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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045970 ID=TCONS_00045970|Name=TCONS_00045970|organism=Clytia hemisphaerica|type=transcript|length=2651bp
TTTGTCCTTCATCCTTGCTGTTTTGGTAAGTACATTTTGATCGTGTGGAT
ACCCAGTGATCATTCGGCTGGTCAGTAAATTTGTTGTAAATATTATGCAG
TGTCAGCAAATATCGGAAAAATGTCTTACGTCATTACACCATTACATCAT
GTTTGAGCGAGCGAGTCTTCATAATAAATAATCAAGATGGCGGCCTCCAG
AGAAACTACcttaaaaaagcaaattttaaattttggcccTCCAAAAATGA
AGGACTTCGTTCTGACTGAAAAGCTTGGTGAAGGATCGTATGCTTCTGTA
TATAAAGGATACAAGAAAGGAAATATACGTGAAATAGTTGCGGTAAAATG
CATCAGAAAGAGCAGTTTGGGGAAAAAGTCAAGTGAGAATTTGCTCCGTG
AAatcgaaattttgaaaagtttagaccATGAACATATtgtaaaattaaaa
gatttccaatgggatgaaaataatatttatcTGATTCTTGAGTATTGTAG
TGGTGGAGATTTATCCAgctttatcaaaaaatataagagACTTCCAGAAA
ATGTTGCTAGGAAATTTTTGCGTCAATTGGCTCTAGCATTGCAGTATATC
CGTGAAAGAAATATTTCACACATGGATTTAAAACCACACAACCTGTTGCT
CGACTCAAAAGATAATCCCACCTTGAAGGTTGGAGATTTTGGTTTCGCTC
AGCACATCTTAGACAAAGAGGGACGAGATAACTTGAGGGGGTCGCCTCTT
TACATGGCagttgaaatgtttttatcagattccTACAATGCATCTGTTGA
CTTGTGGTCTAGCGGTGTGATCTTGTTTGAAACTTTATTTGGCTCTGCTC
CCTTTGCATCTAAAACTTATGAAGAATTAGAGTTGAAGATTTTGTCAAAA
GATGAAGTTGTTATTCCAAGCACAGTTGTGTTATCACCAAACTGCAGAGA
TTTGCTTTCCAGACTTTTGCAACGAGATCCTGAGAATAGGATAACATTTG
AGGAATTTTTTTCTCATCCATTTGTAGATCTTGAGCACGCTCCAAGAAAA
GAATCATTGCAAAAAGCTATCAGCACAGTGACTGAAGCTATAAAATTTGA
TGAGAAGAAAGATTTTAAACAAGCTATTGAGAGGTACTGTTCAGCATTAG
AATATTTTATCCCTGcaatagattttgaaaatgacAGAGACAAAAAAACA
GCAATCAAAGCAAAAGTAAATCAATATGTTACAAGAGCAGAGCAAttaaa
attatatcaaaaaCAACTGGCAAAGAAATCTTTAATCTCACTCACAAGAC
AACATTCGATTGAGAATTATAGAGAGATTTTGCCTGGTTTTGATCGAGCC
TTGAAACATGCAGAACAAGGGNAAAAAATATAAGAGACTTCCAGAAAATG
TTGCTAGGAAATTTTTGCGTCAATTGGCTCTAGCATTGCAGTATATCCGT
GAAAGAAATATTTCACACATGGATTTAAAACCACACAACCTGTTGCTCGA
CTCAAAAGATAATCCCACCTTGAAGGTTGGAGATTTTGGTTTCGCTCAGC
ACATCTTAGACAAAGAGGGACGAGATAACTTGAGAGGGTCGCCTCTTTAC
ATGGCagttgaaatgtttttatcagattccTACAATGCATCTGTTGACTT
GTGGTCTAGCGGTGTGATCTTGTTTGAAACTTTATTTGGCTCTGCTCCCT
TTGCATCTAAAACTTATGAAGAATTAGAGTTGAAGATTTTGTCAAAAGAT
GAAGTTGTTATTCCAAGCACAGTTGTGTTATCACCAAACTGCAGAGATTT
GCTTTCCAGACTTTTGCAACGAGATCCTGAGAATAGGATAACATTTGAGG
AATTTTTTTCTCATCCATTTGTAGATCTTGAGCACGCTCCAAGAAAAGAA
TCATTGCAAAAAGCTATCAGCACAGTGACTGAAGCTATAAAATTTGATGA
