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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045984 ID=TCONS_00045984|Name=TCONS_00045984|organism=Clytia hemisphaerica|type=transcript|length=1317bp
GTTTACTGTATATCATAAATTGTTGAAACTATAAGATGaaaaAACTAAAT
TAAAAAATCCAAACCCAAAAGAcgaaaaattgacgtcactcAAAAAGCAA
AGATGGGAGACGAAGAGAACGAGCAAGCGGCAGCCAAAGTCGAGATTTTC
CTCCAAACAGAAGACGATCAAGTGGCCGTTCAAATCGAAGAAGTGGCCGA
TGAAGAGGACGGTGAAGGCGGAGAACCGGCCGCAAAACGGCCTCGAAAGC
CTAAGACCTTCACCAAAGAGTTGGGCCTGTGGACGGACGAATCTACAGCT
ATAATGTGTGGATTATGGCAGGTGGAAGAATTGTTATACAATGGCAACCA
TCCACGACACATGTCGAAGAAACATCGCGACCGATCCATCAGAACCATCG
TTGACGGGCTGGCCAAAGAAGGAATTGATATGACGGAAGATCAGGTGGTC
GCCAAACAGAGTTCCTTACGCGCTTATTTCTCTGGACAAATCAACAAACA
AAAGCGTGAAAAACTAAAAGGAATCGACTACGTTTCTAAATGGAGACATT
TTCGTGATTGTTATTTCCTCGAAGAGTACATTGTTCCTCGAAATAAAGAC
CTTGAAGGAATCgttattgatgacgtcactcaggTGCTTGAAGAATCCAT
CCCCTTGGCCACACCTAAACGTGGTGCAGCCAATGGCAAGAGGAATTCAA
CGCCCGGCTCCGCCAAACGTTTACCGCCCATTCAAACTTTATCGCCCATG
AAGCGTGAGAAAACTGCGGACGAAGCATTTTTGGAAATGATGCAAAAAAT
TTTGACGAACATTCCTGAAGGAGAGATAAAAGACATGTTAAAGCTGAAGA
TACATCAGGAGTGTTTGGAAGCTAAATATAAAGTGTTGAATGGGAACGTG
TGACACGAGCCTTAAGTGGGTCGATCGAAAACACGGATTTCACTTGAGGC
GTCTGTTTGTTGAGCGAGCGAGCAAAGCAACATTCTTGCCTTTCCAAACA
TTTTGTATTGGTTAACTTTTATTGACttctttgtaaatatttttaactaA
CGTCTTAAAGATTCTGATGATATTCAAATATTGGAACTGgtgaaaatctt
ttgaattCTCGTGTTCAGTCCATGGCATTTGTGACCTGGAACTCGATATT
AGTTCATTGAGAGGTTTTTTAACAAAATGTTTTATTCCAAGATTATTCAA
GACTTTCActgaagaaattttcattaaaatagttttcattttgattttga
tattttctctgTAAACAACACAAGTAAGTCAAGCggctttctcaagcaag
aaaaatgaagatttgcC Run BLAST on NCBI transcript from alignment at scaffold_105:236153..238261+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045984 ID=TCONS_00045984|Name=TCONS_00045984|organism=Clytia hemisphaerica|type=transcript|length=2109bp|location=Sequence derived from alignment at scaffold_105:236153..238261+ (Clytia hemisphaerica)
GTTTACTGTATATCATAAATTGTTGAAACTATAAGATGaaaagtaaaact
tttttaGAATCATTTTTTTATACTCCTTTATCTGTTTATGGGGAACATTT
TTTAtcctttcaaatttttgtacataattgttGTATATATTAGGAATTTA
AACATAAATTTGTAgcattttggaagaaactatAGTATATAAGCTCAAAA
TGTCATCAGTAAAACGGATAATATATGGAatgcatggcgttctaaatctt
aCGTTTTGATCGAATGATATTATTGATTTATTATAACTTTCATATATAAG
AAAGATATTTAAATCCATACAAAATTCCAGGGGTCTTCCAGTGGACTCCC
GACCTCATGATTGCTTTAAAGCATCCAACCTTGCAAAGTCTTGTCCCCAA
ATTTTTAACGCCTTGCGAAGGTCACTCACAACACAACTGCTATTTCTTCC
TTTTCTCTCATAGCAATAGTCATCTTCAATCTAACCAATTACTCACAATT
ATTTTACAGAACTAAATTAAAAAATCCAAACCCAAAAGAcgaaaaattga
cgtcactcAAAAAGCAAAGATGGGAGACGAAGAGAACGAGCAAGCGGCAG
CCAAAGTCGAGATTTTCCTCCAAACAGAAGACGATCAAGTGTGAGTCACA
AATTCATTTTAAACAACACGCCCTAACACGCCCCTTTCGTTCACCCGTGT
CCCCTGATTGGTTATGGTTTACTGTGGCCATTTCTTGACGATTGAATATT
GTCAACTTTCTCTAATTctaatttttctataattcgaactaaaatattaa
gTGGTGTAATTTACTCtgttattcaaatctttctctaattcgaataaaat
ttttgGTGCCTTTAATATGGAATTAATTTTACCTCGACACTTAATAACCT
