TCONS_00045988 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045988
Unique Name	TCONS_00045988
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	364

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_105:265339..284825+

transcript sequence

>TCONS_00045988 ID=TCONS_00045988|Name=TCONS_00045988|organism=Clytia hemisphaerica|type=transcript|length=364bp
CTGATCGACTGGTAAAGCGAGaccaaaaaccaaaacaaagatggcggctc
aCGATGGAGGTTTTTCTGGTGAAGGATCAAATCAACCCATCAAAACAACA
CCAAAAGAAGCATTAGTAATGGCTTCAATACTGAAAGAAATGGGAGTTAA
TGAGTATGAACCAAGGGTGATCAACCAAATGATTGAATTTTCCTACCGGT
ACATAACGGATGTGATTGAAGATGCTCGAGTGTATAGTCAACATGCAAAC
CGTAAAAATTTGAACTTAGACGATGTGAAACTTGCGGTCACTCAAAAGTT
GGACCACTCTTTTACCTCACCTCCTCCAAGAGAATTCTTGTTGGAGATTG
CACGCTCCAAGAac

Run BLAST on NCBI

transcript from alignment at scaffold_105:265339..284825+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045988 ID=TCONS_00045988|Name=TCONS_00045988|organism=Clytia hemisphaerica|type=transcript|length=19487bp|location=Sequence derived from alignment at scaffold_105:265339..284825+ (Clytia hemisphaerica)
CTGATCGACTGGTAAAGCGAGaccaaaaaccaaaacaaagatggcggctc
aCGATGGAGGTTTTTCTGGTGAAGGATCAAATCAACCCATCAAAACAACA
CCAAAAGAAGCATTAGTAATGGCTTCAATACTGAAAGAAATGGGAGTTAA
TGAGTATGAACCAAGGGTGATCAACCAAATGATTGAATTTTCCTACCGTA
AGTTCAATAAGTTATCACATTAAAcaaagtttaaagttttattatatttt
tttattttttttttggctttttgaaACTTATCTTAGTCCAGATATAGCCT
AGTCCAGACGGTgacagacggtactaatcgaacgTTTTATTGTGAACATT
CGATAGTCAGTGACCACCTATCGATTTTATcggtgatcgaatactcacac
TCGACTCCAGATTATTTTcgatttgttcaatcatttcgCTCGATTACTTT
TCGATTACCTTCGATTGTATTGAGTACCTTCAAGTGAGTGGCGTACAATT
TTTCTGAATTGCGGAaattgacccttttttcttcagaACTTCCAGAATCA
GGCAAAATTCTTTTGGTAGTATTTTGGAaatctgaaattgtttcggtttc
ggaaatccatgaatttttgcttcaaaatttcggtattttatccccttttt
tcgaaattcatagctacatgaaaaatcaaaaattagtcaaaatgggaaaa
atacccaaaaaaatcggtatcggaattgcaaagtatttttttacggaatt
tcggaaattttggcaaaattattcggtattttgGAAAttgcaaaccccgt
acgcccccttcGATTGTATTGAGTACCTTCTAGccttcgattttatcaaa
tatgttttcagtagcagcgcgtcaaaataatctgaaaccaagttTATTTC
GGCCAATTAAAACACGCGATTCATGCgcgaaaaccactttcgttttctcc
gaccaatcagaatgcacaaaaaccactttcgttttctccgaccaatcaga
atgcacaaaaaccactttcgttttctctgaccaatcagaaagGGCAATAt
gagttacttgaggaaacccagCAGGGCAAAATCACACAAAATGGCGGGTG
AAATGGCTGGGAAATAAGGGGGTCAATCTTTATGGCGGGccttctttttg
tgctttggttttaggtcatttttttggtttttcttaaagatatatcatag
taattggttattgaagtaatcaattggttatcgaagttgtcaaagttatc
