|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045994 ID=TCONS_00045994|Name=TCONS_00045994|organism=Clytia hemisphaerica|type=transcript|length=1436bp
TTCAAGCGTAATATAATATTGATTCCAATACTGTCGTATTTAGAGCACGG
AACTATTTTCTTTTCAGCAGAATGTCTATTTCTTTATAAATGGATGATAG
AAAGGAGAAGGAAGGAGGAAAGACATGTGAGGGATATGAGGATTATTTGA
ACAGTGGTGATATGGAGATTACACAATGTGTAAGAGAAGCACATCTCATG
GTGGACGAAGTCATCCAAAAATCATCCAATTCTCTTCTCTATAACAAAGA
CGCAAAACTTCCATACATCAAATGGTTGACCATTCAGGAATTTACCATTC
AAAATGGCGTCTTGAAAATCGACGAGTTTATAAAGACTTGGGATCGCAAA
CCAAATTGGTTGTATTGTGTAGACTTTTTGTGTCAAGAACACCATGAATA
CAGCGAGCGCTATCGATATCGCGTGAAATGGAGCATTCCTACTCGCAGAA
AACCGATCCCTCGAGCGACTGCTTCCGTTTATTTCACATTTGATGTCAGC
AATGTCAAACCTTTGGATTCGTTGGTTGAAGTGTATTACATTTTCGAAAG
CAGTAAACTCGTTCATAGaGCGGACTCATCTCGGTTCCGTGAAAAATGGC
TGTCTGACGTCATCGATGCTAAAGTGCTACTGATGGATGCTATCACTTTT
TAAGTTAATCACATCTTTTTTGATTCACTGTAAATATAATTTGTTGTTAA
TATATCAATTTTCGTGTAAGCTGTAATATGTGAATGATCAATGACTAAAT
GAAATCATCgaggaaatttttcttttaaaaatgcaTACTTTAttccatag
tataagaaagccgcggctggaatgagttcagttgaatttctgttgttcta
tGTCGTAAGAATGAATTTTTTTGTGGTTCAGTGACAATTTCCATTGTCAA
TTTAATTTGACTTTTAACAAAGTCCCTCGTAAGACGTAATTTTGCTCATA
AACACAAATCTCTTGATAATTCACGCATTCATAAGATCGAAAGATATTTC
CTTGGGCTAATAATTTAATGGTAAAAGGAATAACCAGAAGCGTCGTGTTT
TTTATTTAAAAACTGTATATTCGACCTACACAACAAGAGGTCATCTTCAG
AGTGTAAAAATCTATCAACAAGAAAAAATTTTAAAAACATTTTAAGAACA
AATCTATAATTGGCTAATAAAATTACAATAAAAACAGTTTTGAAAAAAGA
CAAAACGAAAAGCTAAAAAACAGTTAAAAATAAATACCTCATAAGATCAA
AGTAAAAGAAAAGACTCTTGGTTTAAAAGTATTTGAACGATCAGAATGTC
Agtgctttaagaacttgaagaaaattgagtgcctcgaaatgccttccaga
ttattctgaaaaattcttactggtattagtaaataatcattcaagcagta
ttctgtgaaaatttcattcaaaaagcaaGAGTATTG Run BLAST on NCBI protein sequence of TCONS_00045994-protein >TCONS_00045994-protein ID=TCONS_00045994-protein|Name=TCONS_00045994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MDDRKEKEGGKTCEGYEDYLNSGDMEITQCVREAHLMVDEVIQKSSNSLL
YNKDAKLPYIKWLTIQEFTIQNGVLKIDEFIKTWDRKPNWLYCVDFLCQE
HHEYSERYRYRVKWSIPTRRKPIPRATASVYFTFDVSNVKPLDSLVEVYY
IFESSKLVHRADSSRFREKWLSDVIDAKVLLMDAITF Run BLAST on NCBI transcript from alignment at scaffold_105:479523..483288+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045994 ID=TCONS_00045994|Name=TCONS_00045994|organism=Clytia hemisphaerica|type=transcript|length=3766bp|location=Sequence derived from alignment at scaffold_105:479523..483288+ (Clytia hemisphaerica)
