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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045980 ID=TCONS_00045980|Name=TCONS_00045980|organism=Clytia hemisphaerica|type=transcript|length=862bp
ttcaatgtCAAAGAAAGGAAAACACTCTCCACCAAAGTCAATCAAACGGC
GAACTTTGAGTTCGACTTCAACGTGTTTAGGAAAGGTGAAGCAACAGCTG
TCAACAACATTCTCTCCATCGGAGAAGAACTCTCCTTTGTTCTGGAAATG
GTGGACACCACAACCAGTACCGTCAAAGCGTCGCCACAAGACTGTTTCGC
TACACGGTTGGATGGTTCTGGTAGATATGACCTCATCAAGGACAGGTGTG
AAGGGGATGACGACACAGTGTCTATCACAACACCAAATACCGACCTGCAA
GTCTTTAAATGGGACATGACCGCATTCCGGTACTTCGGAGATTCGGATGG
TGTCAAAATCACTTGTTCCGTATTGGTGTGTCGTAACATCGATCCGTCAC
AGTTGAGTGAGAAATGTTTAAGGTGCGGACAGACCGCGCGTAAACGTCGG
CGAAGAGAGGCGGACGGTTTTAGCGTTCAAGAAGTGGGAGTTGTAGATGA
ACAAATGGTGACTAGTCAACCTATCTATATCATCGATCGTAGATCAGGTA
ATTCGCAACCAAGTTCGGACGAATCAAAGGGCTTCTTCACGACTTCTGGT
GGAACCGTTCTGATCGCTTTGGTGGGAGTTCTGGTGTTGACAGTCTGCGC
TGTTTTGGTCAAAAAGAATTTCCTCAACGCTGGTGCAAACCAAAAGAGTA
AAAATGTGGAAGAAGTGGGCGTTGAGAATCCTACGTATGGCGGGGAAAGC
AAATGAATGAATAACCTTGCAATGAATGGCTGAAAgactgaatgaatgaa
taaaaaattgtaGTGTTTctggaatgcgggtgaaggaaaaaagctctcat
gcggccgacctg Run BLAST on NCBI transcript from alignment at scaffold_105:162570..168217+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045980 ID=TCONS_00045980|Name=TCONS_00045980|organism=Clytia hemisphaerica|type=transcript|length=5648bp|location=Sequence derived from alignment at scaffold_105:162570..168217+ (Clytia hemisphaerica)
ttcaatgtCAAAGAAAGGAAAACACTCTCCACCAAAGTCAGTAAGTCGAA
CTTTCTATAAACAAAGCTGTACCAGAAATTTCTGTAGATATCAAATCTAT
GATGATAAATCGGATGAGCAAAATGGCTTTAGAAAGGACCGTGGAACAAC
AGACGGTATCTACACAGTCAAACGAGTTCaccaaatttcaaacaaaaagt
cTGAACCTACATTTCTTCTATTTGTTGATCTAAGTGCAGCTTTCGACCAC
ATACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCA
AGTAATTAAAAATGAGAATTGTTCGATTGAAAAGTTTTGTGGACTGGCTA
TTGCAAAGAAAAATGATTTACAACCGAAGCTACCAGAAAATTGTCCCTCA
CGTAGCACGACAGATCTCCGTAGATATCACGTCTGTTTACAGTAAAAGCT
ACCGGTATTGAATCAAGCTATATTCTCTTGAAACCAGCCCTCTACACTTC
AACATTGTTTTTCATCGACATTACCGTTCTCGCTATTTTAAACTACACCT
TTAATGTTTCTTCATAGTCATCATACaccccggtctggaaggcttATTAT
TGTTAAGTGTTGGAGCTGACGTACGTAAATAGATCTGGTTTGCAtatttt
ttgatcatgtgactAGAAAATAAACCAATCGCAAGTATCGAAaatggtaa
cgtgatcaaaaagtatgcaaatctaAGGGAAGTTTGACAATAAAGCTAAA
CCAATACACTGCCAGACCAGGGTTTCTTTGTAATAACTATGGTTTCCTTT
CCCGCTTTCTTTGAAATTCTAGAAATAATTTTCTCCAAATTCTCTTATCA
TTTCAGATCAAACGGCGAACTTTGAGTTCGACTTCAACGTGTTTAGGAAA
GGTGAAGCAACAGCTGTCAACAACATTCTCTCCATCGGAGAAGAACTCTC
CTTTGTTCTGGAAATGGTGGACACCACAACCAGTACCGTCAAAGCGTCGC
CACAAGACTGTTTCGCTACACGGTTGGATGGTTCTGGTAGATATGACCTC
ATCAAGGACAGGTGAGACGATATTTAAAACCTATTATACAATACCAgata
taccttaaaggaagaaattttggcgggaatttaatttggcagatggccga
aaaattttttagagggaatttactatggcggatggacgaaaaaactaaat
ttggcgggaatttaatttggcgtttgctgaaaaatgtAACCTTAAAATGG
ataaatttcttccttcaaggtaCTCCTGACATACTAGGAAAACTCTTTAT