aaaagtaatcaataacaatcaaagtactcgaaCGTTTATTGAGTCTTCGA
AGActtgttaagaaagtgatcgaaaactcacaatttttttgaaattttgg
tactcaaCATTCGATTGTTAATTGATAAGTGATCGTTCGATTACTTTGAG
cattatcgattacttcgataatcACATTTATCGATTAGTATCGTCTGGTT
TAGTGTTTAGAAAGCATCACTGgtcttttcgcctttccatttgaatccat
cttgaattgtatgcaaaaatatgggaacgaaaaagccgtggttggattta
gttgggaaatatgcaaaacataccgtcaactgctctaacttgggacgatt
ggtcaaaacacgGGACTGTGGATATCTggcacttactgttaaatctcttt
gacaaaaaatttgttttgataactccaccaagtttatcaatcatattttc
tatcataacatgtcacgataacttttactgatagcgcgccctttttaact
tttttgttttcattcaaaatgaccggatgccgattggagaattagagaac
gccagCCGATTAGAGAATTAGAGAAAGCCCGCCGCCTAACCGACTATCGC
CCAATGAGATTAACAAAAATGAGTGTGTACAACTTGCTGCGCGAGTGACA
TCAAACGTTCCAtcattttgccactaatttggtggttttcttcgttccag
acattcgtgtgtgttccactacagatttttttcatatttcgatttaaaag
cctacttggtgcgaaagagaaaaaggaaattttgtaatacgccgttcatt
aactcaactcaaatgactttggaggttgaGTGAAATGGTGCCTGAATTGC
CATCCTATGTTTTgccagatagtcccaagttagagcagtgaCGGTATGCa
agcaagtttacacaaagattaaaaagacaacaaagtatcttataaagaaa
tattataatcattagaacaataaaagatggaatttcttaataaaaaaaaa
atatttacagaacaacagaagccttttagaaatttttttttttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTCTTTGCAATATAGTGAAGACCAGT
TAAAGCTTCTTCACCGATTAATCtcattattttagaatttacaCAATCGT
GTCCTCCTGCTTTGTTAGGTTTGAAGACATGTTTAAAGATTCTGCTCAGT
TTGTAGAATTCGTAGTTGACATTCGATATTGTAGGTGTCACTCTGTAAAT
ATGGCTCATCAGGTCTGAATTTTCAGGTATTTTATCAAGCTTCCCAATGT
TCGCAAAATAGTTATTAAGAATATTACATTTCATAGGTTCATCGGTCGTA
AGGACCCCCTTTTCATCCTCTAGAGGGCCGACATTCTGTTGTTTACTTTT
TCCGATAAATTCATTGATACAATTCCAAAAGTTTTTACTTGAGGGAGAAA
GCCCCTGAAATTTATCCCTCCAATATTTTGCTTCAGCAGTTCTAAGAATT
TTAGTGCAGTGATTTTTGGCTCTGCGGTATATTTTCCACTCATGAGAGTC
CTTTGGTGTTTTTTGGGCTGTTTTAAGTAGTTTGAAGCGATTGTTTAACT
GTTTACGAATTAGTCCATTGATCCATGGATGTGATTTTGATCTTATTTTG
ACTTTACGTTCTTTGAAGTGTTCATTGACAGTACTATTATACAAGCTTTC
CCATACATATAATGTATCATCAACATCGTCAAATATATCACAAACTTGCC
ATGGGGCTGACAAGATAtcatttttcagctgttttataTCAATGTTTTTG
TAGTTTCTAACAGTTTTTATTATCGGTTTTTCCTTTAANTAATGTATCAT
CAACATCGTCAAATATATCACAAACTTGCCATGGGGCTGACAAGATAtca
tttttcagctgttttataTCAATGTTTTTGTAGTTTCTAACAGTTTTTAT
CATCGGTTTTTCCTTTATCTGTACTGCGGAGAATGAACAGAATATAAGGT
GGTGATCTGAAATTGCAGGATCCATTGATTTTGCATTATTTATCTTGTGT
TTGATCGCATTTGGTATAATTATGTGATCAATGAGAGTTTTGGATGTTTC
TGTGATGTGCGTAGGTTCTGTGATTGCATTATGTAAGTTGCGGGTGTTTA
ACAGTTTTTTTAGTTGATTTCGAATAGGTGCACTAGATTCGTTTTCCTCT
AACATATCAATATTCAGATCTCCAACAATAATTACATTACGTCTCTTGGT
TGTTATCTCACTAACAATGGTTTCAAATTTGGTAAGAAAAGTTCGATGTT
