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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045950 ID=TCONS_00045950|Name=TCONS_00045950|organism=Clytia hemisphaerica|type=transcript|length=1878bp
ATACTCTCTCGCAATTTAATTAGAAACTTGAAAGCAATGTCTTTCTATTG
GGGGTAGGTTAGTGTGAAACATAAGAAGGAAAGGTTTAAAAGAGAAATCT
ACTTTTTATACGACTTCAATTCTGAAACCATTCGATCAGTCAGTCACTAA
ACGTGGGAGTTGATATAGAAACTTTTGAAGCACCTCATTCAAAATATGGA
TTGAAGGTTAAACTGTTAGAAAATTCTCTGGCACCTATTTGTGGTTTAAA
TTAAACTGATCGATTGAGTATATAGTTTTGGCGAAGAGAAACAGCTATTA
CCTGGAGTCTTACCAGCTTCCTGTTATCACAATGAGCGATCTAGGGAGCG
TACGCACGCTTTACGCGTACACCGCTCAAAATGATGAAGAGATGTCGTTT
GAAAGCGATTCAGTATTCAAAATCTTGGATAAGAATGACGAGAATTGGTG
GTTAGCTTTGAATGAATCGACCTCTATGCAAGGACTTGTACCGACTAATT
ATGTTGAAGAAATACTATCacataaagaaaatgaagacaatGAAGTCAAT
TATATGAATCCAGCTGAATTATTCCAACAAAATGATGGCTATGAAAAAAT
GGagcaaacgaaaaaaaaagtttctttcaacGTGTTAACGAAATTCAAAT
ACCAAGCTACTTATCATGATGAATTATCTTTTGAAGCAAATGAACTTCTT
GAAATCGTAGAAACGAATAATAATTACCTGGGTTGGTTAACTGCTAAAAA
CAGTAAAGGAGAATCCGGAATTATCCCTGGAAACTACGTTGAAGAGATTG
TCAAAACACCAAGCCCGACTACAGCTAAGATGCCAGACATTCTTCAAAAT
TGTAAAGATATCAAAGAGCATAGAGCTAGTCTACTTGTAGAACGCCAGGA
CCCATTTCCAGTTGAAAAAGCCAAAGAAGCCAAATCGAGCCCCGGTGTAA
AAACCTTAACTAAATTATTGGTCGATTCACAAGATGCTGGATTCAGAAGA
GAGGCTTATTTTGCCGGGAAAGTCGGGCGATCGGATTGTGAGAGAAAATT
GATGGGAAAGAAAGAAGGGGCATTCCTGATACGAGAAAGTGAAAGTTCGG
CTGGCAACGTAACCTTATCACTGAAATGTCCGGAAGATATCATCCATTTC
TTGGTCAAAATCGCACCAGACGAGTTCATTATCGGCCACCGTTCATTTGC
TACCATCCAAGAACTTGTTGATTACTATTCACATACGAATCCAATATTTA
CATCAAAAAGCGGAAAGAAAGTTTTCCTGGGTACTCCTTACCATGAAAAA
TGAAGGGAAcaattttctaaatatataatgaTGGATCAACTACGCTCAGG
AAAAACGTTTTTTAGTGATACCATCCAAAGTGAAACAGGGATTATGACTT
AATGTATctacacttttgaggacggtaaagtttCTGAAACAATTTGAAGC
GACCTGCAATATCGACGTGTTGATTTACCGTTTTCTTAACAGACAAATTT
GAAACTAGTCGTCTCTGTCACCGGAAAAGTGTCATAGATAGACTTGGTTA
ACAATCGAAGGGAGACGGGAACACAAGACGGAGACACTGATGTGGTGTCT
GAGCATAATAGAAAtatgaattaaaaagaaaaaattcttaaaactttaAC
TGGTTAAGAAatcattttgtcaaatttaagcCCAGGGGGagaggcactta
ggcaaaattgggtacagagacgtgccgctggtcagggtcccctTTTTAAA
CtatgaagatatctgacaggttcCTAAATtaactaattttcaagatgtag
acctgacagggtcgactttggctattttggacaatttttatGGTGGAAAT
TAGAAATTCCTTCCAATTTTCGTctaat Run BLAST on NCBI protein sequence of TCONS_00045950-protein >TCONS_00045950-protein ID=TCONS_00045950-protein|Name=TCONS_00045950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MSDLGSVRTLYAYTAQNDEEMSFESDSVFKILDKNDENWWLALNESTSMQ
