcCGTGACTTATTCCATAAAGACGCGATGAAAGAGACATAACC
TGGTCTTATTTagtccagacgtccgcgctcgataggatcgatcatcagaa
cggctcgatgacggatcgatatgtgatcgatggattttacttaacgatcc
ggataggagattttttttggggaaatcgGAATTGTTCGTCCCAAATttcc
aaaatcaggaaattttgccattcagcttctttcaaaatctgaatcttttt
tcaggaaatcggaaATATTTGGAAATGAGGGAGATGCGagagaaaatcct
gaaaatgcgggagatttggcTGAGTTTTTTTCTGTGGGAGAAAACGTTAG
CATGTCTCCCGCCCAATGCAAGAGAGTTGACAGctaccgtgaagtcaggt
aacttgcatcagtggagggaaacttgcataccGCGAGTcgtaaatccgac
agccctgcctaattccgacccccccaaataaaggttatgaaaaaaaattc
tatgtttacaaacactccttctccaagttgaacaataaactattgcaaga
attctcaaaacaaattcaaaacatctaacaagatggctataatgtcaaaa
tgtcaataatgtaattaaaaagtgtgagttgtaaaagtcTGAATGTAATT
AGCTTTTATTGTCatttattgcaaaaaaaaattatgtttcgtataagaag
caattattgttaattATTTAGTTCAACTGGTTATCAAATTtcccagttta
gttgacactttggtattttcgttgcgtcacagcaaaaggtttttttaatt
ttagtttgtatctttgaaagaccacgtcggatttaggcagggctgtcgga
tttaggaccactcacggtagccatcaaatgactgaccaatgaaggaagca
aaattttaaaacaaatgaactacacagttctgcttgcagctctactctat
catttttgttttgatttaagtttgtaccgtgagattgggtaacttgcatc
agtggaggctaacatccatagccctcaaatgaaagacctagcTGGTCAAA
GTAACTTAACAAAGttaagtcaaaacaaaaatggtagactggaGATGCGA
gaggagctgcgtagttgtattttaatgaccagccaggtctttcatttgag
ggctatgcatgttagcctccactgatgcaagttacccaatctcacggtat
tttaatgaccagccaggtctttcatttgagggctatgcatgttagcctcc
actgatgcaagttacccaatctcacggtattttaatgaccagccaggtca
ttctttcgagggctatgcatgttagcctccactgatgcaagttacccgat
ttCTTGGTATGTGATTGCACAGGTGTCGGGTCGGACTTCGACATGCATGT
ACGTCAGTGTTCAATCGAGAAAATTCCTGCAGATTCCTGCCATCTTAAAA
TTTATGATCTtacatgattttttattgttcaacCACGCTGTTTTATTTAC
CTGCAACTCTGTCAGCGAGTAACTTGTCAAAAATACTCAATAAgagattc
taaaatggtagagcAGAGATGCGAGTGGAAAcatttcctttcaaattttg
ctggctttggttggtcaggcatttgatggctatggaattttccctccact
gatgcaagttacccaatctcgaAGTacttcgacaatcgaatttatTGATT
AGTACCATCTGGAATAGAAGCTCCTCACAGTGTCCCAAAGTCTTAAAAAT
ACTACGAAACCATACAATCCAACACttcatagtgtgcaagggggttccag
gtcccacctgaaaattcaggtcccaccttatcctagaattcccaccttca
gcccagactcccagatcccagctaaaaacaaaaaaaatatactaattcga
ggaacaaaacaaaacttctttaCCATAATANCCAgctaaaaccaaaaaaa
atatactaattcgaggaacaaaacaaagtttctttaccgtaatatgaaga
tgtaatatattacatatgtttaactttccatttgcctatgacctacatta
ggggtagaaaccaatcaagtagtcagacggcttagaagtaagtgtgagtc
gttagatataagtttggcatgaaattatggctaatcctcgaataggaagt
tttggggaaaatttgtcccgataactacaatattagtataaataagtgag
gattgcctacaaccataactgcaggtagggagggaggtaaaatatttcat
cctgtcagctttcagttagagcgTCGACTTGAACAGTGAGATGTGATGGC
CATTTTGAACATGACGTCACATGGCTATTAGCAAAGTAGGGCTGAGGGCG
GCCACCCAGCCATTCGAATACTGTATATagcgcttatcaaataaaagtta