TTCAAGCGTAATATAATATTGATTCCAATACTGTCGTATTTAGAGCACGG
AACTATTTTCTTTTCAGCAGAATGTCTATTTCTTTATAAATGGATGATAG
AAAGGAGAAGGAAGGAGGAAAGACATGTGAGGGATATGAGGATTATTTGA
ACAGTGGTGATATGGAGATTACACAATGTGTAAGAGAAGCACATCTCATG
GTGGACGAAGTCATCCAAAAATCATCCAATTCTCTTCTCTATAACAAAGA
CGCAAAACTTCCATACATCAAATGGTTGACCATTCAGGAATTTACCATTC
AAAATGGCGTCTTGAAAATCGACGAGTTTATAAAGGTGAACAAAGTAGCC
TAATGAAATTAAATAACCTTATAAAATCAGTGGTGAAATTCTTGGAAGAG
TCGCAATTATTGATTCCTAATTCTTCATTGAATAAAACCATCTTATTCTG
GTGGCAGGCACTataatctttgaaaaacaactGATTATATATTTATGTTT
TGCAGTCAATAGCAAGAGTTGGGGAAGCCTTGTCACCAATACGATTTTTA
ACAACCCTGTATATCCCACCTTgagaagaccgtgtaactaataatgtttt
tcattatttctgTTTTTGTTAACAGACTTGGGATCGCAAACCAAATTGGT
TGTATTGTGTAGACTTTTTGTGTCAAGAACACCATGAATACAGCGAGCGC
TATCGATATCGCGTGAAATGGAGCATTCCTACTCGCAGAAAACCGATCCC
TCGAGCGACTGCTTCCGTTTATTTCACATTTGATGTCAGCAATGTCAAAC
CTTTGGTATGTTCACTTTTTCTCTTAGTTTTTTAAAGGTCTgaggttaaa
gaaaaattcttgtaccgggtgcaccaaaaaaaagtatacaactttgtcga
gatattgtgagcttcaggatttaaactttttgttcattctttttttatcg
catagggatgctctaacttgaattttgagctatcatacattaggtttgaa
aaagtaattcgaaaattattttaaaaaaactgatttttttaatgtcgaaa
tttcaaagaaatcatcaaaaaacagcgagcaaacttttctcttgacactt
accttctttacacataaaaataccaaaagatgcaactgtgttcatcaaaa
cttgttacaaatttaagaatatggtaaaacaagatattcccatgtgggat
aacattttcagaaaagctgaaaaattttggaaatctctaagagaggtttt
gattttatgtgtgtgtgctatgtgagaaattttctgaaaaaatagatcat
TATTCCTCGACTAGTttctcaaagaacttgggtttGCATTGAATTTGCTg
gttttggaaatttttatgacgtgcaaataagatggagaaactGTTGGCAA
GATATGAGATAAGAGaaaaaagaaccaaaaaaacaatgaaattatgtttt
tgttatttttgtcttatttatagcgtgattgctgtttttaatgatttttt
aaaatttcgaccttgaaaaaaagtcagtattttggaaataactttcgaac
tactttttcaaatttaatgtataatagctcaaaattcaagttagagcatc
ctctatacaataaaaaaagaattaacaaaaatttaaatcctgaagctcac
catatctcgacaaacttgtatacttttttttggtgcacccggtatattaa
GTGAAAATACTTGACTTGAAACACCTTACATTGGAGATAGCCCTGTCTCA
GAAGCCTGGTTTTTTATCATTAAACTTAAGGTATTAAGCCTGGAAAAGAT
GTGTCTCGTTATTTTTGATAGGCGGAGATTTcaattggaatgtttacaat
tGAAAATCCAAAGACTAAAAAATATCATGTTAGGTACCTCTGGCAATCGT
AAAACCTTTCCATTGCAAGACAGAATCAAAATTATGCTTTGTTTCCCTGT
GAAGATTTTTCGCGTCAATTTTTACTTTGGATCAATACTCATTGGTTTCA
GTCCTAGCGGGTCTTTAGTCTGTAGCAAGGGTCTTTAGTCTGTAGCAAGG
GTCTTTGAAAAAGTTTGCTGAAAATTTCGAGGCTCTTCTGATGTCCGTAT
AAAGCTTGTTCCTTCTCAAATTATAGATGTTTTTCGTTCTTCCATAGGAT
TCGTTGGTTGAAGTGTATTACATTTTCGAAAGCAGTAAACTCGTTCATAG