CACATGGGGGTTGATAAACACAAGAAACAAGAAATCTCTGTGATTTGACA
TTGCATTCCAACCAAGTCATTTCAAGATCTGTCTCATTTAAGGTTTTATA
TTCAATACCGTTTAGGATTTTTTTATGGTAAACTATAACTCCTCCCCagc
cattttcagtttttctgtCACGACGCAACAATTCATAGTTCTCAATTTCT
ACTTTGTCATCTGATGTATCTGGTTGAAGATGTGTTTCAGTGATAGCAAG
GATGTCTAGATTAGTTTCTTCCAACAAAACTTTGAGCACGTTTAGTTTTG
CAAGAAGTCCATTTATGTTGAGGTGAGCAACTTTTATTCCGTTTCCTTCA
TTGATTTTTGTAGCAATCTCTTTGAACGCTTTCATCATTTCCTCATCGAT
TTCTAAATTAATTTCAGTATCATTAGTCAAGAGTTCATTTAAGTTTTCAG
TTGGTATACGGTGACAATTTGGACAAAGCCAGTTAAATGTTTCCAATATT
TGAAGTTCATCATATCGCTTTGGACTGATCTGGCCACATTTGATATGTAT
CCAATTGGAGCAACCATCACATTCAATTGCTCTATGTGATATGGCAACAG
CACGATTGCAAATAGGACATCTTGGAGCCATTTTATATAGTGATTTTAGA
CAGGTTGCCGCCTTTTAGTGGACGGATCTctgtctttgtttatttttctt
ggtCATTcatcttattcactaattcttattcactaattcttaatggagtg
aatttttttatcttcttaaagacatagcatattctgtttccatgccatta
aaaaattccacgaagacagAGTACTCAcatcaactttcaaaacatgcaaa
ctgaaagcagtaattatgatgtCACACATTCTTTCCTgtgcaagaaaata
ttaaagccactcatagtgtgcaccccccccagaatagtggggggggggtt
ttgctgatttgggtcgaaaattttcaggtgggatttggggttttccaggt
tttaggtgggagaaacaagttaaggtgggagttaatttctttaggtggga
ctttgggtgttttggaaaaagttaaagtaaaatttcttattttcagattt
tatgNNNNNNNNNtatatttttttatatatttcataaatgtatataatag
acatattaatatattttggatttaacacaggttaaattgcggtttaactt
ttatttgataagcactatatacagtattcgaatggctgggtggccgccat
ccgccaactgagtctactttgctaatagccatgtgacgtcatgttcaaaa
tggccatcacatctccctgttcaagtcgacgctctaactgaaagctgaca
ggatgaaatattttacctccctccctccctgcagttatgcttgtaggcga
tcctcacttatttatactaatattgtagttattgggacaaattttcccca
aaacttattattcgaggattagccataatttcatgccaaacttatatcta
acgactcacacttacttctaAGCCATCTGActacttgattggtttctacc
cctaatataggtcataggcaaatggaaagttaaacatatataatatattg
catcttcatattacggtaaagaaattttgttttgttcctcgaattagtat
atattttttgtttttagctgggatctgggagtctgggctgaaggtgggaa
ttttaggataaagtgggacctgaattttcaggtgggacctggaaccccct
tgcacactatgccactgtttttatatatagtcatctggggtaattacggg
atgACTTTGACTTATTTGGGCATTACTCTGAAAGTATAAATCTTAGAGAT
CcgatcttttgatattttatttaaattaaTCAAAGTATAACCTTTAAACA
AGACTTATTACTTCTCCTTGAAATTAATTAATTACTAGATTTTactaaaa
ttcattttaaaggTGATCTGTAAATACCCCGTATTTTTGGGTAATTACAG
GACACCCTTGGAGAAAATATGGGACAggtataaaatattgaaaaatccat
aaatatctttccaaaaggtTGTGATATTTGAGGTTTTGCATCCACTTGAC
TTCAACAAAATTAGTGACAGTGTCCCATTATTTCTCCAGCTTTTTTCCCA
TTTGGGAAATCAGTAATATTTGTATAGAGCAATTTAGACCAATAGTCCAG
TAGAATTTAgggtcaacctagaaaaaattattataaaaggtttctatata