aaccgcaatttaacctgtgttaaatccaaaatACATTAATAtgtctatta
tatacatttatgaaatatataaaaaaaatatatcataaaatcataaaatc
tgaaaataagaaattttacttaataactttttccaaaaaacccaaagtcc
cacctaaagaaattaactcccaccttaacttgtttctcccacctaaaacc
tggaaaaccccaaatcccacctgaaaattttcgacccaaatCAGCAAAAC
CCCCCCCACTATTCtggggggggtgcacactatgcaCTTCCGCCATACTT
TTCAATCGTATGTCAAGAAGCTGTCTTAGATGGATAGATTTTTGGATTTC
AGCAGAagcttgtaaaaatatttataaaaaaaggctacaaaaaaaataaa
aaaacagttttttcattgaaaattttcattcttttacaGAGACCAAATGT
ATCAATTCAATTTGGGAAGCAACAAGTATTTCCATCAGTTAATCGCTCCT
TCCACTCTTCCTCAGGTAATAAaacttctgttttttttttctcatttaac
AAACAGCTATTCTTTTATCAGTATCGAAGATCCCATGGCATTCTGAAGAC
AACTCAAGAATACTCAATACTTACAATAGTTTCCGACAAATCAACTTTGA
AATTACAGCTACAGTAAAGTGTTGAACATTTTTAAGATCGtacacattgt
ttttataagcagCTCCAATTTTTAGGTCAAGGCTTAGAATTGTAGCTCAT
TTCCTGAAAAAATTactttgaccacccctgattTTATACTATATTGGTTT
TTGCTTATTGGGTCAATGGCTATCGTTTGCCATGTTCAGAttatttaaaa
agcttttactttacgagatcTAATCTCGGGGCTCGAGCCTTAGCAACGTG
GTTgcttatgtaaaaaaaatttgtaccaAGCTAacatttttcattgtttc
agtttTGAATGGGGATGTTGTACAATTCAAACTTGCAGATATCGGTGAAG
GGATTGCAGAAGTGCAAGTCACAGAATGGTAGGAAATATTGGAAACAAtg
cttaaaaaaaaatcatttttctctcAACACAATTATTCTAAAagctgaaa
agaaaatttgaagcaACAATCAGTGAAACAGATAAACAAAACGACTGCTT
TTATGAAACTTGATATGACTTCATCCGCAAGTCACTGGAAAtgcttttgt
ttgttttaaaaaagcCCGGACACTGAAAGTACTAGCCTGTTTATGGAGAG
ATTGTGTATGTTTCATTATTTTGTTTCTTTAGGTACGTAGAAGTTGGCGA
TAAAGTGGATCAGTTTGATCAAATTTGTGAAGTCAAAAGTGACAAAGTAT
GTATTGGTATAAACCCATTCAACTTGATCTCTGAAAATATTTAACCTTTT
TGTGTCTGCTGAAANAACCCATAAACCCATTCAACTTgatttctgaaaat
atttaaccTTTGTCTGCTGAAAGATAGAGGGTGAAACCAAGCTGTCTTGT
TGTAATGTTTTTCCTACTATGTTTCATGATATGATATGATGATTTGTGTA
TGTAAGATATTCCTCAAAgctaccaaaaatatttttaaaaactcttCTAA
CAGGCATCAGTAACGATAACCAGTCGTTTCACTGGAACCGTCACTAAATT
GCATTATGATGTAGATGATGAAGCAAAAGTTGGAACACCCCTTGTTGACA
TCGAGGTTGATGGTTCCGCTGGTAAGAGCAAACGAGACTCAGAATTCAta
taacatttttcaaataaagcaaagtaaaatttgaatttttgttagGGATG
GAATTCACCTCGTTGAAACATTAGGTGCCGTAAGATCCTCAGTATAATgt
tgcttcttttttaaattcgcTCCAATAAAATACTAAAACAAGCTAAAAAT
TACTTACTTTGAGGTAGAACATTTCAAATATGATCGAGTTTGTTCTTCTT
TCACAGACACGGAGCCACAAGCAGAAGAACAAATTTCACAAGATACTTCA
GCCGCTGAAACTCTCCCACCACCGCCACCTCCATCACAAACCGCTCAAAC
CTCAACACCTGCTCCAACAACACCTGCCAGCACGTCTTCATCAACACTGG
CTACACCAGCTGTTCgcaaaattgcaaaagaaaataatgtaaaTTTCGCA
TTCAGTTAGTGTTAATAAGTGGATAATTGGAGCGCTAAGGCTACTACAGT
GCAGGTTTTTTTGTCTTATCCAATACAAATATCTTAGCATAATCATAAAG
CTATATTATTCTCTCTTCCTACCTATAGATAAATTTAGCAGTGGTTCCAG
CAACTGGAAAAGACGGTCGAgttttgaaagaagacattctGAAATTTCTT
CAGTACAAAGATTCACATCCAGCAACAACAGCAGGTATCCTTTA

