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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045956 ID=TCONS_00045956|Name=TCONS_00045956|organism=Clytia hemisphaerica|type=transcript|length=960bp
ATGTTCAGTGAATTTCCGTGTTTGTCAGAAGTGTGTTAATATTGCTGTCA
GTGTATGTTAGTGTACGTGGAAAGTGTTTTTAAACATCatagaaaaacat
taaaagctTTTATCCAGCTAAAAAAAGATCACTTCAAAATTGGCACTCAG
TCGTACAGGTCACAGTATGGGTATCAAAATTCTTGCTTTTTTTGCAATCG
CTTGCACCTTGGGTGTGACTCTGGTCGAAGGATGCGGGGGCGGTAGACGT
TCACCACCACCCAAATGTACATACAGAACTTGCCATGCAACCTATGGGGG
CTGGGAGAGTGATTCGTCCATCCCAGCTGGACAATGCCGCAACATCCGCA
GACGTGTCAACCACAACTACCAATCACATACACGAAATGGAGGATGTCCA
GCTTCTCAAACCTGCTCACAAAGAGATCAAGTCAAAACCAGATGTCACTG
TGCAATTCCACGTGATATTGGATGGAGTGAATGGCATCAAGTTCCAAACA
GCAATCCCTGTAAGAAGAAGAGAGTCATGAACCAAGCCTTCAGCAATCAA
TTCAGAGATGGAAGCTGTCCACAATTCCAACCCAAAATCGAAACTGTAAA
TTGTTAAACGATGTGGTGATTTTACCCATTGAAGAAATATGAACTGATTA
TTTTGTCTCAAATAcctatattcattattttccatttattttagaaatat
taAGCCTTAagcttttgatttgttttaagTAATGTAAAAAAGAAGCCTTG
AATTTGATACTGAAAAATacagatttttataaaagaggtttttttattcc
ttttaacCTTCGAGTACTGTATACCTTTTGAAGTTTTAGGCTTCTGCTGT
TTTCAAAATCTCTTTTTTATAcggtttttaaattttcttaaagaGAATTT
ATCATCCAGTCAGCTAATACATTTTGAACACTTCTTATTGAAGACAGTAT
TACTTTAAGC Run BLAST on NCBI protein sequence of TCONS_00045956-protein >TCONS_00045956-protein ID=TCONS_00045956-protein|Name=TCONS_00045956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MGIKILAFFAIACTLGVTLVEGCGGGRRSPPPKCTYRTCHATYGGWESDS
SIPAGQCRNIRRRVNHNYQSHTRNGGCPASQTCSQRDQVKTRCHCAIPRD
IGWSEWHQVPNSNPCKKKRVMNQAFSNQFRDGSCPQFQPKIETVNC Run BLAST on NCBI transcript from alignment at scaffold_104:271573..273903- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045956 ID=TCONS_00045956|Name=TCONS_00045956|organism=Clytia hemisphaerica|type=transcript|length=2331bp|location=Sequence derived from alignment at scaffold_104:271573..273903- (Clytia hemisphaerica)
ATGTTCAGTGAATTTCCGTGTTTGTCAGAAGTGTGTTAATATTGCTGTCA
GTGTATGTTAGTGTACGTGGAAAGTGTTTTTAGTAAGTATATTTTATATC
TTATTTCTCGATATTTCTCGACTTTTGTACTTCAGCATAGACTTTTGTAT
ATAGTTTCTTTAAACTTGTGTTCTATATTTGCTTTATAGCCGTTATTCTT
CAGAATACACGTGTCTGAAAACCCAACCATGTTGACTCCTTATGTTGCCT
AATATGAAGATTGATTAACACTCAGGGAGAAAGAAGCTGAAATGCGTGTT
TAAACTTTGATTATATTTTAACGTGGCGAGTATTCAAGCTTTGCAAGTTA
AGAAAAAGAATAATTGCTAATTCAATTGAAAAGAGCCGTAGAACAGAAAG
TACCAAACCACCCGGGGTCACATTTTTGATACTTCAACTTAAAAGCAATA