ccgttggaaagataattttatcagctttcaaatgaggggtagaGNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNTCATttgaaagctgataaaattatc
tttccaacggtatatagaaaccttttataataattttttctaggttgacc
cTATTATGGACGAATTTCTACTGGACTACAACTGAAGTATTTTTAGATGC
AAACCTTTGCAGGCTTTGAAAGACTTAGAGTGTAGTTATGATTCtagaaa
atcaagtttgtagttttcttataaaaaataaacacttcAAACTCAAACTT
TGTGTCCTATAATTACCCCAAGATTAAGATCTTAGATGATCTAAGATCTA
AAATCttagatattttcattttgaagaactggtgcaaaaaagtaaaaaat
caaaagtttcattttttattaataataataataataaaattctaCGACCG
CCTAAATTCTAAGCTTAGTCGGGATGGAACAGTCTCTCCAGCCACACAAA
GCCTACTTGTGTTCGTGAGAGACTATTCCATACCAGACCTTCCTCATTTC
TTGCTCATGGCAAGGACACAAAAACTATTCaaattcatatttttgttttc
aatcacTTGATCCAACAGAGTTTTCACAGGACGACCTTTCTTTGTATAAT
GATCGGCGTTAAACATAAGCAGTTTTGTTGTTCTAGAAGGTGACATTCGA
ACAACATGCGCAGTTACTAACATCAGAAGTATGAAAAATCTCGTGCAAAC
GGACATTACCAGTTTCGTCCACACATTTAAAACCACCAAGAGTATGGAGA
TTTATCGAGAAGTTTTGTAGTGCTCTCgacttttgagcaaattttgTGGT
AGCTAGTTGTATCCTGTGGTTCATCTTATTCACTAGTGCTGGGTTGGTTG
TAAAGGATTTAAGTTCCGAGGTATTTGAAATCTGATACATTATTTAGCTC
TCTATCGTTGATGTTAATAATACTCGAAGGGTAATCTGCTTCTGACGAAT
GGTTGAGAATCATCAGTTCGGTTTTATTCACATTAATGGTTAACCTGAAT
CTGGAGAAGACTGTATCCATGAGATGTGAAGCATTCTGAAGACCCAGTAT
AGAAAGCAGAAACAAGGTAACAAGACAAGTACTNCTGGAGAAGACTGTAT
CCATGAGATGTGAAGCATTCTGAAGACCCAGTATAGAAAGCAGAAAAAGT
ACCAGGTGATCTGCATATCCACAACAACGTAGTGAGGAGGATCCCCATAG
ATTTAATTTATCCACTCTCATCTTCAGTCGGTCAGAACGAGAAATTTAAT
TTGGGTTTATTCGATGTTTATGAATGAAAAATTCAATGGTGTTACCTCCT
TGTCTGACACCTGACGTTGTTGGGAATGTGATATCTTTGTACGTTAGAGA
TGTAGAGCTGTAGAGAGTCTCAAGAATTCGAAACATGCGAGAGCTTCTTT
CATTTGTGAAGCATAAATTGATGGATTTGATGAGTCACTTTTGCGGAATA
TGATCAAATGCTGCACTGAGGTCAACAAAGAGAAGATATAACGGTTTTTG
CTTTTGATTTGTGATTTGCTGCGttcttttaatctaataaataccGTCTG
TTGTTCCACGGTTAGGACGAAAACCATACTACTCGTCAGAAAGTTGTGTT
TCGTGGCAAGATTTCAATCTTAATAGGATGATACTTATGATTAATTTACA
AACAGTTGACCCAATGCTAATGCTACGATATTTTGTTGGATCTCTTTTGG
ATCTCTTCCCTTTCCAAATTGTTTTTAACTGTGAGTTGCCCCACGTATTT
GGAAGATTTAAATTGTTCCATGAATAAAGAATCATTCTGTGTATAACTTC
AAGCGTTATCGGAGTGTTGGAATGGGGAAGTAACTCAGGTTCTATGTTGT
TGCAGGCTATATTTGGTTTAAGAGCTTGCTATTGCTTTATTGAAATGGGG
CTTTTTTTATGggaaattttctatgtttggttttttgcacaaacccctgt
aactgtGGGCGAGCAACCTGTTGccaagatgttggcttgaaaatgaaaat
gaaagcactgaaaacgaaagtaaaatctgCCTGCAagaatcccgtaatct
tgataaaGGAGTCTTAGTCTATACTGATGAGAAGAATCTGAAAGATCCAA
GTTTGCAGGAAGCACCTGAAAAAACagtttgcttttttttcaaaaaacat
acaaaacgGCTACATGTGGACATGAAAAGCTTTGTAAGGAAAAATATATT
CAACTGtcattgacaaaaatacttatCCAAAACAATGAGTATGCTCAGGT