GAAGAAAGATTTTAAACAAGCTATTGAGAGGTACTGTTCAGCATTAGAAT
ATTTTATCCCTGcaatagattttgaaaatgacAGAGACAAAAAAACAGCA
ATCAAAGCAAAAGTAAATCAATATGTTACAAGAGCAGAGCAAttaaaatt
atatcaaaaaCAACTGGCAAAGAAATCTTTAATCTCACTCACAAGACAAC
ATTCGATTGAGAATTATAGAGAGATTTTGCCTGGTTTTGATCGAGCCTTG
AAACATGCAGAACAAGGAGAATCGTTGGATGACGAGAGCAGATATGACGA
AGCCTTACAAGAATATTATAAAGGAATCGAATTGTGTATTTCTATTTGTG
GAACACTTGACAAATCTAGCGAAAGTTATCGTGTTGTGAGTGAGAAAACC
AAATCAATGATGAAACGTGCTGAAGAACTAACACTATACAGAGACACTCT
TGCAAAAAGGCACTCCCCTTCTGCCTGTTGTATTCAATAGATTTTTTATA
AAGAGATTTAGAATTTGTATTAGGTGTACAGTTTTAATTATAAGTTGTcc
taataaaaaagaaaatagttgCAATTgcataacaaacaaacaaattttgt
aatgatttttatgacatgtttttgtattttattttatagtcaGTAAATAA
ACAGTACGTTTTtgattatcaaaatcaaaagaaatgtctcatgacaatta
a Run BLAST on NCBI protein sequence of TCONS_00045970-protein >TCONS_00045970-protein ID=TCONS_00045970-protein|Name=TCONS_00045970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MAASRETTLKKQILNFGPPKMKDFVLTEKLGEGSYASVYKGYKKGNIREI
VAVKCIRKSSLGKKSSENLLREIEILKSLDHEHIVKLKDFQWDENNIYLI
LEYCSGGDLSSFIKKYKRLPENVARKFLRQLALALQYIRERNISHMDLKP
HNLLLDSKDNPTLKVGDFGFAQHILDKEGRDNLRGSPLYMAVEMFLSDSY
NASVDLWSSGVILFETLFGSAPFASKTYEELELKILSKDEVVIPSTVVLS
PNCRDLLSRLLQRDPENRITFEEFFSHPFVDLEHAPRKESLQKAISTVTE
AIKFDEKKDFKQAIERYCSALEYFIPAIDFENDRDKKTAIKAKVNQYVTR
AEQLKLYQKQLAKKSLISLTRQHSIENYREILPGFDRALKHAEQGXKI Run BLAST on NCBI transcript from alignment at scaffold_104:260308..262958 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045970 ID=TCONS_00045970|Name=TCONS_00045970|organism=Clytia hemisphaerica|type=transcript|length=2651bp|location=Sequence derived from alignment at scaffold_104:260308..262958 (Clytia hemisphaerica)
ttaattgtcatgagacatttcttttgattttgataatcaAAAACGTACTG
TTTATTTACtgactataaaataaaatacaaaaacatgtcataaaaatcat
tacaaaatttgtttgtttgttatgcAATTGcaactattttcttttttatt
aggACAACTTATAATTAAAACTGTACACCTAATACAAATTCTAAATCTCT
TTATAAAAAATCTATTGAATACAACAGGCAGAAGGGGAGTGCCTTTTTGC
AAGAGTGTCTCTGTATAGTGTTAGTTCTTCAGCACGTTTCATCATTGATT
TGGTTTTCTCACTCACAACACGATAACTTTCGCTAGATTTGTCAAGTGTT
CCACAAATAGAAATACACAATTCGATTCCTTTATAATATTCTTGTAAGGC
TTCGTCATATCTGCTCTCGTCATCCAACGATTCTCCTTGTTCTGCATGTT
TCAAGGCTCGATCAAAACCAGGCAAAATCTCTCTATAATTCTCAATCGAA
TGTTGTCTTGTGAGTGAGATTAAAGATTTCTTTGCCAGTTGtttttgata