GLVPTNYVEEILSHKENEDNEVNYMNPAELFQQNDGYEKMEQTKKKVSFN
VLTKFKYQATYHDELSFEANELLEIVETNNNYLGWLTAKNSKGESGIIPG
NYVEEIVKTPSPTTAKMPDILQNCKDIKEHRASLLVERQDPFPVEKAKEA
KSSPGVKTLTKLLVDSQDAGFRREAYFAGKVGRSDCERKLMGKKEGAFLI
RESESSAGNVTLSLKCPEDIIHFLVKIAPDEFIIGHRSFATIQELVDYYS
HTNPIFTSKSGKKVFLGTPYHEK Run BLAST on NCBI transcript from alignment at scaffold_104:308306..311209+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045950 ID=TCONS_00045950|Name=TCONS_00045950|organism=Clytia hemisphaerica|type=transcript|length=2904bp|location=Sequence derived from alignment at scaffold_104:308306..311209+ (Clytia hemisphaerica)
ATACTCTCTCGCAATTTAATTAGAAACTTGAAAGCAATGTCTTTCTATTG
GGGGTAGGTTAGTGTGAAACATAAGAAGGAAAGGTTTAAAAGAGAAATCT
ACTTTTTATACGACTTCAATTCTGAAACCATTCGATCAGTCAGTCACTAA
ACGTGGGAGTTGATATAGAAACTTTTGAAGCACCTCATTCAAAATATGGA
TTGAAGGTTAAACTGTTAGAAAATTCTCTGGCACCTATTTGTGGTTTAAA
TTAAACTGATCGATTGAGTATATAGTTTTGGCGAAGAGAAACAGCTATTA
CCTGGAGTCTTACCAGCTTCCTGTTATCACAATGAGCGATCTAGGGAGCG
TACGCACGCTTTACGCGTACACCGCTCAAAATGATGAAGAGATGTCGTTT
GAAAGCGATTCAGTATTCAAAATCTTGGATAAGAATGACGAGAATTGGTG
GTTAGCTTTGAATGAATCGACCTCTATGCAAGGACTTGTACCGACTAATT
ATGTTGAAGAAATACTATCacataaagaaaatgaagacaatGAAGTCAAT
TATATGAATCCAGCTGAATTATTCCAACAAAATGATGGCTATGAAAAAAT
GGagcaaacgaaaaaaaaagtttctttcaacGTGTTAACGAAATTCAAAT
ACCAAGCTACTTATCATGATGAATTATCTTTTGAAGCAAATGAACTTCTT
GAAATCGTAGAAACGAATAATAATTACCTGGGTTGGTTAACTGCTAAAAA
CAGTAAAGGAGAATCCGGAATTATCCCTGGAAACTACGTTGAAGAGATTG
TCAAAACACCAAGCCCGACTACAGCTAAGATGCCAGACATTCTTCAAAAT
TGTAAAGATATCAAAGAGCATAGAGCTAGTCTACTTGTAGAACGCCAGGA
CCCATTTCCAGTTGAAAAAGCCAAAGAAGCCAAATCGAGCCCCGGTGTAA
AAACCTTAACTAAATTATTGGTCGATTCACAAGATGCTGGATTCAGAAGA
GAGGCTTATTTTGCCGGGAAAGTCGGGCGATCGGATTGTGAGAGAAAATT
GATGGGAAAGAAAGAAGGGGCATTCCTGATACGAGAAAGTGAAAGTTCGG
TGAgtcatatttgttttttttgttttaattgcTCAAATTTTAATATAATG
TGTCCTAAAAAAAGCGGTCAACATTCTATATTTAAAGTGAAATCCTCAAA
ACTTATCATATTAATTGGGCTTATTATGATTGAAATTAGGCTAGAATTTC
CTGTTTGAACATGTTTTTAGAAGTcataaatattgaaataaattatgagg
atttactttgtataaaaatttgtttgcttttttctGTGACACACCATAAC
TGCACTGGGATTCTTAAAAGTAGTTATACTatagattgggcttttccaga
aaaaaatttaattttgggggtggaggatataacatttcttggaaatttac
cccccccctggACAACAGGTCTAACTCTCCCGGACAACAGGTCTaacccc
cccggacaagcattagttgacccccctggacactcaaaattaccctcaaa
cagagcaaaatcacccccaaacagagcaagtttgccccccggacaaggca