ATGCTAGAAAGCACTTCCATAAAAATCAGCCTGATACCTTtgtctgaaat
attgataaaaaagctGATACAATCAGTTTCGAAATAAGACATCCAGAGTG
CGACCATCAAGatcgaaaataagaaaaagaagactatTCATGAGACTCAA
AACATTTGAGACGCGGGCGGAAAAAAAGACCttacattgcgatcaaaaca
aTCGAGGGGCATGTCCGCGGTATTCAACTTTAACAGCTCCAATGCAAATT
TTTTAACTCCGGTTTGAAATAANGAGTTGCCCCACGTATTTGGAAGATTT
AAATTGTTCCATGAATAAAGAATCATTCTGTGTATAACTTCAAGCGTTAT
CGGAGTGTTGGAATGGGGAAGTAACTCAGGTTCTATGTTGTTGCAGGCTA
TATTTGGTTTAAGAGCTTGCTATTGCTTTATTGAAATGGGGCTTTTTTTA
TGggaaattttctatgtttggttttttgcacaaacccctgtaactgtGGG
CGAGCAACCTGTTGccaagatgttggcttgaaaatgaaaatgaaagcact
gaaaacgaaagtaaaatctgCCTGCAagaatcccgtaatcttgataaaGG
AGTCTTAGTCTATACTGATGAGAAGAATCTGAAAGATCCAAGTTTGCAGG
AAGCACCTGAAAAAACagtttgcttttttttcaaaaaacatacaaaacgG
CTACATGTGGACATGAAAAGCTTTGTAAGGAAAAATATATTCAACTGtca
ttgacaaaaatacttatCCAAAACAATGAGTATGCTCAGGTATGCTAGAA
AGCACTTCCATAAAAATCAGCCTGATACCTTtgtctgaaatattgataaa
aaagctGATACAATCAGTTTCGAAATAAGACATCCAGAGTGCGACCATCA
AGatcgaaaataagaaaaagaagactatTCATGAGACTCAAAACATTTGA
GACGCGGGCGGAAAAAAAGACCttacattgcgatcaaaacaaTCGAGGGG
CATGTCCGCGGTATTCAACTTTAACAGCTCCAATGCAAATTTTTTAACTC
CGGTTTGAAATAACAAAGGACACCGGTTTATTGAATCTCCCGATAGACAA
AGAAAATTCCCACGTTTgtatcaaatgaagactctccatagacctCCACT
TGcaaaccaaaaccaaaacaaacaaaaatgttgacttgaagaaaattatg
aaaaaaacatgCCAAAGAGGAATGAAAGTGGgctattttaaaataaaaga
aggagtgaaaataaatttaaaacaaatttatttttatttacgagtttttt
tatcatcctgatcatTTCATATGACCTAGCCTGCAtgtagagcactgatt
ttctcttttgATCGATCGGTCGCACACTGGTACTTTGGTCGGGAActgga
gtttaaaaaaaaatcaaaacagacACGAAGAGCATGTGAAAAGTTGTCTA
AACGCTGGTCGAAAAAAAGGATTACTATGAAAGTCAAATTGAATGTGATG
TCAAGCCAATTCAGGTTCATCTGGAAATGCTCtctttttttggcaatttt
tgccgttTTCGGAAAGACACattatttgatattttgttgaACACGTGGTA
TAGATGATTTCTCTACCTAACTTGacatattgagcttcaaaaagtgcaaa
aagtggtagcTCTTTNTTGATATCTCTACCTAACTTGacatattgagctt
caaaaagtgcaaaaagtggacaaaatagctcttcctggctgaaaaacact
attttaagggtcaatatcttgagttaggtacagaaatcacctatactcgc
aatatatctctaatcctaattttttgagagcttttcaaTAATAAACAACA
GGTTTctcttttctcaagctaaaattttcattaaattttgcccctatgat
ttttgcctgaaatagtcatatttgtccaaaaaatacACCGAATTgtccga
gaaaaaaaattgacatccattttattttgattcctctaccccttagcttt
ccaaaaatgtataacataagtgctttgactaaaaaagtcgcaCAACCTCA
AAAAGTCAAACAAATTTCCCTTTACTATGAGGCGCTATCTCTGGAATTAA
ATAAGAGATCTTGGTTTTTGGCTGATAATCTGGTTGCTGCAAGTTACGGA
TCagtcattttgttttcaaatggctatcgctaatgagctagATTtagcag
ttttttttaaaacgtGAGAAAGAAagtactttagtttgtcacACATTAGC
CATAACAAAAAAATCTATGGACCATTAGGTAGGCTCCCTTAAAAAGTCCA
TTATAGTCAAAACATGTATTAGCTTGATATCAGCTTTTAGCcccattttt