GTATGATGTTTGATTCTCTCAGTCATTTTATTTACCCCACCATGTTTATT
CTTCCTTCTTCTGTCAATAAAGTCCTTTCTCGAGATGCAGAATAACTTTG
TTGATCTTGTTTTCAAATATTCTCAGAAAGATTGCTTAAACATAAAAAGA
CGTAAAGTTGATGTTTGGTAACTTTTGTGCGTTTGTTTTCGAAACTCTTT
CGAAACTCTTTCGAATCACTAGGCGAagtaaaataccaaaataacGCCCC
AGTTCGTAAAGGTCGGTCTCCATTTACGTGCGCTGCGATTGCACCGTTTa
gtttcaatcatttttgcttagaaaaatgATTACGTCATGAAAATGTAGTG
CGCGTTCGAAAAAATACATTAAGATACAAACTTTTTTAACCGTTACAtta
gatcgcgccaatggaattgcatcatttttcttttgatcgatagcgtggaa
gctttgctagATAAAGTACGATCGCAGCGCGTGCAAGTGAAGACCGGTCT
TAACACCTAGGTTCTTCACAATTTGGtagcttttttcaaactgaagTTCG
TGGTTTATTTCCTTTGCAATGGAGGAAGATAGGTAGTTTGGTCAAGATTG
AGGAACAGGGTATTATAAAAATAGTAATCATTTGGAAATGCTCTAAAGGG
TTAAATTATCAATGTTCAAATTGATCATccaaatttatttcttttcagaG
CGGACTCATCTCGGTTCCGTGAAAAATGGCTGTCTGACGTCATCGATGCT
AAAGTGCTACTGATGGATGCTATCACTTTTTAAGTTAATCACATCTTTTT
TGATTCACTGTAAATATAATTTGTTGTTAATATATCAATTTTCGTGTAAG
CTGTAATATGTGAATGATCAATGACTAAATGAAATCATCgaggaaatttt
tcttttaaaaatgcaTACTTTAttccatagtataagaaagccgcggctgg
aatgagttcagttgaatttctgttgttctatGTCGTAAGAATGAATTTTT
TTGTGGTTCAGTGACAATTTCCATTGTCAATTTAATTTGACTTTTAACAA
AGTCCCTCGTAAGACGTAATTTTGCTCATAAACACAAATCTCTTGATAAT
TCACGCATTCATAAGATCGAAAGATATTTCCTTGGGCTAATAATTTAATG
GTAAAAGGAATAACCAGAAGCGTCGTGTTTTTTATTTAAAAACTGTATAT
TCGACCTACACAACAAGAGGTCATCTTCAGAGTGTAAAAATCTATCAACA
AGAAAAAATTTTAAAAACATTTTAAGAACAAATCTATAATTGGCTAATAA
AATTACAATAAAAACAGTTTTGAAAAAAGACAAAACGAAAAGCTAAAAAA
CAGTTAAAAATAAATACCTCATAAGATCAAAGTAAAAGAAAAGACTCTTG
GTTTAAAAGTATTTGAACGATCAGAATGTCAgtgctttaagaacttgaag
aaaattgagtgcctcgaaatgccttccagattattctgaaaaattcttac
tggtattagtaaataatcattcaagcagtattctgtgaaaatttcattca
aaaagcaaGAGTATTG Coding sequence (CDS) from alignment at scaffold_105:479523..483288+ >TCONS_00045994 ID=TCONS_00045994|Name=TCONS_00045994|organism=Clytia hemisphaerica|type=CDS|length=2256bp|location=Sequence derived from alignment at scaffold_105:479523..483288+ (Clytia hemisphaerica)
ATGGATGATAGAAAGGAGAAGGAAGGAGGAAAGACATGTGAGGGATATGA
GGATTATTTGAACAGTGGTGATATGGAGATTACACAATGTGTAAGAGAAG
CACATCTCATGGTGGACGAAGTCATCCAAAAATCATCCAATTCTCTTCTC
TATAACAAAGACGCAAAACTTCCATACATCAAATGGTTGACCATTCAGGA
ATTTACCATTCAAAATGGCGTCTTGAAAATCGACGAGTTTATAAAGACTT
GGGATCGCAAACCAAATTGGTTGTATTGTGTAGACTTTTTGTGTCAAGAA
CACCATGAATACAGCGAGCGCTATCGATATCGCGTGAAATGGAGCATTCC
TACTCGCAGAAAACCGATCCCTCGAGCGACTGCTTCCGTTTATTTCACAT
TTGATGTCAGCAATGTCAAACCTTTGGATTCGTTGGTTGAAGTGTATTAC