Coding sequence (CDS) from alignment at scaffold_105:541612..546905+

>TCONS_00046002 ID=TCONS_00046002|Name=TCONS_00046002|organism=Clytia hemisphaerica|type=CDS|length=5040bp|location=Sequence derived from alignment at scaffold_105:541612..546905+ (Clytia hemisphaerica)
atggcggctgtAGTGCGAACTTTTCGTCGATGTGTCTCCAACAAAATCAT
CAAAGCCTCAAGCTGCTATTGTCATACTTCAAATGTTCTGAGACCAAATG
TATCAATTCAATTTGGGAAGCAACAAGTATTTCCATCAGTTAATCGCTCC
TTCCACTCTTCCTCAGtttTGAATGGGGATGTTGTACAATTCAAACTTGC
AGATATCGGTGAAGGGATTGCAGAAGTGCAAGTCACAGAATGGTACGTAG
AAGTTGGCGATAAAGTGGATCAGTTTGATCAAATTTGTGAAGTCAAAAGT
GACAAAGCATCAGTAACGATAACCAGTCGTTTCACTGGAACCGTCACTAA
ATTGCATTATGATGTAGATGATGAAGCAAAAGTTGGAACACCCCTTGTTG
ACATCGAGGTTGATGGTTCCGCTGACACGGAGCCACAAGCAGAAGAACAA
ATTTCACAAGATACTTCAGCCGCTGAAACTCTCCCACCACCGCCACCTCC
ATCACAAACCGCTCAAACCTCAACACCTGCTCCAACAACACCTGCCAGCA
CGTCTTCATCAACACTGGCTACACCAGCTGTTCgcaaaattgcaaaagaa
aataatATAAATTTAGCAGTGGTTCCAGCAACTGGAAAAGACGGTCGAgt
tttgaaagaagacattctGAAATTTCTTCAGTACAAAGATTCACATCCAG
CAACAACAGCAGGTATCCTTatggcggctgtAGTGCGAACTTTTCGTCGA
TGTGTCTCCAACAAAATCATCAAAGCCTCAAGCTGCTATTGTCATACTTC
AAATGTTCTGAGACCAAATGTATCAATTCAATTTGGGAAGCAACAAGTAT
TTCCATCAGTTAATCGCTCCTTCCACTCTTCCTCAGtttTGAATGGGGAT
GTTGTACAATTCAAACTTGCAGATATCGGTGAAGGGATTGCAGAAGTGCA
AGTCACAGAATGGTACGTAGAAGTTGGCGATAAAGTGGATCAGTTTGATC
AAATTTGTGAAGTCAAAAGTGACAAAGCATCAGTAACGATAACCAGTCGT
TTCACTGGAACCGTCACTAAATTGCATTATGATGTAGATGATGAAGCAAA
AGTTGGAACACCCCTTGTTGACATCGAGGTTGATGGTTCCGCTGACACGG
AGCCACAAGCAGAAGAACAAATTTCACAAGATACTTCAGCCGCTGAAACT
CTCCCACCACCGCCACCTCCATCACAAACCGCTCAAACCTCAACACCTGC
TCCAACAACACCTGCCAGCACGTCTTCATCAACACTGGCTACACCAGCTG
TTCgcaaaattgcaaaagaaaataatATAAATTTAGCAGTGGTTCCAGCA
ACTGGAAAAGACGGTCGAgttttgaaagaagacattctGAAATTTCTTCA
GTACAAAGATTCACATCCAGCAACAACAGCAGGTATCCTTatggcggctg
tAGTGCGAACTTTTCGTCGATGTGTCTCCAACAAAATCATCAAAGCCTCA
AGCTGCTATTGTCATACTTCAAATGTTCTGAGACCAAATGTATCAATTCA
ATTTGGGAAGCAACAAGTATTTCCATCAGTTAATCGCTCCTTCCACTCTT
CCTCAGtttTGAATGGGGATGTTGTACAATTCAAACTTGCAGATATCGGT
GAAGGGATTGCAGAAGTGCAAGTCACAGAATGGTACGTAGAAGTTGGCGA
TAAAGTGGATCAGTTTGATCAAATTTGTGAAGTCAAAAGTGACAAAGCAT
CAGTAACGATAACCAGTCGTTTCACTGGAACCGTCACTAAATTGCATTAT
GATGTAGATGATGAAGCAAAAGTTGGAACACCCCTTGTTGACATCGAGGT
TGATGGTTCCGCTGACACGGAGCCACAAGCAGAAGAACAAATTTCACAAG
ATACTTCAGCCGCTGAAACTCTCCCACCACCGCCACCTCCATCACAAACC
GCTCAAACCTCAACACCTGCTCCAACAACACCTGCCAGCACGTCTTCATC
AACACTGGCTACACCAGCTGTTCgcaaaattgcaaaagaaaataatATAA
ATTTAGCAGTGGTTCCAGCAACTGGAAAAGACGGTCGAgttttgaaagaa
gacattctGAAATTTCTTCAGTACAAAGATTCACATCCAGCAACAACAGC
AGGTATCCTTatggcggctgtAGTGCGAACTTTTCGTCGATGTGTCTCCA
ACAAAATCATCAAAGCCTCAAGCTGCTATTGTCATACTTCAAATGTTCTG
AGACCAAATGTATCAATTCAATTTGGGAAGCAACAAGTATTTCCATCAGT
TAATCGCTCCTTCCACTCTTCCTCAGtttTGAATGGGGATGTTGTACAAT
TCAAACTTGCAGATATCGGTGAAGGGATTGCAGAAGTGCAAGTCACAGAA
TGGTACGTAGAAGTTGGCGATAAAGTGGATCAGTTTGATCAAATTTGTGA
AGTCAAAAGTGACAAAGCATCAGTAACGATAACCAGTCGTTTCACTGGAA
CCGTCACTAAATTGCATTATGATGTAGATGATGAAGCAAAAGTTGGAACA
CCCCTTGTTGACATCGAGGTTGATGGTTCCGCTGACACGGAGCCACAAGC
AGAAGAACAAATTTCACAAGATACTTCAGCCGCTGAAACTCTCCCACCAC