CTAAACTGGACTTAGAGTAATTGATATAAGATTACAGTTCTATGTTCAGT
CAAGAGATATTCCcaattcccaagatgattgaataggtttttgagATTCA
AACATTTTAAGTAtataagtcataaaatttggcataaatgaagtttttac
ttttatgaaaatgtgtccgctttttttgggacacactgtattttgataat
gttttcaaCATGTAGGTGTGAAGGGGATGACGACACAGTGTCTATCACAA
CACCAAATACCGACCTGCAAGTCTTTAAATGGGACATGACCGCATTCCGG
TACTTCGGAGATTCGGATGGTGTCAAAATCACTTGTTCCGTATTGGTGTG
TCGTAACATCGATCCGTCACAGTTGAGTGAGAAATGTTTAAGGTGCGGAC
AGACCGCGCGTAAACGTCGGCGAAGAGAGGCGGACGGTTTTAGCGTTCAA
GAAGTGGGAGTTGTAGATGAACAAATGGTGACTAGTCAACCTATCTATAT
CATCGATCGTAGATCAGGTATCtttgttgtgtttttttctttatctcATG
AAAGTGTTTGGTGCCCCTCCGCTTTAGAAGCCTCTCTTAGAAAGTGGAGA
AATACGGAAAAACGGATTGCGATCTACCCTACCCCTTTGGAAAGCAGAGC
CCTCGGATCGCACTTTCATCTATCATTTAAGTATTAAATAtcattcattt
aaaaaatcGCTTGTGATCTGCCGACATGAAGTTTTATtcatctggcaccc
agatgcagaaattttcattcgaCACGCCAAAGCTCTGAAGTccgagaaaa
ttttcaacaaaataaaattagaaagcaattggtccgctcctttaaAGCTT
AGCATGGGCGACCGCCAATCTGCTTTATGAATTTCATATACTAAAGATTT
AATCTCATCACCATTTTAAATATCTACACTTTTACACAGGGGGTAACCGG
GCTGTGACATAGATCATTTCGTTGGTATTGGAAAAAAGTTGAGATAATCT
TTAAAAGCTAAACTAATTCAATTAATAGCTCTTAACGGGCCCGAACGATC
CTTCAATTTGAAACACTAAGTGCCGCGAAGAGTCAGCCGCAGTATTCGGT
GAAGACAGGGATTCGATGGAAAAGAAATTATGGTGTTTAGGCATGGctaa
atttagaacgccatgtgtTAGGCTAATATTGTTTATATTATCGTGTagta
ataaacaaaaaatgttaaaattgttTTCATCAACTACGAACATAACAACA
ACAGAAATTTGGTCCACAATGCCCCATTTTACATGTAGAATAGCGGTATG
ACATCAAACTGCTGTAAATGTGCAACGATTCGAAGCAGGTCCATCGAGCA
TCTAAGAATGAAACAAAATGGAAATTGACAAAGAAtattacaaaaacaaa
gcagGCCCGACTAGCTCAGCCTGTTTGATAAATAATCAAGATTTTCACTG
GCAAATATAAAAGAttcctttttagtttttttgttggTTATTTGCGAGAT
ACTAGTTAACTCGCGCAGTAGTGTAGCCTTCCACTCCAGGAGGTCGGGGC
TCGATTCCCACTCGATGTTGTGATTCACATGACAAGTTAATGTACCTTCA
CCCGGGCATACTCATGTAATACGAGTATGCATTAAATAATTTGGTAGACA
AAACTCCAGAAGCCTGACGGTAACTGTGCTAGGTATCGATTCCACAAAAC
ACCGATAAGGTTAGAGTACGCTGACCTTGCTCCCTAACCCTTTCAATGGC
TCGCAAGCTGACAGGCAGTATAAACTGCAGCGTAAGACGGTTCTAACGAG
ACGACTTCTAGACCGCTCGATACAGCATCGTCTGTAAGGAGAAGCCAGTC
ATCACTCACTAACCGAAACACGGAAATTCACTACATCAATATTTCCACAA
CTACTTACTTTTGTTATATCCACCGGGTAAATTTTTCTCAGCACTGCATA
CATCATCGCACGTTTGTTTACTGCCGTACTTACATGTCCTCGGTATCGCC
ATTATGTGGCCTCTCGCTTCTTTCGATACTGAAAAGCCAACACAAGCTGC
ATTAGCCTGGATGGCAGCTAAGTCGTGAGCCCCCGTGTTGCCATAGAATA
AGCACGCGAAGGCTAGCAAAATTGTTACTTTAAACATGTCTACATCCACC
GCAATTGTGAGATTCACCtttatctcaaaatttcatcttAAATACGGAGT
GATAGATGATTTGCAATAAAGTTGTGAAAACCTGTCTAAACACAGCTTTC
CAAATTTTTGCATAGTACTGTCAACCcacttgtttgtttttatcttctta
ATATATTGCAACAGATCTCTTTGTGACAACATTTCTTTAAACACTCTCTA
CCCTTACGTCACGTGGTTCGTTGTATCTTTAAATAAACTACACCAAGGAA
AATGTTTCTGGCTTACTTTTCATGACCGCCATCTTACGAGAATCATATAC
CAGACCAGAAagcaaaaatagggaaaactgtGAATATTATTGTTTCTTTC
TTCTTCACGAGAGAAacacatccccttctcacagacccggtaggattttt
ccatccagtggggatgaaaataacggaccaaaaatcgatgaaaattgata
ttcctatattttttatggctgggaattccaattcttttgtttcaagtcAG
TAAATTCAGTatggatgggaaaaatagcataatattttgcagtgaagatt