ATTTTCGAAAGCAGTAAACTCGTTCATAGaGCGGACTCATCTCGGTTCCG
TGAAAAATGGCTGTCTGACGTCATCGATGCTAAAGTGCTACTGATGGATG
CTATCACTTTTTAAATGGATGATAGAAAGGAGAAGGAAGGAGGAAAGACA
TGTGAGGGATATGAGGATTATTTGAACAGTGGTGATATGGAGATTACACA
ATGTGTAAGAGAAGCACATCTCATGGTGGACGAAGTCATCCAAAAATCAT
CCAATTCTCTTCTCTATAACAAAGACGCAAAACTTCCATACATCAAATGG
TTGACCATTCAGGAATTTACCATTCAAAATGGCGTCTTGAAAATCGACGA
GTTTATAAAGACTTGGGATCGCAAACCAAATTGGTTGTATTGTGTAGACT
TTTTGTGTCAAGAACACCATGAATACAGCGAGCGCTATCGATATCGCGTG
AAATGGAGCATTCCTACTCGCAGAAAACCGATCCCTCGAGCGACTGCTTC
CGTTTATTTCACATTTGATGTCAGCAATGTCAAACCTTTGGATTCGTTGG
TTGAAGTGTATTACATTTTCGAAAGCAGTAAACTCGTTCATAGaGCGGAC
TCATCTCGGTTCCGTGAAAAATGGCTGTCTGACGTCATCGATGCTAAAGT
GCTACTGATGGATGCTATCACTTTTTAAATGGATGATAGAAAGGAGAAGG
AAGGAGGAAAGACATGTGAGGGATATGAGGATTATTTGAACAGTGGTGAT
ATGGAGATTACACAATGTGTAAGAGAAGCACATCTCATGGTGGACGAAGT
CATCCAAAAATCATCCAATTCTCTTCTCTATAACAAAGACGCAAAACTTC
CATACATCAAATGGTTGACCATTCAGGAATTTACCATTCAAAATGGCGTC
TTGAAAATCGACGAGTTTATAAAGACTTGGGATCGCAAACCAAATTGGTT
GTATTGTGTAGACTTTTTGTGTCAAGAACACCATGAATACAGCGAGCGCT
ATCGATATCGCGTGAAATGGAGCATTCCTACTCGCAGAAAACCGATCCCT
CGAGCGACTGCTTCCGTTTATTTCACATTTGATGTCAGCAATGTCAAACC
TTTGGATTCGTTGGTTGAAGTGTATTACATTTTCGAAAGCAGTAAACTCG
TTCATAGaGCGGACTCATCTCGGTTCCGTGAAAAATGGCTGTCTGACGTC
ATCGATGCTAAAGTGCTACTGATGGATGCTATCACTTTTTAAATGGATGA
TAGAAAGGAGAAGGAAGGAGGAAAGACATGTGAGGGATATGAGGATTATT
TGAACAGTGGTGATATGGAGATTACACAATGTGTAAGAGAAGCACATCTC
ATGGTGGACGAAGTCATCCAAAAATCATCCAATTCTCTTCTCTATAACAA
AGACGCAAAACTTCCATACATCAAATGGTTGACCATTCAGGAATTTACCA
TTCAAAATGGCGTCTTGAAAATCGACGAGTTTATAAAGACTTGGGATCGC
AAACCAAATTGGTTGTATTGTGTAGACTTTTTGTGTCAAGAACACCATGA
ATACAGCGAGCGCTATCGATATCGCGTGAAATGGAGCATTCCTACTCGCA
GAAAACCGATCCCTCGAGCGACTGCTTCCGTTTATTTCACATTTGATGTC
AGCAATGTCAAACCTTTGGATTCGTTGGTTGAAGTGTATTACATTTTCGA
AAGCAGTAAACTCGTTCATAGaGCGGACTCATCTCGGTTCCGTGAAAAAT
GGCTGTCTGACGTCATCGATGCTAAAGTGCTACTGATGGATGCTATCACT
TTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045994-exon-scaffold_105-1491911889:479523..479857 | TCONS_00045994-exon-scaffold_105-1491911889:479523..479857 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1510915933:479523..479857 | TCONS_00045994-exon-scaffold_105-1510915933:479523..479857 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1575043694:479523..479857 | TCONS_00045994-exon-scaffold_105-1575043694:479523..479857 