CGCCACCTCCATCACAAACCGCTCAAACCTCAACACCTGCTCCAACAACA
CCTGCCAGCACGTCTTCATCAACACTGGCTACACCAGCTGTTCgcaaaat
tgcaaaagaaaataatATAAATTTAGCAGTGGTTCCAGCAACTGGAAAAG
ACGGTCGAgttttgaaagaagacattctGAAATTTCTTCAGTACAAAGAT
TCACATCCAGCAACAACAGCAGGTATCCTTatggcggctgtAGTGCGAAC
TTTTCGTCGATGTGTCTCCAACAAAATCATCAAAGCCTCAAGCTGCTATT
GTCATACTTCAAATGTTCTGAGACCAAATGTATCAATTCAATTTGGGAAG
CAACAAGTATTTCCATCAGTTAATCGCTCCTTCCACTCTTCCTCAGtttT
GAATGGGGATGTTGTACAATTCAAACTTGCAGATATCGGTGAAGGGATTG
CAGAAGTGCAAGTCACAGAATGGTACGTAGAAGTTGGCGATAAAGTGGAT
CAGTTTGATCAAATTTGTGAAGTCAAAAGTGACAAAGCATCAGTAACGAT
AACCAGTCGTTTCACTGGAACCGTCACTAAATTGCATTATGATGTAGATG
ATGAAGCAAAAGTTGGAACACCCCTTGTTGACATCGAGGTTGATGGTTCC
GCTGACACGGAGCCACAAGCAGAAGAACAAATTTCACAAGATACTTCAGC
CGCTGAAACTCTCCCACCACCGCCACCTCCATCACAAACCGCTCAAACCT
CAACACCTGCTCCAACAACACCTGCCAGCACGTCTTCATCAACACTGGCT
ACACCAGCTGTTCgcaaaattgcaaaagaaaataatATAAATTTAGCAGT
GGTTCCAGCAACTGGAAAAGACGGTCGAgttttgaaagaagacattctGA
AATTTCTTCAGTACAAAGATTCACATCCAGCAACAACAGCAGGTATCCTT
atggcggctgtAGTGCGAACTTTTCGTCGATGTGTCTCCAACAAAATCAT
CAAAGCCTCAAGCTGCTATTGTCATACTTCAAATGTTCTGAGACCAAATG
TATCAATTCAATTTGGGAAGCAACAAGTATTTCCATCAGTTAATCGCTCC
TTCCACTCTTCCTCAGtttTGAATGGGGATGTTGTACAATTCAAACTTGC
AGATATCGGTGAAGGGATTGCAGAAGTGCAAGTCACAGAATGGTACGTAG
AAGTTGGCGATAAAGTGGATCAGTTTGATCAAATTTGTGAAGTCAAAAGT
GACAAAGCATCAGTAACGATAACCAGTCGTTTCACTGGAACCGTCACTAA
ATTGCATTATGATGTAGATGATGAAGCAAAAGTTGGAACACCCCTTGTTG
ACATCGAGGTTGATGGTTCCGCTGACACGGAGCCACAAGCAGAAGAACAA
ATTTCACAAGATACTTCAGCCGCTGAAACTCTCCCACCACCGCCACCTCC
ATCACAAACCGCTCAAACCTCAACACCTGCTCCAACAACACCTGCCAGCA
CGTCTTCATCAACACTGGCTACACCAGCTGTTCgcaaaattgcaaaagaa
aataatATAAATTTAGCAGTGGTTCCAGCAACTGGAAAAGACGGTCGAgt
tttgaaagaagacattctGAAATTTCTTCAGTACAAAGATTCACATCCAG
CAACAACAGCAGGTATCCTTatggcggctgtAGTGCGAACTTTTCGTCGA
TGTGTCTCCAACAAAATCATCAAAGCCTCAAGCTGCTATTGTCATACTTC
AAATGTTCTGAGACCAAATGTATCAATTCAATTTGGGAAGCAACAAGTAT
TTCCATCAGTTAATCGCTCCTTCCACTCTTCCTCAGtttTGAATGGGGAT
GTTGTACAATTCAAACTTGCAGATATCGGTGAAGGGATTGCAGAAGTGCA
AGTCACAGAATGGTACGTAGAAGTTGGCGATAAAGTGGATCAGTTTGATC
AAATTTGTGAAGTCAAAAGTGACAAAGCATCAGTAACGATAACCAGTCGT
TTCACTGGAACCGTCACTAAATTGCATTATGATGTAGATGATGAAGCAAA
AGTTGGAACACCCCTTGTTGACATCGAGGTTGATGGTTCCGCTGACACGG
AGCCACAAGCAGAAGAACAAATTTCACAAGATACTTCAGCCGCTGAAACT
CTCCCACCACCGCCACCTCCATCACAAACCGCTCAAACCTCAACACCTGC
TCCAACAACACCTGCCAGCACGTCTTCATCAACACTGGCTACACCAGCTG
TTCgcaaaattgcaaaagaaaataatATAAATTTAGCAGTGGTTCCAGCA
ACTGGAAAAGACGGTCGAgttttgaaagaagacattctGAAATTTCTTCA
GTACAAAGATTCACATCCAGCAACAACAGCAGGTATCCTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029400	XLOC_029400	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046002-protein	TCONS_00046002-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_105	supercontig	scaffold_105:541612..546905 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.2756	63.5608	125.242	129.415	67.7971	54.9224	52.4718	58.4582	33.6972	57.9874	34.6063	29.6723	24.5463	21.7685	26.8293	40.3222	31.4641	37.7939	11.1094	11.9923	18.8793	20.7001	34.1822	34.9755	36.9098	33.6263	24.5875	18.9156	29.3653	31.9712