GACCTTATCGGAGTTTTTTATTTTTCTAAAAAAGCGATGCATTGTGGGAT
TGTTTCGAGTGTATTACAATAGAATTCCCTCGAGGAATTCCTAAGAGATT
TCTATTGTAATACACTCGAAACAGTCCCACAATGCATCGCTTTTTTAGAA
AAATAAAAAACTCCGATAAGGTCTATTAAAAACTGTTAAAGAATCTATAA
AACGGAAAAATATTCTAGTGTAAACCACAAATATAGTCAAAGGGCATAAG
TAAACAAAGACCAAAAGGAAACAGCTGTGAAAACTATCAAATACTGGTTT
TAATTCAAACCGATAAGGTGTGAGACAAACAGGTGCCAAGGTGAGAAATC
GAGATAAATCCTATTTAAAAGTACTTTTATCATACCTTATATAGAACATC
ATAGAAAAACATTAAAAGCTTTTATCCAGCTAAAAAAAGATCACTTCAAA
ATTGGCACTCAGTCGTACAGGTCACAGTATGGGTATCAAAATTCTTGCTT
TTTTTGCAATCGCTTGCACCTTGGGTGTGACTCTGGTCGAAGGATGCGGG
GGCGGTAGACGTTCACCACCACCCAAATGTACATACAGAACTTGCCATGC
AACCTATGGGGGCTGGGAGAGTGATTCGTCCATCCCAGCTGGACAATGCC
GCAACATCCGCAGACGTGTCAACCACAACTACCAATCACATACACGAAAT
GGAGGATGTCCAGCTTCTCAAACCTGCTCACAAAGAGATCAAGTCAAAAC
CAGATGTAAGTGATCACTTCAAATGTTTATAACAACAAGATTTTTCATGA
AAATCGGCATGATAGAATTTCTAAAAAATATCCTAGTTTTAAAGGAAATT
TAATCTTTTTACTTGGACAATGACTGAAAGATTTTTATCATGTTTAACAT
GATAATTCAAACTGGATTGTGTAAATCAAACTTTACTGATTATTGATAAT
GCACCAATCAAGCCTAAAGCGTGATGTGCCTGGAGCCTGGGTCTTAATGT
TAAATCAATTTCATTTTCTTAAAGAAACAGATATTTTGACGTCATTCATT
TCTGGTACACTATAACCCAGTCTCCTCTTGCATGTAGGGTTTTTAAAACG
TGTATTACACGTTTTTTATAAGAACAAACTGTATAAGAACATAAGGCTTC
GATGGCCAAAATGTTAAGAATATTTTAAGGTTTTGCGGATTCTAAAACAG
CTAGTTTCTTACAAAAATAAGTAAAAATGGTCACAAAATGGTGAAATTAA
GAACATTTTAAGAACATTTTTAAGCTTAAAACTCAAAAAGTTAAGAAAAT
CCGAAGGCTTCAAAAATTTTGGATGTTCTTAAAAAAAAAAGTATATTAAA
TGCTTCACTTTCAGGTCACTGTGCAATTCCACGTGATATTGGATGGAGTG
AATGGCATCAAGTTCCAAACAGCAATCCCTGTAAGAAGAAGAGAGTCATG
AACCAAGCCTTCAGCAATCAATTCAGAGATGGAAGCTGTCCACAATTCCA
ACCCAAAATCGAAACTGTAAATTGTTAAACGATGTGGTGATTTTACCCAT
TGAAGAAATATGAACTGATTATTTTGTCTCAAATACCTATATTCATTATT
TTCCATTTATTTTAGAAATATTAAGCCTTAAGCTTTTGATTTGTTTTAAG
TAATGTAAAAAAGAAGCCTTGAATTTGATACTGAAAAATACAGATTTTTA
TAAAAGAGGTTTTTTTATTCCTTTTAACCTTCGAGTACTGTATACCTTTT
GAAGTTTTAGGCTTCTGCTGTTTTCAAAATCTCTTTTTTATACGGTTTTT
AAATTTTCTTAAAGAGAATTTATCATCCAGTCAGCTAATACATTTTGAAC
ACTTCTTATTGAAGACAGTATTACTTTAAGC Coding sequence (CDS) from alignment at scaffold_104:271573..273903- >TCONS_00045956 ID=TCONS_00045956|Name=TCONS_00045956|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_104:271573..273903- (Clytia hemisphaerica)
GTCACTGTGCAATTCCACGTGATATTGGATGGAGTGAATGGCATCAAGTT
CCAAACAGCAATCCCTGTAAGAAGAAGAGAGTCATGAACCAAGCCTTCAG
CAATCAATTCAGAGATGGAAGCTGTCCACAATTCCAACCCAAAATCGAAA