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1491911889:480148..480327 | TCONS_00045994-exon-scaffold_105-1491911889:480148..480327 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1510915933:480148..480327 | TCONS_00045994-exon-scaffold_105-1510915933:480148..480327 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1575043694:480148..480327 | TCONS_00045994-exon-scaffold_105-1575043694:480148..480327 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1491911889:481670..481722 | TCONS_00045994-exon-scaffold_105-1491911889:481670..481722 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1510915933:481670..481722 | TCONS_00045994-exon-scaffold_105-1510915933:481670..481722 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1575043694:481670..481722 | TCONS_00045994-exon-scaffold_105-1575043694:481670..481722 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1491911889:482421..483288 | TCONS_00045994-exon-scaffold_105-1491911889:482421..483288 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1510915933:482421..483288 | TCONS_00045994-exon-scaffold_105-1510915933:482421..483288 | Clytia hemisphaerica | exon |
| TCONS_00045994-exon-scaffold_105-1575043694:482421..483288 | TCONS_00045994-exon-scaffold_105-1575043694:482421..483288 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:479523..483288 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025663 | AKAP_28 |
Blast
BLAST of TCONS_00045994 vs. Swiss-Prot (Human)
Match: AKA28 (A-kinase anchor protein 14 OS=Homo sapiens GN=AKAP14 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.072e-23 Identity = 63/190 (33.16%), Postives = 98/190 (51.58%), Query Frame = 3
Query: 96 DRKEKEGGKTCEGYEDYLNSGDMEITQCVREAHLMVDEVIQKSSNSLLYNKDAKLPYIKWLTIQEFTIQNGVLKIDEFIKTWDRKPNWLYCVDFLCQEHHEYSERYRYRVKWSIPTRRKPIPRATASVYFTFDVSNVKPLDSLVEVYYIFESSKLVHRADSSRFREKWLSDVIDAKVLLMDAITF*VNHI 665
D K +T +D + + E+TQ A +V++VI + ++ + L IKW+T EFT++ G+ +IDE+ K W + V+F+ ++ +S Y Y V WSI T P+ R +A YFT VS KP D+ + V Y+ + LVHR RFRE W ++ DAK M++ F N +
Sbjct: 14 DEDNKAASQTMPNTQD--KNYEDELTQV---ALALVEDVINYAVK-IVEEERNPLKNIKWMTHGEFTVEKGLKQIDEYFSKCVSKKCWAHGVEFVERKDLIHSFLYIYYVHWSISTADLPVARISAGTYFTMKVSKTKPPDAPIVVSYVGDHQALVHRPGMVRFRENWQKNLTDAKYSFMESFPFLFNRV 197
The following BLAST results are available for this feature:
|
