TCONS_00045967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045967
Unique NameTCONS_00045967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045967 ID=TCONS_00045967|Name=TCONS_00045967|organism=Clytia hemisphaerica|type=transcript|length=567bp
TTCCTTTTGGAGTTTatcttaaaatttgaagaaatttttgtgtTGTACAG
ACTTTTTACATAAGAAAGGAAGAGTATCTAGCTAAAACGTCAATGTAAtg
aatttaagttttttttcgtttttggaAAAAACCCAGGTATATAAATAATG
AGATAAAAATAATATCACGTTTATTAACAtttaaaaaccttaaaaataat
atatagaCCTATTCTTCTGTATAGTGAAAACTATAATTTAGAACTATGAA
ATAAATATCAAGAtatcaacaaaataaaatatacttTCGCTTTTGTGGGA
TAAAATAaaagtcttttcttttttgaaaataaaatataagttcTTCATTG
TTTTTGTAAAAGTGCATTGATTTTATATCAATCAAAAAGTAAGGAACAAT
AAAACtactaaaaacaaaatttcaacaacGAACATAATGGCTTGAGTCTT
TTCCACTGCCCCAGCGGTTGGTTTTTGGTCCAAAACTTGATCCGATTCTG
CGTGGCTGGCCCCTGGATCCCATCAAAACCATTGACCTGACCTCGCTTGT
TGCTGCTGCTCTCTGNN
Run BLAST on NCBI

transcript from alignment at scaffold_104:202469..203035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045967 ID=TCONS_00045967|Name=TCONS_00045967|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at scaffold_104:202469..203035 (Clytia hemisphaerica)
NNCAGAGAGCAGCAGCAACAAGCGAGGTCAGGTCAATGGTTTTGATGGGA
TCCAGGGGCCAGCCACGCAGAATCGGATCAAGTTTTGGACCAAAAACCAA
CCGCTGGGGCAGTGGAAAAGACTCAAGCCATTATGTTCgttgttgaaatt
ttgtttttagtaGTTTTATTGTTCCTTACTTTTTGATTGATATAAAATCA
ATGCACTTTTACAAAAACAATGAAgaacttatattttattttcaaaaaag
aaaagactttTATTTTATCCCACAAAAGCGAaagtatattttattttgtt
gataTCTTGATATTTATTTCATAGTTCTAAATTATAGTTTTCACTATACA
GAAGAATAGGtctatatattatttttaaggtttttaaaTGTTAATAAACG
TGATATTATTTTTATCTCATTATTTATATACCTGGGTTTTTtccaaaaac
gaaaaaaaacttaaattcaTTACATTGACGTTTTAGCTAGATACTCTTCC
TTTCTTATGTAAAAAGTCTGTACAacacaaaaatttcttcaaattttaag
atAAACTCCAAAAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029380XLOC_029380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045967-exon-scaffold_104-1491911889:202469..203035TCONS_00045967-exon-scaffold_104-1491911889:202469..203035Clytia hemisphaericaexon
TCONS_00045967-exon-scaffold_104-1510915933:202469..203035TCONS_00045967-exon-scaffold_104-1510915933:202469..203035Clytia hemisphaericaexon
TCONS_00045967-exon-scaffold_104-1575043694:202469..203035TCONS_00045967-exon-scaffold_104-1575043694:202469..203035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:202469..203035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.193276	0	0	0.400925	0.211211	0.509634	0.834948	0.835095	0.41376	0.903613	0.791999	1.18635	1.23203	0.450177	0.664275	0.371969	0.533759	0	0.220473	1.2456	1.40206	0.681756	0.929722	0.531996	0.664711	0.815313	0.870124	1.09993	0.784459
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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