TCONS_00045930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045930
Unique NameTCONS_00045930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045930 ID=TCONS_00045930|Name=TCONS_00045930|organism=Clytia hemisphaerica|type=transcript|length=403bp
ATCTTATTTGCTGGATGAAATAAAATCAAGATAACAAAGTTTTATCCATT
GTTGCACAACTCGAAAAGCTTTGCTTTGTTGTCTTGATTTGAACTTTCTA
TCTAAAATTAAAATGGCTACcttcaaattgaatttcttttaaacATACAG
GAACAGATAGTTAAATACAACATATTATTACTTATTTATGGCAGAAAATA
ATGATGGTGAGCAGCAGTGTTCCTCACAGCCATCACCGTCAAAGGGACCA
AGAAAGACAAGTAAGTAGTTTCTTCTTTgtgttcaacattttcatttgtc
acattttgtgaaaaaatgagGCGTCGAGTGGTggaaaaacaagtttttgt
gATTGTTTTTTAACGCCCAGTCAGCACTTTCACCTTGAACTGACTGCCAA
GTG
Run BLAST on NCBI

transcript from alignment at scaffold_103:8765..9167

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045930 ID=TCONS_00045930|Name=TCONS_00045930|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at scaffold_103:8765..9167 (Clytia hemisphaerica)
CACTTGGCAGTCAGTTCAAGGTGAAAGTGCTGACTGGGCGTTAAAAAACA
ATcacaaaaacttgtttttccACCACTCGACGCctcattttttcacaaaa
tgtgacaaatgaaaatgttgaacacAAAGAAGAAACTACTTACTTGTCTT
TCTTGGTCCCTTTGACGGTGATGGCTGTGAGGAACACTGCTGCTCACCAT
CATTATTTTCTGCCATAAATAAGTAATAATATGTTGTATTTAACTATCTG
TTCCTGTATgtttaaaagaaattcaatttgaagGTAGCCATTTTAATTTT
AGATAGAAAGTTCAAATCAAGACAACAAAGCAAAGCTTTTCGAGTTGTGC
AACAATGGATAAAACTTTGTTATCTTGATTTTATTTCATCCAGCAAATAA
GAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029353XLOC_029353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045930-exon-scaffold_103-1491911889:8765..9167TCONS_00045930-exon-scaffold_103-1491911889:8765..9167Clytia hemisphaericaexon
TCONS_00045930-exon-scaffold_103-1510915933:8765..9167TCONS_00045930-exon-scaffold_103-1510915933:8765..9167Clytia hemisphaericaexon
TCONS_00045930-exon-scaffold_103-1575043694:8765..9167TCONS_00045930-exon-scaffold_103-1575043694:8765..9167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_103supercontigscaffold_103:8765..9167 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.687283	0.428808	0.35084	0.202576	1.08922	0.244779	0.235115	1.54877	4.85095	8.60074	8.0666	10.9051	4.01155	8.29017	3.5049	6.21995	5.39689	7.57373	6.10625	9.00764	6.9779	5.3748	2.08866	3.12706	0	0	7.93387	6.83564	5.04114	4.32526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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