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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045937 ID=TCONS_00045937|Name=TCONS_00045937|organism=Clytia hemisphaerica|type=transcript|length=1648bpRun BLAST on NCBI protein sequence of TCONS_00045937-protein >TCONS_00045937-protein ID=TCONS_00045937-protein|Name=TCONS_00045937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp MNRSRPFKFSVSPPNTNTKATTLGRKQQLAQSKLKNVLDVRVIPGHPQQARun BLAST on NCBI transcript from alignment at scaffold_104:99975..132856+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045937 ID=TCONS_00045937|Name=TCONS_00045937|organism=Clytia hemisphaerica|type=transcript|length=32882bp|location=Sequence derived from alignment at scaffold_104:99975..132856+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_104:99975..132856+ >TCONS_00045937 ID=TCONS_00045937|Name=TCONS_00045937|organism=Clytia hemisphaerica|type=CDS|length=16401bp|location=Sequence derived from alignment at scaffold_104:99975..132856+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00045937 vs. Swiss-Prot (Human)
Match: CCD15 (Coiled-coil domain-containing protein 15 OS=Homo sapiens GN=CCDC15 PE=2 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.047e-16 Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 1327 RYIDALRQTSKERTRINGVFLPPLCPCGPSIWDTHPESCANNCVFYKNPKGYIRALTTVL 1506
RY++ALR +E+ ++ + LPPLC CGP WD HP++CANNC+FYKN + Y RAL + +
Sbjct: 862 RYVEALRAQIQEKMQLYNITLPPLCCCGPDFWDAHPDTCANNCIFYKNHRAYTRALHSFI 921 The following BLAST results are available for this feature:
BLAST of TCONS_00045937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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