taattttaaTTGCTCTGCTCTTGTAACATATTGATTTACTTTTGCTTTGA
TTGCTGTTTTTTTGTCTCTgtcattttcaaaatctattgCAGGGATAAAA
TATTCTAATGCTGAACAGTACCTCTCAATAGCTTGTTTAAAATCTTTCTT
CTCATCAAATTTTATAGCTTCAGTCACTGTGCTGATAGCTTTTTGCAATG
ATTCTTTTCTTGGAGCGTGCTCAAGATCTACAAATGGATGAGAAAAAAAT
TCCTCAAATGTTATCCTATTCTCAGGATCTCGTTGCAAAAGTCTGGAAAG
CAAATCTCTGCAGTTTGGTGATAACACAACTGTGCTTGGAATAACAACTT
CATCTTTTGACAAAATCTTCAACTCTAATTCTTCATAAGTTTTAGATGCA
AAGGGAGCAGAGCCAAATAAAGTTTCAAACAAGATCACACCGCTAGACCA
CAAGTCAACAGATGCATTGTAggaatctgataaaaacatttcaactGCCA
TGTAAAGAGGCGACCCTCTCAAGTTATCTCGTCCCTCTTTGTCTAAGATG
TGCTGAGCGAAACCAAAATCTCCAACCTTCAAGGTGGGATTATCTTTTGA
GTCGAGCAACAGGTTGTGTGGTTTTAAATCCATGTGTGAAATATTTCTTT
CACGGATATACTGCAATGCTAGAGCCAATTGACGCAAAAATTTCCTAGCA
ACATTTTCTGGAAGTCTCTTATATTTTTTNCCCTTGTTCTGCATGTTTCA
AGGCTCGATCAAAACCAGGCAAAATCTCTCTATAATTCTCAATCGAATGT
TGTCTTGTGAGTGAGATTAAAGATTTCTTTGCCAGTTGtttttgatataa
ttttaaTTGCTCTGCTCTTGTAACATATTGATTTACTTTTGCTTTGATTG
CTGTTTTTTTGTCTCTgtcattttcaaaatctattgCAGGGATAAAATAT
TCTAATGCTGAACAGTACCTCTCAATAGCTTGTTTAAAATCTTTCTTCTC
ATCAAATTTTATAGCTTCAGTCACTGTGCTGATAGCTTTTTGCAATGATT
CTTTTCTTGGAGCGTGCTCAAGATCTACAAATGGATGAGAAAAAAATTCC
TCAAATGTTATCCTATTCTCAGGATCTCGTTGCAAAAGTCTGGAAAGCAA
ATCTCTGCAGTTTGGTGATAACACAACTGTGCTTGGAATAACAACTTCAT
CTTTTGACAAAATCTTCAACTCTAATTCTTCATAAGTTTTAGATGCAAAG
GGAGCAGAGCCAAATAAAGTTTCAAACAAGATCACACCGCTAGACCACAA
GTCAACAGATGCATTGTAggaatctgataaaaacatttcaactGCCATGT
AAAGAGGCGACCCCCTCAAGTTATCTCGTCCCTCTTTGTCTAAGATGTGC
TGAGCGAAACCAAAATCTCCAACCTTCAAGGTGGGATTATCTTTTGAGTC
GAGCAACAGGTTGTGTGGTTTTAAATCCATGTGTGAAATATTTCTTTCAC
GGATATACTGCAATGCTAGAGCCAATTGACGCAAAAATTTCCTAGCAACA
TTTTCTGGAAGTctcttatattttttgataaagcTGGATAAATCTCCACC
ACTACAATACTCAAGAATCAgataaatattattttcatcccattggaaat
cttttaattttacaATATGTTCATggtctaaacttttcaaaatttcgatT
TCACGGAGCAAATTCTCACTTGACTTTTTCCCCAAACTGCTCTTTCTGAT
GCATTTTACCGCAACTATTTCACGTATATTTCCTTTCTTGTATCCTTTAT
ATACAGAAGCATACGATCCTTCACCAAGCTTTTCAGTCAGAACGAAGTCC
TTCATTTTTGGAgggccaaaatttaaaatttgcttttttaagGTAGTTTC
TCTGGAGGCCGCCATCTTGATTATTTATTATGAAGACTCGCTCGCTCAAA
CATGATGTAATGGTGTAATGACGTAAGACATTTTTCCGATATTTGCTGAC
ACTGCATAATATTTACAACAAATTTACTGACCAGCCGAATGATCACTGGG
TATCCACACGATCAAAATGTACTTACCAAAACAGCAAGGATGAAGGACAA