AATGATAACTAACAAACCTTAATAACCTCTTAACATTCTTTAAAgatatg
tttatttttttccagGGCCGTTCAAATCGAAGAAGTGGCCGATGAAGAGG
ACGGTGAAGGCGGAGAACCGGCCGCAAAACGGCCTCGAAAGCCTAAGACC
TTCACCAAAGAGTTGGGCCTGTGGACGGACGAATCTACAGCTATAATGTG
TGGATTATGGCAGGTGGAAGAATTGTTATACAATGGCAACCATCCACGAC
ACATGTCGAAGAAACATCGCGACCGATCCATCAGAACCATCGTTGACGGG
CTGGCCAAAGAAGGAATTGATATGACGGAAGATCAGGTGGTCGCCAAACA
GAGTTCCTTACGCGCTTATTTCTCTGGACAAATCAACAAACAAAAGCGTG
AAAAACTAAAAGGAATCGACTACGTTTCTAAATGGAGACATTTTCGTGAT
TGTTATTTCCTCGAAGAGTACATTGTTCCTCGAAATAAAGACCTTGAAGG
AATCgttattgatgacgtcactcaggTGCTTGAAGAATCCATCCCCTTGG
CCACACCTAAACGTGGTGCAGCCAATGGCAAGAGGAATTCAACGCCCGGC
TCCGCCAAACGTTTACCGCCCATTCAAACTTTATCGCCCATGAAGCGTGA
GAAAACTGCGGACGAAGCATTTTTGGAAATGATGCAAAAAATTTTGACGA
ACATTCCTGAAGGAGAGATAAAAGACATGTTAAAGCTGAAGATACATCAG
GAGTGTTTGGAAGCTAAATATAAAGTGTTGAATGGGAACGTGTGACACGA
GCCTTAAGTGGGTCGATCGAAAACACGGATTTCACTTGAGGCGTCTGTTT
GTTGAGCGAGCGAGCAAAGCAACATTCTTGCCTTTCCAAACATTTTGTAT
TGGTTAACTTTTATTGACttctttgtaaatatttttaactaACGTCTTAA
AGATTCTGATGATATTCAAATATTGGAACTGgtgaaaatcttttgaattC
TCGTGTTCAGTCCATGGCATTTGTGACCTGGAACTCGATATTAGTTCATT
GAGAGGTTTTTTAACAAAATGTTTTATTCCAAGATTATTCAAGACTTTCA
ctgaagaaattttcattaaaatagttttcattttgattttgatattttct
ctgTAAACAACACAAGTAAGTCAAGCggctttctcaagcaagaaaaatga
agatttgcC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045984-exon-scaffold_105-1491911889:236153..236194 | TCONS_00045984-exon-scaffold_105-1491911889:236153..236194 | Clytia hemisphaerica | exon |
| TCONS_00045984-exon-scaffold_105-1510915933:236153..236194 | TCONS_00045984-exon-scaffold_105-1510915933:236153..236194 | Clytia hemisphaerica | exon |
| TCONS_00045984-exon-scaffold_105-1575043694:236153..236194 | TCONS_00045984-exon-scaffold_105-1575043694:236153..236194 | Clytia hemisphaerica | exon |
| TCONS_00045984-exon-scaffold_105-1491911889:236662..236792 | TCONS_00045984-exon-scaffold_105-1491911889:236662..236792 | Clytia hemisphaerica | exon |
| TCONS_00045984-exon-scaffold_105-1510915933:236662..236792 | TCONS_00045984-exon-scaffold_105-1510915933:236662..236792 | Clytia hemisphaerica | exon |
| TCONS_00045984-exon-scaffold_105-1575043694:236662..236792 | TCONS_00045984-exon-scaffold_105-1575043694:236662..236792 | Clytia hemisphaerica | exon |
| TCONS_00045984-exon-scaffold_105-1491911889:237118..238261 | TCONS_00045984-exon-scaffold_105-1491911889:237118..238261 | Clytia hemisphaerica | exon |
| TCONS_00045984-exon-scaffold_105-1510915933:237118..238261 | TCONS_00045984-exon-scaffold_105-1510915933:237118..238261 | Clytia hemisphaerica | exon |
| TCONS_00045984-exon-scaffold_105-1575043694:237118..238261 | TCONS_00045984-exon-scaffold_105-1575043694:237118..238261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:236153..238261 + |
Blast
The following BLAST results are available for this feature:
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