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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045922 ID=TCONS_00045922|Name=TCONS_00045922|organism=Clytia hemisphaerica|type=transcript|length=1451bp
CTTCAATTTAATGGGAACTAAATATGTAAACAAAATTTATAGCAGTAATA
TACGTTTGTATGattgaaattttctattttagagtcaAATACAGGATGAA
AAGTGTGTTTTAAGATCTTGTTACAAGTAATTATCATCATTGTTGGAAAG
GTAAAGATGAGTGGCTGCAAACATCCATTTACTAACTGTGCATTATTGCT
GTTATTATTCCTAGTATATACAGTCTACCCAATACCGTTTATAACTACGC
ATCATTTCATGCTATCGCAGGATTTCCTTATAATAGACACGTGTGGAGGA
GCTGTATTTATGTTAACTGCACTCCTTGGGAATCTTCTTTGCTTACTTGT
GTTCAAAGATATAGAAAACAAAGCCAAACTGATATACATTTTAATGTTTA
TAGTTGATACTGTTCAACCTTTTTTCACGTTACCAGTCAAGATTAATGCT
CATTGGGAAATTTACCATAAACGAACTGACGTTGATACCCATTATGAGGA
TATTGTCAAACAATACCAGCATTTATTGAACGCTTTTAATAGCGTTTGGT
ATGCTTTTGTGGTTCTTTCGCTCCTATTCTTCACTTTAATATGTATTTTG
GATTTTTACGTCGCTGCAAAGCAGATTAAACGTGAGAGAATTACGTCGTC
GGTGAAATACACGGCATTGACGTTGGTTGTTTTCACAGCAGCCTTATTAT
CTTACCTCTATTTCTATATTCACGACAGTAACAAATGGACTAAAATCATT
GCACTTTGTGTTGTGAGTTTCTACATACCAATAACTGTATCGACTATATG
TTTAGTGTTATCGTCCTTAATCCGGACTTTCTTAAACGTTCCTTTACTGG
AGGATACAGAACACTCAAAATCAccttcgaataaatttatctgGATGTTG
TGGCTTGCGTATTTAATTTGTTATTTACCGTTTTATATACTAATATCGCG
AGAGAATGAAAACCACCCTGAAAAGATACACGCTATTTATGGACTCGTAC
TCATGAAATCATGCtgtaatatttttcttcttattGAGTTTGATTGTAAC
TCGAAGGAGAAGTTGAAATTGAAACTATATAAAATATCTACTAAAATGGC
GGAATTGTTTTGCAAgaactgttgttgttgttgtggaaaGATCGGAGATT
GCATTTCAGCCGGTAGAAATCGATTAATTGAGATTTTGGAGActagaaac
cattttgtggTTGTTGAAACACCGAGTGGGGTTACTTTACAGAACggaaa
tttcaccactagatcTACTTTGAGTTCTATAAGCTCTGTATAGTATGTAT
GTCTTATAgttgtaaattttattttttctttgtctcTATTTTTAGAAAGG
AACACGTATTTTACTTGAATTACACACCTGTCTCAGTGATCCGGCGAAGT
TTTGAAATCCATCGGGTTGGCTATGGATAAACTTCACCGGGTATAAATAT
G Run BLAST on NCBI protein sequence of TCONS_00045922-protein >TCONS_00045922-protein ID=TCONS_00045922-protein|Name=TCONS_00045922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MSGCKHPFTNCALLLLLFLVYTVYPIPFITTHHFMLSQDFLIIDTCGGAV
FMLTALLGNLLCLLVFKDIENKAKLIYILMFIVDTVQPFFTLPVKINAHW
EIYHKRTDVDTHYEDIVKQYQHLLNAFNSVWYAFVVLSLLFFTLICILDF
YVAAKQIKRERITSSVKYTALTLVVFTAALLSYLYFYIHDSNKWTKIIAL
CVVSFYIPITVSTICLVLSSLIRTFLNVPLLEDTEHSKSPSNKFIWMLWL
AYLICYLPFYILISRENENHPEKIHAIYGLVLMKSCCNIFLLIEFDCNSK
EKLKLKLYKISTKMAELFCKNCCCCCGKIGDCISAGRNRLIEILETRNHF
VVVETPSGVTLQNGNFTTRSTLSSISSV Run BLAST on NCBI transcript from alignment at scaffold_102:480616..482066 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045922 ID=TCONS_00045922|Name=TCONS_00045922|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at scaffold_102:480616..482066 (Clytia hemisphaerica)
CATATTTATACCCGGTGAAGTTTATCCATAGCCAACCCGATGGATTTCAA
AACTTCGCCGGATCACTGAGACAGGTGTGTAATTCAAGTAAAATACGTGT
TCCTTTCTAAAAATAgagacaaagaaaaaataaaatttacaacTATAAGA
CATACATACTATACAGAGCTTATAGAACTCAAAGTAgatctagtggtgaa
atttccGTTCTGTAAAGTAACCCCACTCGGTGTTTCAACAAccacaaaat
ggtttctagTCTCCAAAATCTCAATTAATCGATTTCTACCGGCTGAAATG
CAATCTCCGATCtttccacaacaacaacaacagttcTTGCAAAACAATTC
CGCCATTTTAGTAGATATTTTATATAGTTTCAATTTCAACTTCTCCTTCG
AGTTACAATCAAACTCaataagaagaaaaatattacaGCATGATTTCATG
AGTACGAGTCCATAAATAGCGTGTATCTTTTCAGGGTGGTTTTCATTCTC