tgaccatttcgaaatctttttagaaagtcTTGTTTTATATCAGAAAGTGA
ATCACTAAACATAATCATTTTGACCACTGGTTTGGTTTATATATAGCCAT
ATATTTAATTTATAATATCTGGGGGTTGGGTAGCTATTGCTGAATAAGTT
AACTTCTCAAAATTATGTTGTAGAGAAGCTGAGAGTAGTCAAGAAGACTT
CATTTTTAACCTTGGGGTACATTTCACACTAAACTTGTACTTATGACAAC
AATAACGAATTAAAGAACAAGGCTTAGCCTGGAATGACGTAGAGAAATTG
AAAGTAGAAAAAATGGTTTTGAAATTCATATGCCCTCAGTTGCCCATTAT
AGAACAGAACTCGAATAAGAACAGGATCAGGATAAGAAAAATCTATTAGA
GGCTTAAAGTAGCAACAACTAAGCCCCCAGCCAAAGAAATTGACTCTGAC
TCTATTCTGTTATACTATTGACTAGAGAGCCAGATTACAAACCTTCCAAT
TGTGTTatgaaaccaaaaaaatgtttgtttatcATCTCTGAAATATCCTT
TGTCTTTTGTCGTGATATAGAGAATTCCAAAATGTTATAATTGTTTCTTG
ACTGAGGTTTCTATACTATGGTAATGAAAATCTACAACTGTCGAATTGTC
AATCTTTTCAAGTTTTAGAACATCATCACAAGGGTAAAGGGATCTGgttt
aaattctttaaaacaCATCACTTCAATTGttacgtttatttatttatttg
tttatttatttatttatctaattatttatttatttatttaaatatttatt
tatttatttatttacttatttatttatttatttatttatttatctattta
tttatttatttatttaaatatttatttatttatttatttacttatttatt
tatttatttatttatttatctatttatttatttatttatttaaatattta
tttatttatttatttacttatttatttatttatttatttatttatctatt
tatttatttatttatttaaatatttatttatttatttatttacttattta
tttatttatttatttatttatctatttatttatttatttatttaaatatt
tatttatttatttatttacttatttatttatttatttatttatttatcta
tttatttatttatttatttaaatatttatttatttatttatttacttatt
tatttatttatttatttatttatctatttatttatttatttatttaaata
tttatttatttatttatttacttatttatttatttatttatttatttagt
tatTTAGTTAGTTATTTAGTTAtttactagacggttcccgtcgtcgcaaa
cgccggttaacggttttgcttgcacatcaaaagcctttaaaatacgaTAA
TGTGCGttgacatcgttttggcttaaaatgccgaatacaataataaaaat
tatacttctaaactttctacattagtcaaaattttgtgtctgtaagcctc
gattatatgtctttttaagataacggaagtttgtgttcaatgaaatgcca
tagtgaccctgtcaaaattataGAGGGTATCCGTCGTTGCAGACGCtcaa
aggtgtctgaggtggtgagagggttgcttNTCATCGTCAAAGAAAGCAAG
CTTGAGAAGgcccgtgaaacttttgaaggTACCGACATCAAACTGACAAC
CTCTGGACGAAAATACCTTGGTGGCTTCATTGGAAGAACAGAAGGCAAAG
ATGAATACGTGAACGGGCTTGTCCAACAGTGGTGCTCTCAGCTAAAAGTA
CTGTGTGATATTGCCAAGTCCGAACCANGCTCGCGCTTTGCGgttgagca
ctgaaggttttcccgtttgttggcttcacatgaggacagcttaagaccgg
cgcatatgcaatgcaaccaagattgaaacctttttaaataatgttagacg
gagtttaatcatcaaacaacaatgttggattttgttgcgtgtgttgatat
aaaataatttgaaatcgtgcaacaaaaatgccacacctttttatttgaaa
ctttgtgacgtcgcagtactttttcatgaaattgacgtcagaactttttt
cgtttacaaatagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGGAGGTTTCATCCAC
CAACGCCATGACGAGATGAGAAACCTCTTGGCCAACCTCCTTTCACAAGT
ACACACTGACGTCTCCATCGAACCTCACCTACAATCTCTAACTGGAGAAT