agtttatttgattattatcaatggggacaaaaattggaggataatttccc
accggggacgatattttggattcccagtgggtctgtgggaAGGGGGTGTA
GAAACCATCCCCATAGTGCTCAAAGACATCTTTCCCGACTAGGAAAACAT
GCTACCTTTCTGACTCAGAAAATATTTTCTAGCCGTTTCAAGAATCTTTC
CACCCTTCTCATTAGGGAAATATTTTCCATTAAGACAATACTTGCCTTGC
CGTTCATGTTGATAACTGccctttctgaccaatcttgctccacatccttg
tcaatccaatgtaaaataaaaatattgtgaATTAAAACagatgagtaagc
aaactaGAGTGATTAGAttatttaaaagcaaaacctttAATGGCTTTGAT
TTGTATATTTGGAATCTTATTATCCAATTGAATGAAACCACTTTACAGAA
TGTTCCAATCTTTACGTCTTATTTTCTGCTCAGGTAATTCGCAACCAAGT
TCGGACGAATCAAAGGGCTTCTTCACGACTTCTGGTGGAACCGTTCTGAT
CGCTTTGGTGGGAGTTCTGGTGTTGACAGTCTGCGCTGTTTTGGTCAAAA
AGAATTTCCTCAACGCTGGTGCAAACCAAAAGAGTAAAAATGTGGAAGAA
GTGGGCGTTGAGAATCCTACGTATGGCGGGGAAAGCAAATGAATGAATAA
CCTTGCAATGAATGGCTGAAAgactgaatgaatgaataaaaaattgtaGT
GTTTctggaatgcgggtgaaggaaaaaagctctcatgcggccgacctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045980-exon-scaffold_105-1491911889:162570..162609 | TCONS_00045980-exon-scaffold_105-1491911889:162570..162609 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1510915933:162570..162609 | TCONS_00045980-exon-scaffold_105-1510915933:162570..162609 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1575043694:162570..162609 | TCONS_00045980-exon-scaffold_105-1575043694:162570..162609 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1491911889:164276..164480 | TCONS_00045980-exon-scaffold_105-1491911889:164276..164480 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1510915933:164276..164480 | TCONS_00045980-exon-scaffold_105-1510915933:164276..164480 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1575043694:164276..164480 | TCONS_00045980-exon-scaffold_105-1575043694:164276..164480 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1491911889:164935..165236 | TCONS_00045980-exon-scaffold_105-1491911889:164935..165236 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1510915933:164935..165236 | TCONS_00045980-exon-scaffold_105-1510915933:164935..165236 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1575043694:164935..165236 | TCONS_00045980-exon-scaffold_105-1575043694:164935..165236 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1491911889:167903..168217 | TCONS_00045980-exon-scaffold_105-1491911889:167903..168217 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1510915933:167903..168217 | TCONS_00045980-exon-scaffold_105-1510915933:167903..168217 | Clytia hemisphaerica | exon |
| TCONS_00045980-exon-scaffold_105-1575043694:167903..168217 | TCONS_00045980-exon-scaffold_105-1575043694:167903..168217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:162570..168217 + |
Blast
The following BLAST results are available for this feature:
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