TCONS_00045928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045928
Unique NameTCONS_00045928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length190

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045928 ID=TCONS_00045928|Name=TCONS_00045928|organism=Clytia hemisphaerica|type=transcript|length=190bp
GAGGAAGACAGTCAAGAAACCCAGTCATTGCATGAAGATGATGAAGAGAT
TCCTCTTACAGATGACGAAACTATGGCGAATAGACCAATAAAAAACTATT
CATTATCAGAATTGACGGACGAGGACAAGTTCAAAACCAGTAAGGTGTTC
CTTAGACATTTTAAGGTGTTCACCATGAACAAGCTTACGC
Run BLAST on NCBI

transcript from alignment at scaffold_103:43549..44341-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045928 ID=TCONS_00045928|Name=TCONS_00045928|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at scaffold_103:43549..44341- (Clytia hemisphaerica)
GAGGAAGACAGTCAAGAAACCCAGTCATTGCATGAAGATGATGAAGAGAT
TCCTCTTACAGGTAATTTCAAGAAAAAGTTAAATAATTCTCCACTAAAAT
GTCTTCTTTCCCGTGAACACCTTTTTCACATAGCTGAAATGGGTGCTGAA
TAGATTATTGATGAAGTAAAAGGCTTTGAAAATAATGGCGTTTGGTCATA
GTACATTTGGATTTTGAAAAAATAAAAATGTTTCTTGAATTTTGGATAAA
ATTTTGGCAATGTTTTGCTATCATTGGGCTGAATTCGTCATGTATTTCAA
ATTTAGATTTTCAAAATGCAAATGAAGGGGTTATATTATAAATCAAACAC
TCCAAATAATTTAACGTTTTTTTTGTTTAGATGACGAAACTATGGCGAAT
AGACCAATAAAAAACTATTCATTATCAGGTATGAGTGCTTCTTTTTGAGT
AGCCAATGGCCATCTTATTCTGCTAAATTTTCAAACGGCCGCTTTGACAC
AAGACACGTGTTCGATGTCACGCTAGATACTTCCTATTATTTTTATTGTT
TTTTCTATTTGGTTCTAACTATATTGTTTTTTTTTCTTTCTGGAAGTGCT
CCTCATCTAAGACATTATGACATACAGGATATTAGGCTTATTTGACGAGA
TTTGACAACTAAACCTGTCGGAAATTTTACCAGTCTAGTCTGAAGTCTGT
TTTTTTCTACAGAATTGACGGACGAGGACAAGTTCAAAACCAGTAAGGTG
TTCCTTAGACATTTTAAGGTGTTCACCATGAACAAGCTTACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029351XLOC_029351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045928-exon-scaffold_103-1575043694:44281..44341TCONS_00045928-exon-scaffold_103-1575043694:44281..44341Clytia hemisphaericaexon
TCONS_00045928-exon-scaffold_103-1575043694:43914..43961TCONS_00045928-exon-scaffold_103-1575043694:43914..43961Clytia hemisphaericaexon
TCONS_00045928-exon-scaffold_103-1575043694:43549..43629TCONS_00045928-exon-scaffold_103-1575043694:43549..43629Clytia hemisphaericaexon
TCONS_00045928-exon-scaffold_103-1510915933:44281..44341TCONS_00045928-exon-scaffold_103-1510915933:44281..44341Clytia hemisphaericaexon
TCONS_00045928-exon-scaffold_103-1510915933:43914..43961TCONS_00045928-exon-scaffold_103-1510915933:43914..43961Clytia hemisphaericaexon
TCONS_00045928-exon-scaffold_103-1510915933:43549..43629TCONS_00045928-exon-scaffold_103-1510915933:43549..43629Clytia hemisphaericaexon
TCONS_00045928-exon-scaffold_103-1491911889:44281..44341TCONS_00045928-exon-scaffold_103-1491911889:44281..44341Clytia hemisphaericaexon
TCONS_00045928-exon-scaffold_103-1491911889:43914..43961TCONS_00045928-exon-scaffold_103-1491911889:43914..43961Clytia hemisphaericaexon
TCONS_00045928-exon-scaffold_103-1491911889:43549..43629TCONS_00045928-exon-scaffold_103-1491911889:43549..43629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_103supercontigscaffold_103:43549..44341 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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