TCONS_00045926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045926
Unique NameTCONS_00045926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045926 ID=TCONS_00045926|Name=TCONS_00045926|organism=Clytia hemisphaerica|type=transcript|length=326bp
aaaattttggatttcaagGTGGTTAATGTCAAGGAATGCAAAAACTCGCA
AGggaTGGAGAAAGAAGGATTTATTAGATCAATTGTACAGTTGGTAGAAG
AACTAATCGATCTCGCTGTGATTTCAACTGATCGACACACGCAAATCAAG
AAGCTTATGGCAACTGATCCCCTTTTCAATTGGCTGATTCACCAATTCGA
TCCATGGCATATGGCTAAAGGATTGtcgaaaaaaatcatcaaagctTCAA
AGAAGAAAGGATACGAGAAGCTGGCAGATTGGGCTCCAATGATAGTCAAT
CATTTGTATTGGGCGGTTCAAAATTG
Run BLAST on NCBI

protein sequence of TCONS_00045926-protein

>TCONS_00045926-protein ID=TCONS_00045926-protein|Name=TCONS_00045926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
KILDFKVVNVKECKNSQGMEKEGFIRSIVQLVEELIDLAVISTDRHTQIK
KLMATDPLFNWLIHQFDPWHMAKGLSKKIIKASKKKGYEKLADWAPMIVN
HLYWAVQN
Run BLAST on NCBI

transcript from alignment at scaffold_103:38170..38895+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045926 ID=TCONS_00045926|Name=TCONS_00045926|organism=Clytia hemisphaerica|type=transcript|length=726bp|location=Sequence derived from alignment at scaffold_103:38170..38895+ (Clytia hemisphaerica)
aaaattttggatttcaagGTGGTTAATGTCAAGGAATGCAAAAACTCGCA
AGGTTATAACAAATCTAGTTTTCAGAATAATCATTGTCTTAATTTTTGTG
ATGTAAATTCGTTTTAATATCTTCAGGTAgcattgaaattaattttgata
gATAGCATATATTCActaaaagtttattttattttcagggaTGGAGAAAG
AAGGATTTATTAGATCAATTGTACAGTTGGTAGAAGAACTAATCGATCTC
GCTGTGATTTCAACTGATCGACACACGCAAATCAAGAAGCTTATGGCAAC
TGATCCCCTTTTCAATTGGCTGATTCACCAATTCGATCCATGGCATATGG
CTAAAGGATTGtcgaaaaaaatcatcaaagctTCAAAGAAGAAAGGTATT
CTTTACTTAGACGCCAAATGACATTCCATGCTTAGATTATCACTCAGCCC
CCAAGAGATAGGTAATTAAGGTTAATCAGAAGGGTAATAGATACGTCGTA
AGGATCAAATGTACTGTCTACTGGATACAAGATTCTGCCCTGTATTCTTA
GATTTTGTTTACGTACATACCAACACATACACGCTTCAGACTGCAACAAT
CCCAGTGTTCAATCTCACTGATACAACTTTCAATATATATAATTTCTTTC
CATCTACAGGATACGAGAAGCTGGCAGATTGGGCTCCAATGATAGTCAAT
CATTTGTATTGGGCGGTTCAAAATTG

Coding sequence (CDS) from alignment at scaffold_103:38170..38895+

>TCONS_00045926 ID=TCONS_00045926|Name=TCONS_00045926|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_103:38170..38895+ (Clytia hemisphaerica)
aaaattttggatttcaagGTGGTTAATGTCAAGGAATGCAAAAACTCGCA
AGggaTGGAGAAAGAAGGATTTATTAGATCAATTGTACAGTTGGTAGAAG
AACTAATCGATCTCGCTGTGATTTCAACTGATCGACACACGCAAATCAAG
AAGCTTATGGCAACTGATCCCCTTTTCAATTGGCTGATTCACCAATTCGA
TCCATGGCATATGGCTAAAGGATTGtcgaaaaaaatcatcaaagctTCAA
AGAAGAAAGGATACGAGAAGCTGGCAGATTGGGCTCCAATGATAGTCAAT
CATTTGTATTGGGCGGTTCAAAATaaaattttggatttcaagGTGGTTAA
TGTCAAGGAATGCAAAAACTCGCAAGggaTGGAGAAAGAAGGATTTATTA
GATCAATTGTACAGTTGGTAGAAGAACTAATCGATCTCGCTGTGATTTCA
ACTGATCGACACACGCAAATCAAGAAGCTTATGGCAACTGATCCCCTTTT
CAATTGGCTGATTCACCAATTCGATCCATGGCATATGGCTAAAGGATTGt
cgaaaaaaatcatcaaagctTCAAAGAAGAAAGGATACGAGAAGCTGGCA
GATTGGGCTCCAATGATAGTCAATCATTTGTATTGGGCGGTTCAAAATaa
aattttggatttcaagGTGGTTAATGTCAAGGAATGCAAAAACTCGCAAG
ggaTGGAGAAAGAAGGATTTATTAGATCAATTGTACAGTTGGTAGAAGAA
CTAATCGATCTCGCTGTGATTTCAACTGATCGACACACGCAAATCAAGAA
GCTTATGGCAACTGATCCCCTTTTCAATTGGCTGATTCACCAATTCGATC
CATGGCATATGGCTAAAGGATTGtcgaaaaaaatcatcaaagctTCAAAG
AAGAAAGGATACGAGAAGCTGGCAGATTGGGCTCCAATGATAGTCAATCA
TTTGTATTGGGCGGTTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029349XLOC_029349Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045926-proteinTCONS_00045926-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045926-exon-scaffold_103-1491911889:38170..38221TCONS_00045926-exon-scaffold_103-1491911889:38170..38221Clytia hemisphaericaexon
TCONS_00045926-exon-scaffold_103-1510915933:38170..38221TCONS_00045926-exon-scaffold_103-1510915933:38170..38221Clytia hemisphaericaexon
TCONS_00045926-exon-scaffold_103-1575043694:38170..38221TCONS_00045926-exon-scaffold_103-1575043694:38170..38221Clytia hemisphaericaexon
TCONS_00045926-exon-scaffold_103-1491911889:38358..38564TCONS_00045926-exon-scaffold_103-1491911889:38358..38564Clytia hemisphaericaexon
TCONS_00045926-exon-scaffold_103-1510915933:38358..38564TCONS_00045926-exon-scaffold_103-1510915933:38358..38564Clytia hemisphaericaexon
TCONS_00045926-exon-scaffold_103-1575043694:38358..38564TCONS_00045926-exon-scaffold_103-1575043694:38358..38564Clytia hemisphaericaexon
TCONS_00045926-exon-scaffold_103-1491911889:38829..38895TCONS_00045926-exon-scaffold_103-1491911889:38829..38895Clytia hemisphaericaexon
TCONS_00045926-exon-scaffold_103-1510915933:38829..38895TCONS_00045926-exon-scaffold_103-1510915933:38829..38895Clytia hemisphaericaexon
TCONS_00045926-exon-scaffold_103-1575043694:38829..38895TCONS_00045926-exon-scaffold_103-1575043694:38829..38895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_103supercontigscaffold_103:38170..38895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.364951	1.15292	0	0	0	0.201657	0.158396	0.112379	0.476549	0	0	0	0	0	0	0	0	1.30218	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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