CACTACCAAACAGCTCCAACAAAACAGATGAAGCCCGACTTGACGTGTCA
GCCAGAAGTTTTTGGCAAAGGGGACAACTTGCATTCTTTGACGTAAGGAT
CACAAATCCGTTCGCAAATAGTCACCTTAACCAGAAACTTCAAAACACAT
TCCAATCGAACGAACAGGAGAAAAAGCGGAAGTACAACAACCGAATCATC
ACAGTCGAGCATGGTTCGTTCAGCCCGTTCGTTATGTCTCCGTACGGAGG
ACAAGAGAAACGGAAATGATCATCACGACCCTTGCAAAGAAGCTCTCAGA
CAAAAAAGACATTGAATTTGGTATCATGTTGAATTGGTTGAGAACTAAGC
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGATCAG
CTATCCTATGCTTACGTGGATCGAGAACTGTTAGGAAATTGAACATTGAT
ATGAATGAGATTGAAATTCATGAATCTACTAGGAGAAATTTTTAGTCAAC
CTCTCTTATTATTCGTcgattttgagattatttttttcagacttttGCAT
TCTCGTTAACCCCTTGTTTTGCGCCCGGCGTGACCGCAAGGTTATGCTAC
TATCCTTATGATGTGGATTTGTGATACTTGATTTGTTTGCCtcttattat
tcgtttttaacTAAGTTAGTCTTATAATATTTAGATAAATATTAttttac
aaatagcagtgtagagtcttctctaaaaaaaatttacaaatagcagtgta
gagtcttctctaatccgagttttctacgcttgtcaaacttagcgcgagac
tttttgtatcaaaggtggataggttttccagccgcggcgttcaaatttct
CTGCTTTTTTTCAGGGTACATAACGGATGTGATTGAAGATGCTCGAGTGT
ATAGTCAACATGCAAACCGTAAAAATTTGAACTTAGACGATGTGAAACTT
GCGGTCACTCAAAAGTTGGACCACTCTTTTACCTCACCTCCTCCAAGAGA
AGtaagttttgtaattttgatcgaattagagagcctGGAATCAGCTGAAA
TAAATGTGACTTTATGGCAGTCGTGTAAACAGTATCTTAAAGGTTtcgtt
ttgattgaaaggtctgataATGCTGATGTAGTAAGaacaagtgcgacaag
attagagaaaggttttgaaaaaatgaaaNTGATGATGTAGTAAGaacaag
tgcgacaagattagaaaaaggttttgaaaaaatgaaaatatatacattga
ataaaaaacaattctcaaacaaagggacttttactgatactctttcgaat
gtttttatgtttatgataaatagaacgttttctatcttataatcaaaaca
ttcgattgtaaaaatgctcgaaatcaactttgctattttttttgcttaca
aaatcaATAGAATGCGAGGTCACATCTCGAAAAaactttcgatctttcac
ttgtttgcaggatatcgtTAATCGCTTTGATTTATATGACTCAGCATGAA
GACACTGCCCaaaataagctccttttattcccgtagaaaacctttaaagg
ACTCAACTTTCTAGGCCATGTTTTAAGCTTTCAATGTACTATTGTGCTAA
AATATAATGATGTTTAATCTACTTTTTACTCTGTGGCGatttgttttaaa
tattgaaaCACGTATAAGATTATTTAAGTGGTGTAATTAATTGAGATCAA
TTCAAATAAAATCTCTGTTTCTTCTTTATAGTTCTTGTTGGAGATTGCAC
GCTCCAAGAacaattcaaataaaatgtCTGTTTCTTCTTTATAGTTCTTG
TTGGAGATTGCACGCTCCAAGAacaattcaaataaaatgtCTGTTTCTTC
TTTATAGTTCTTGTTGGAGATTGCACGCTCCAAGAac

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029392	XLOC_029392	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045988-exon-scaffold_105-1491911889:265339..265535	TCONS_00045988-exon-scaffold_105-1491911889:265339..265535	Clytia hemisphaerica	exon
TCONS_00045988-exon-scaffold_105-1510915933:265339..265535	TCONS_00045988-exon-scaffold_105-1510915933:265339..265535	Clytia hemisphaerica	exon