TCGCGATATTAGTATATAAAACGGTAAATAACAAATTAAATACGCAAGCC
ACAACATCcagataaatttattcgaaggTGATTTTGAGTGTTCTGTATCC
TCCAGTAAAGGAACGTTTAAGAAAGTCCGGATTAAGGACGATAACACTAA
ACATATAGTCGATACAGTTATTGGTATGTAGAAACTCACAACACAAAGTG
CAATGATTTTAGTCCATTTGTTACTGTCGTGAATATAGAAATAGAGGTAA
GATAATAAGGCTGCTGTGAAAACAACCAACGTCAATGCCGTGTATTTCAC
CGACGACGTAATTCTCTCACGTTTAATCTGCTTTGCAGCGACGTAAAAAT
CCAAAATACATATTAAAGTGAAGAATAGGAGCGAAAGAACCACAAAAGCA
TACCAAACGCTATTAAAAGCGTTCAATAAATGCTGGTATTGTTTGACAAT
ATCCTCATAATGGGTATCAACGTCAGTTCGTTTATGGTAAATTTCCCAAT
GAGCATTAATCTTGACTGGTAACGTGAAAAAAGGTTGAACAGTATCAACT
ATAAACATTAAAATGTATATCAGTTTGGCTTTGTTTTCTATATCTTTGAA
CACAAGTAAGCAAAGAAGATTCCCAAGGAGTGCAGTTAACATAAATACAG
CTCCTCCACACGTGTCTATTATAAGGAAATCCTGCGATAGCATGAAATGA
TGCGTAGTTATAAACGGTATTGGGTAGACTGTATATACTAGGAATAATAA
CAGCAATAATGCACAGTTAGTAAATGGATGTTTGCAGCCACTCATCTTTA
CCTTTCCAACAATGATGATAATTACTTGTAACAAGATCTTAAAACACACT
TTTCATCCTGTATTtgactctaaaatagaaaatttcaatCATACAAACGT
ATATTACTGCTATAAATTTTGTTTACATATTTAGTTCCCATTAAATTGAA
G Coding sequence (CDS) from alignment at scaffold_102:480616..482066 >TCONS_00045922 ID=TCONS_00045922|Name=TCONS_00045922|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_102:480616..482066 (Clytia hemisphaerica)
CTATACAGAGCTTATAGAACTCAAAGTAgatctagtggtgaaatttccGT
TCTGTAAAGTAACCCCACTCGGTGTTTCAACAAccacaaaatggtttcta
gTCTCCAAAATCTCAATTAATCGATTTCTACCGGCTGAAATGCAATCTCC
GATCtttccacaacaacaacaacagttcTTGCAAAACAATTCCGCCATTT
TAGTAGATATTTTATATAGTTTCAATTTCAACTTCTCCTTCGAGTTACAA
TCAAACTCaataagaagaaaaatattacaGCATGATTTCATGAGTACGAG
TCCATAAATAGCGTGTATCTTTTCAGGGTGGTTTTCATTCTCTCGCGATA
TTAGTATATAAAACGGTAAATAACAAATTAAATACGCAAGCCACAACATC
cagataaatttattcgaaggTGATTTTGAGTGTTCTGTATCCTCCAGTAA
AGGAACGTTTAAGAAAGTCCGGATTAAGGACGATAACACTAAACATATAG
TCGATACAGTTATTGGTATGTAGAAACTCACAACACAAAGTGCAATGATT
TTAGTCCATTTGTTACTGTCGTGAATATAGAAATAGAGGTAAGATAATAA
GGCTGCTGTGAAAACAACCAACGTCAATGCCGTGTATTTCACCGACGACG
TAATTCTCTCACGTTTAATCTGCTTTGCAGCGACGTAAAAATCCAAAATA
CATATTAAAGTGAAGAATAGGAGCGAAAGAACCACAAAAGCATACCAAAC
GCTATTAAAAGCGTTCAATAAATGCTGGTATTGTTTGACAATATCCTCAT
AATGGGTATCAACGTCAGTTCGTTTATGGTAAATTTCCCAATGAGCATTA
ATCTTGACTGGTAACGTGAAAAAAGGTTGAACAGTATCAACTATAAACAT
TAAAATGTATATCAGTTTGGCTTTGTTTTCTATATCTTTGAACACAAGTA
AGCAAAGAAGATTCCCAAGGAGTGCAGTTAACATAAATACAGCTCCTCCA
CACGTGTCTATTATAAGGAAATCCTGCGATAGCATGAAATGATGCGTAGT
TATAAACGGTATTGGGTAGACTGTATATACTAGGAATAATAACAGCAATA
ATGCACAGTTAGTAAATGGATGTTTGCAGCCACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045922-exon-scaffold_102-1491911889:480616..482066 | TCONS_00045922-exon-scaffold_102-1491911889:480616..482066 | Clytia hemisphaerica | exon |
| TCONS_00045922-exon-scaffold_102-1510915933:480616..482066 | TCONS_00045922-exon-scaffold_102-1510915933:480616..482066 | Clytia hemisphaerica | exon |
| TCONS_00045922-exon-scaffold_102-1575043694:480616..482066 | TCONS_00045922-exon-scaffold_102-1575043694:480616..482066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:480616..482066 . |
Blast
The following BLAST results are available for this feature:
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