A Coding sequence (CDS) from alignment at scaffold_104:260308..262958 >TCONS_00045970 ID=TCONS_00045970|Name=TCONS_00045970|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_104:260308..262958 (Clytia hemisphaerica)
TTATATTTTTTNCCCTTGTTCTGCATGTTTCAAGGCTCGATCAAAACCAG
GCAAAATCTCTCTATAATTCTCAATCGAATGTTGTCTTGTGAGTGAGATT
AAAGATTTCTTTGCCAGTTGtttttgatataattttaaTTGCTCTGCTCT
TGTAACATATTGATTTACTTTTGCTTTGATTGCTGTTTTTTTGTCTCTgt
cattttcaaaatctattgCAGGGATAAAATATTCTAATGCTGAACAGTAC
CTCTCAATAGCTTGTTTAAAATCTTTCTTCTCATCAAATTTTATAGCTTC
AGTCACTGTGCTGATAGCTTTTTGCAATGATTCTTTTCTTGGAGCGTGCT
CAAGATCTACAAATGGATGAGAAAAAAATTCCTCAAATGTTATCCTATTC
TCAGGATCTCGTTGCAAAAGTCTGGAAAGCAAATCTCTGCAGTTTGGTGA
TAACACAACTGTGCTTGGAATAACAACTTCATCTTTTGACAAAATCTTCA
ACTCTAATTCTTCATAAGTTTTAGATGCAAAGGGAGCAGAGCCAAATAAA
GTTTCAAACAAGATCACACCGCTAGACCACAAGTCAACAGATGCATTGTA
ggaatctgataaaaacatttcaactGCCATGTAAAGAGGCGACCCCCTCA
AGTTATCTCGTCCCTCTTTGTCTAAGATGTGCTGAGCGAAACCAAAATCT
CCAACCTTCAAGGTGGGATTATCTTTTGAGTCGAGCAACAGGTTGTGTGG
TTTTAAATCCATGTGTGAAATATTTCTTTCACGGATATACTGCAATGCTA
GAGCCAATTGACGCAAAAATTTCCTAGCAACATTTTCTGGAAGTctctta
tattttttgataaagcTGGATAAATCTCCACCACTACAATACTCAAGAAT
CAgataaatattattttcatcccattggaaatcttttaattttacaATAT
GTTCATggtctaaacttttcaaaatttcgatTTCACGGAGCAAATTCTCA
CTTGACTTTTTCCCCAAACTGCTCTTTCTGATGCATTTTACCGCAACTAT
TTCACGTATATTTCCTTTCTTGTATCCTTTATATACAGAAGCATACGATC
CTTCACCAAGCTTTTCAGTCAGAACGAAGTCCTTCATTTTTGGAgggcca
aaatttaaaatttgcttttttaagGTAGTTTCTCTGGAGGCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045970-exon-scaffold_104-1491911889:260308..262958 | TCONS_00045970-exon-scaffold_104-1491911889:260308..262958 | Clytia hemisphaerica | exon |
| TCONS_00045970-exon-scaffold_104-1510915933:260308..262958 | TCONS_00045970-exon-scaffold_104-1510915933:260308..262958 | Clytia hemisphaerica | exon |
| TCONS_00045970-exon-scaffold_104-1575043694:260308..262958 | TCONS_00045970-exon-scaffold_104-1575043694:260308..262958 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:260308..262958 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006468 |
protein phosphorylation |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004672 |
protein kinase activity |
Blast
BLAST of TCONS_00045970 vs. Swiss-Prot (Human)