aattttgtagatttttcactacccacCGGAcgctatatcctccaccccca
tgtacgggcattttctggaagagcccaatacatAACAAGTTCGATGCTTG
GTCCATCTTTCCAGATATCATACGACTCTATCTGGACCAAACAGTATTTT
ATAGGATTTTAATTGAATAGCTCAACCATCGAGTTTCAACCCAAATGCTG
GAAACGAATCTTCAGCTATTccaaaataaagaaacagtaaataaagcctt
aaaatttgaaCTCAGAACATTGTTTTATTCTGGCGGTCAATGCTACTTCC
AATCCAGCATTTGTATGAAAACCATGCGGGGCGCACAACTTGCGTAGGTA
ATAAGTGGCTTCAAGCCCTACATAGGAGATTTACCTTTGGCTATACGTTT
ATCaatacagaaaaaatatttggctgtttttggtaattttcttaATGTTT
TAACTAATTGATCGTTTAATATACTAACTGTATCTCGGGCAATGGGTTAA
TTGTGTTTTCTTTTCTAATTTCCAGGCTGGCAACGTAACCTTATCACTGA
AATGTCCGGAAGATATCATCCATTTCTTGGTCAAAATCGCACCAGACGAG
TTCATTATCGGCCACCGTTCATTTGCTACCATCCAAGAACTTGTTGATTA
CTATTCACATACGAATCCAATATTTACATCAAAAAGCGGAAAGAAAGTTT
TCCTGGGTACTCCTTACCATGAAAAATGAAGGGAAcaattttctaaatat
ataatgaTGGATCAACTACGCTCAGGAAAAACGTTTTTTAGTGATACCAT
CCAAAGTGAAACAGGGATTATGACTTAATGTATctacacttttgaggacg
gtaaagtttCTGAAACAATTTGAAGCGACCTGCAATATCGACGTGTTGAT
TTACCGTTTTCTTAACAGACAAATTTGAAACTAGTCGTCTCTGTCACCGG
AAAAGTGTCATAGATAGACTTGGTTAACAATCGAAGGGAGACGGGAACAC
AAGACGGAGACACTGATGTGGTGTCTGAGCATAATAGAAAtatgaattaa
aaagaaaaaattcttaaaactttaACTGGTTAAGAAatcattttgtcaaa
tttaagcCCAGGGGGagaggcacttaggcaaaattgggtacagagacgtg
ccgctggtcagggtcccctTTTTAAACtatgaagatatctgacaggttcC
TAAATtaactaattttcaagatgtagacctgacagggtcgactttggcta
ttttggacaatttttatGGTGGAAATTAGAAATTCCTTCCAATTTTCGTc
taat Coding sequence (CDS) from alignment at scaffold_104:308306..311209+ >TCONS_00045950 ID=TCONS_00045950|Name=TCONS_00045950|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_104:308306..311209+ (Clytia hemisphaerica)
ATGAGCGATCTAGGGAGCGTACGCACGCTTTACGCGTACACCGCTCAAAA
TGATGAAGAGATGTCGTTTGAAAGCGATTCAGTATTCAAAATCTTGGATA
AGAATGACGAGAATTGGTGGTTAGCTTTGAATGAATCGACCTCTATGCAA
GGACTTGTACCGACTAATTATGTTGAAGAAATACTATCacataaagaaaa
tgaagacaatGAAGTCAATTATATGAATCCAGCTGAATTATTCCAACAAA
ATGATGGCTATGAAAAAATGGagcaaacgaaaaaaaaagtttctttcaac
GTGTTAACGAAATTCAAATACCAAGCTACTTATCATGATGAATTATCTTT
TGAAGCAAATGAACTTCTTGAAATCGTAGAAACGAATAATAATTACCTGG
GTTGGTTAACTGCTAAAAACAGTAAAGGAGAATCCGGAATTATCCCTGGA
AACTACGTTGAAGAGATTGTCAAAACACCAAGCCCGACTACAGCTAAGAT
GCCAGACATTCTTCAAAATTGTAAAGATATCAAAGAGCATAGAGCTAGTC
TACTTGTAGAACGCCAGGACCCATTTCCAGTTGAAAAAGCCAAAGAAGCC
AAATCGAGCCCCGGTGTAAAAACCTTAACTAAATTATTGGTCGATTCACA
AGATGCTGGATTCAGAAGAGAGGCTTATTTTGCCGGGAAAGTCGGGCGAT
CGGATTGTGAGAGAAAATTGATGGGAAAGAAAGAAGGGGCATTCCTGATA