CTGTAAATTGTTAAATGGGTATCAAAATTCTTGCTTTTTTTGCAATCGCT
TGCACCTTGGGTGTGACTCTGGTCGAAGGATGCGGGGGCGGTAGACGTTC
ACCACCACCCAAATGTACATACAGAACTTGCCATGCAACCTATGGGGGCT
GGGAGAGTGATTCGTCCATCCCAGCTGGACAATGCCGCAACATCCGCAGA
CGTGTCAACCACAACTACCAATCACATACACGAAATGGAGGATGTCCAGC
TTCTCAAACCTGCTCACAAAGAGATCAAGTCAAAACCAGATGTCACTGTG
CAATTCCACGTGATATTGGATGGAGTGAATGGCATCAAGTTCCAAACAGC
AATCCCTGTAAGAAGAAGAGAGTCATGAACCAAGCCTTCAGCAATCAATT
CAGAGATGGAAGCTGTCCACAATTCCAACCCAAAATCGAAACTGTAAATT
GTTAAATGGGTATCAAAATTCTTGCTTTTTTTGCAATCGCTTGCACCTTG
GGTGTGACTCTGGTCGAAGGATGCGGGGGCGGTAGACGTTCACCACCACC
CAAATGTACATACAGAACTTGCCATGCAACCTATGGGGGCTGGGAGAGTG
ATTCGTCCATCCCAGCTGGACAATGCCGCAACATCCGCAGACGTGTCAAC
CACAACTACCAATCACATACACGAAATGGAGGATGTCCAGCTTCTCAAAC
CTGCTCACAAAGAGATCAAGTCAAAACCAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045956-exon-scaffold_104-1575043694:273822..273903 | TCONS_00045956-exon-scaffold_104-1575043694:273822..273903 | Clytia hemisphaerica | exon |
| TCONS_00045956-exon-scaffold_104-1575043694:272699..273059 | TCONS_00045956-exon-scaffold_104-1575043694:272699..273059 | Clytia hemisphaerica | exon |
| TCONS_00045956-exon-scaffold_104-1575043694:271573..272089 | TCONS_00045956-exon-scaffold_104-1575043694:271573..272089 | Clytia hemisphaerica | exon |
| TCONS_00045956-exon-scaffold_104-1510915933:273822..273903 | TCONS_00045956-exon-scaffold_104-1510915933:273822..273903 | Clytia hemisphaerica | exon |
| TCONS_00045956-exon-scaffold_104-1510915933:272699..273059 | TCONS_00045956-exon-scaffold_104-1510915933:272699..273059 | Clytia hemisphaerica | exon |
| TCONS_00045956-exon-scaffold_104-1510915933:271573..272089 | TCONS_00045956-exon-scaffold_104-1510915933:271573..272089 | Clytia hemisphaerica | exon |
| TCONS_00045956-exon-scaffold_104-1491911889:273822..273903 | TCONS_00045956-exon-scaffold_104-1491911889:273822..273903 | Clytia hemisphaerica | exon |
| TCONS_00045956-exon-scaffold_104-1491911889:272699..273059 | TCONS_00045956-exon-scaffold_104-1491911889:272699..273059 | Clytia hemisphaerica | exon |
| TCONS_00045956-exon-scaffold_104-1491911889:271573..272089 | TCONS_00045956-exon-scaffold_104-1491911889:271573..272089 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:271573..273903 - |
Blast
The following BLAST results are available for this feature:
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