Match: ULK3 (Serine/threonine-protein kinase ULK3 OS=Homo sapiens GN=ULK3 PE=1 SV=2) HSP 1 Score: 420.624 bits (1080), Expect = 5.553e-137 Identity = 195/338 (57.69%), Postives = 253/338 (74.85%), Query Frame = 1
Query: 229 NFGPPKMKDFVLTEKLGEGSYASVYKGYKKGNIREIVAVKCIRKSSLGKKSSENLLREIEILKSLDHEHIVKLKDFQWDENNIYLILEYCSGGDLSSFIKKYKRLPENVARKFLRQLALALQYIRERNISHMDLKPHNLLLDSKDNPTLKVGDFGFAQHILDKEGRDNLRGSPLYMAVEMFLSDSYNASVDLWSSGVILFETLFGSAPFASKTYEELELKILSKDEVVIPSTVVLSPNCRDLLSRLLQRDPENRITFEEFFSHPFVDLEHAPRKESLQKAISTVTEAIKFDEKKDFKQAIERYCSALEYFIPAIDFENDRDKKTAIKAKVNQYVTRAE 1242
+GPP++ F+LTE+LG G+YA+VYK Y K + RE+VA+KC+ K SL K S ENLL EIEILK + H HIV+LKDFQWD +NIYLI+E+C+GGDLS FI + LPE VAR F++QLA ALQ++ ERNISH+DLKP N+LL S + P LK+ DFGFAQH+ + + LRGSPLYMA EM Y+A VDLWS GVIL+E LFG PFAS+++ ELE KI S + +P +LS +CRDLL RLL+RDP RI+F++FF+HP+VDLEH P ESL +A + V +A+K D++ D A+ YC AL++F+PA+ +E D +K AIKAKV QYV+RAE
Sbjct: 5 GWGPPRLDGFILTERLGSGTYATVYKAYAKKDTREVVAIKCVAKKSLNKASVENLLTEIEILKGIRHPHIVQLKDFQWDSDNIYLIMEFCAGGDLSRFIHTRRILPEKVARVFMQQLASALQFLHERNISHLDLKPQNILLSSLEKPHLKLADFGFAQHMSPWDEKHVLRGSPLYMAPEMVCQRQYDARVDLWSMGVILYEALFGQPPFASRSFSELEEKIRSNRVIELPLRPLLSRDCRDLLQRLLERDPSRRISFQDFFAHPWVDLEHMPSGESLGRATALVVQAVKKDQEGDSAAALSLYCKALDFFVPALHYEVDAQRKEAIKAKVGQYVSRAE 342 HSP 2 Score: 278.87 bits (712), Expect = 1.787e-83 Identity = 132/234 (56.41%), Postives = 172/234 (73.50%), Query Frame = 2
Query: 1388 LPENVARKFLRQLALALQYIRERNISHMDLKPHNLLLDSKDNPTLKVGDFGFAQHILDKEGRDNLRGSPLYMAVEMFLSDSYNASVDLWSSGVILFETLFGSAPFASKTYEELELKILSKDEVVIPSTVVLSPNCRDLLSRLLQRDPENRITFEEFFSHPFVDLEHAPRKESLQKAISTVTEAIKFDEKKDFKQAIERYCSALEYFIPAIDFENDRDKKTAIKAKVNQYVTRAE 2089
LPE VAR F++QLA ALQ++ ERNISH+DLKP N+LL S + P LK+ DFGFAQH+ + + LRGSPLYMA EM Y+A VDLWS GVIL+E LFG PFAS+++ ELE KI S + +P +LS +CRDLL RLL+RDP RI+F++FF+HP+VDLEH P ESL +A + V +A+K D++ D A+ YC AL++F+PA+ +E D +K AIKAKV QYV+RAE
Sbjct: 109 LPEKVARVFMQQLASALQFLHERNISHLDLKPQNILLSSLEKPHLKLADFGFAQHMSPWDEKHVLRGSPLYMAPEMVCQRQYDARVDLWSMGVILYEALFGQPPFASRSFSELEEKIRSNRVIELPLRPLLSRDCRDLLQRLLERDPSRRISFQDFFAHPWVDLEHMPSGESLGRATALVVQAVKKDQEGDSAAALSLYCKALDFFVPALHYEVDAQRKEAIKAKVGQYVSRAE 342
The following BLAST results are available for this feature:
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