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR004167	E3-bd
IPR000089	Biotin_lipoyl
IPR003016	2-oxoA_DH_lipoyl-BS
IPR011053	Single_hybrid_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0016746	transferase activity, transferring acyl groups

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016746	transferase activity, transferring acyl groups

Blast

[Close]

BLAST of TCONS_00046002 vs. Swiss-Prot (Human)
Match: ODB2 (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DBT PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.941e-45
Identity = 108/236 (45.76%), Postives = 134/236 (56.78%), Query Frame = 1

Query:  133 MAAV--VRTFRRCVSNKIIKASSCYCHTSNVLRPNVSIQFGKQQVFPSVNRS-----FHSSSVLNGDVVQFKLADIGEGIAEVQVTEWYVEVGDKVDQFDQICEVKSDKASVTITSRFTGTVTKLHYDVDDEAKVGTPLVDIEVDGSADTEPQAEE--QISQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRKIAKENNINLAVVPATGKDGRVLKEDILKFLQ 813
            MAAV  +RT+ R     I       C   +VL+PN    FG    +PS   S       +++ L G VVQFKL+DIGEGI EV V EWYV+ GD V QFD ICEV+SDKASVTITSR+ G + KL+Y++DD A VG PLVDIE +   D+E    E   +S D                        T        TLATPAVR++A ENNI L+ V  +GKDGR+LKEDIL +L+
Sbjct:    1 MAAVRMLRTWSRNAGKLICVRYFQTCGNVHVLKPNYVCFFG----YPSFKYSHPHHFLKTTAALRGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALKDSEEDVVETPAVSHD----------------------EHTHQEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLE 210

The following BLAST results are available for this feature:

BLAST of TCONS_00046002 vs. Swiss-Prot (Human)

BLAST of TCONS_00046002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ODB2	1.941e-45	45.76	Lipoamide acyltransferase component of branched-ch...	[more]

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TCONS_00046002 (transcript) - C. hemisphaerica