TCONS_00045988-exon-scaffold_105-1575043694:265339..265535	TCONS_00045988-exon-scaffold_105-1575043694:265339..265535	Clytia hemisphaerica	exon
TCONS_00045988-exon-scaffold_105-1491911889:283803..283939	TCONS_00045988-exon-scaffold_105-1491911889:283803..283939	Clytia hemisphaerica	exon
TCONS_00045988-exon-scaffold_105-1510915933:283803..283939	TCONS_00045988-exon-scaffold_105-1510915933:283803..283939	Clytia hemisphaerica	exon
TCONS_00045988-exon-scaffold_105-1575043694:283803..283939	TCONS_00045988-exon-scaffold_105-1575043694:283803..283939	Clytia hemisphaerica	exon
TCONS_00045988-exon-scaffold_105-1491911889:284796..284825	TCONS_00045988-exon-scaffold_105-1491911889:284796..284825	Clytia hemisphaerica	exon
TCONS_00045988-exon-scaffold_105-1510915933:284796..284825	TCONS_00045988-exon-scaffold_105-1510915933:284796..284825	Clytia hemisphaerica	exon
TCONS_00045988-exon-scaffold_105-1575043694:284796..284825	TCONS_00045988-exon-scaffold_105-1575043694:284796..284825	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_105	supercontig	scaffold_105:265339..284825 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3155	14.6508	13.4331	12.2829	5.67608	5.068	6.81731	5.21909	5.03095	4.68535	2.73121	5.66563	3.75492	4.10153	3.34313	5.18007	3.5272	4.02621	2.06141	2.9068	4.15557	4.0119	8.42721	6.00465	4.90812	3.58229	2.44107	2.661	4.36822	4.45772

Blast

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BLAST of TCONS_00045988 vs. Swiss-Prot (Human)
Match: TAF9B (Transcription initiation factor TFIID subunit 9B OS=Homo sapiens GN=TAF9B PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.608e-41
Identity = 58/98 (59.18%), Postives = 79/98 (80.61%), Query Frame = 2

Query:   71 EGSNQPIKTTPKEALVMASILKEMGVNEYEPRVINQMIEFSYRYITDVIEDARVYSQHANRKNLNLDDVKLAVTQKLDHSFTSPPPREFLLEIARSKN 364
             G   P K  P++ALVMA ILK+MG+ EYEPRVINQM+EF++RY+T +++DA++YS HA + N++ DDV+LA+  + D SFTSPPPR+FLL+IAR KN
Sbjct:    3 SGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKN 100

The following BLAST results are available for this feature:

BLAST of TCONS_00045988 vs. Swiss-Prot (Human)

BLAST of TCONS_00045988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TAF9B	7.608e-41	59.18	Transcription initiation factor TFIID subunit 9B O...	[more]

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TCONS_00045988 (transcript) - C. hemisphaerica