CGAGAAAGTGAAAGTTCGGCTGGCAACGTAACCTTATCACTGAAATGTCC
GGAAGATATCATCCATTTCTTGGTCAAAATCGCACCAGACGAGTTCATTA
TCGGCCACCGTTCATTTGCTACCATCCAAGAACTTGTTGATTACTATTCA
CATACGAATCCAATATTTACATCAAAAAGCGGAAAGAAAGTTTTCCTGGG
TACTCCTTACCATGAAAAATGAATGAGCGATCTAGGGAGCGTACGCACGC
TTTACGCGTACACCGCTCAAAATGATGAAGAGATGTCGTTTGAAAGCGAT
TCAGTATTCAAAATCTTGGATAAGAATGACGAGAATTGGTGGTTAGCTTT
GAATGAATCGACCTCTATGCAAGGACTTGTACCGACTAATTATGTTGAAG
AAATACTATCacataaagaaaatgaagacaatGAAGTCAATTATATGAAT
CCAGCTGAATTATTCCAACAAAATGATGGCTATGAAAAAATGGagcaaac
gaaaaaaaaagtttctttcaacGTGTTAACGAAATTCAAATACCAAGCTA
CTTATCATGATGAATTATCTTTTGAAGCAAATGAACTTCTTGAAATCGTA
GAAACGAATAATAATTACCTGGGTTGGTTAACTGCTAAAAACAGTAAAGG
AGAATCCGGAATTATCCCTGGAAACTACGTTGAAGAGATTGTCAAAACAC
CAAGCCCGACTACAGCTAAGATGCCAGACATTCTTCAAAATTGTAAAGAT
ATCAAAGAGCATAGAGCTAGTCTACTTGTAGAACGCCAGGACCCATTTCC
AGTTGAAAAAGCCAAAGAAGCCAAATCGAGCCCCGGTGTAAAAACCTTAA
CTAAATTATTGGTCGATTCACAAGATGCTGGATTCAGAAGAGAGGCTTAT
TTTGCCGGGAAAGTCGGGCGATCGGATTGTGAGAGAAAATTGATGGGAAA
GAAAGAAGGGGCATTCCTGATACGAGAAAGTGAAAGTTCGGCTGGCAACG
TAACCTTATCACTGAAATGTCCGGAAGATATCATCCATTTCTTGGTCAAA
ATCGCACCAGACGAGTTCATTATCGGCCACCGTTCATTTGCTACCATCCA
AGAACTTGTTGATTACTATTCACATACGAATCCAATATTTACATCAAAAA
GCGGAAAGAAAGTTTTCCTGGGTACTCCTTACCATGAAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045950-exon-scaffold_104-1491911889:308306..309404 | TCONS_00045950-exon-scaffold_104-1491911889:308306..309404 | Clytia hemisphaerica | exon |
| TCONS_00045950-exon-scaffold_104-1510915933:308306..309404 | TCONS_00045950-exon-scaffold_104-1510915933:308306..309404 | Clytia hemisphaerica | exon |
| TCONS_00045950-exon-scaffold_104-1575043694:308306..309404 | TCONS_00045950-exon-scaffold_104-1575043694:308306..309404 | Clytia hemisphaerica | exon |
| TCONS_00045950-exon-scaffold_104-1491911889:310431..311209 | TCONS_00045950-exon-scaffold_104-1491911889:310431..311209 | Clytia hemisphaerica | exon |
| TCONS_00045950-exon-scaffold_104-1510915933:310431..311209 | TCONS_00045950-exon-scaffold_104-1510915933:310431..311209 | Clytia hemisphaerica | exon |
| TCONS_00045950-exon-scaffold_104-1575043694:310431..311209 | TCONS_00045950-exon-scaffold_104-1575043694:310431..311209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:308306..311209 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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