TCONS_00045911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045911
Unique NameTCONS_00045911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045911 ID=TCONS_00045911|Name=TCONS_00045911|organism=Clytia hemisphaerica|type=transcript|length=292bp
AGATCAAGAGCCTGAAGATTGAATTAGCTGATTTACCACTGACCGAGTTC
ACAGTATCCTTTCTGGTAGAGCAATTCTTAAAAAGTTACATAGATaagaa
aaagaagcaaaaacagGCTGAAGAAATGGCGGCTAAATATTCAAAGATAA
CAGAAAGTGGAGAAGATACTGAAACAGATATGGATGGTGACGATGAACCA
TTTGAACCACCAACCGATGAACCCATTTTCTTGGATAGTGAAGACGAAGA
TGAATACTATGGTTATAGCCTCAAACCGAAACAATCGAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_102:256434..256725

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045911 ID=TCONS_00045911|Name=TCONS_00045911|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at scaffold_102:256434..256725 (Clytia hemisphaerica)
TTTTTCGATTGTTTCGGTTTGAGGCTATAACCATAGTATTCATCTTCGTC
TTCACTATCCAAGAAAATGGGTTCATCGGTTGGTGGTTCAAATGGTTCAT
CGTCACCATCCATATCTGTTTCAGTATCTTCTCCACTTTCTGTTATCTTT
GAATATTTAGCCGCCATTTCTTCAGCctgtttttgcttctttttcttATC
TATGTAACTTTTTAAGAATTGCTCTACCAGAAAGGATACTGTGAACTCGG
TCAGTGGTAAATCAGCTAATTCAATCTTCAGGCTCTTGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029334XLOC_029334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045911-exon-scaffold_102-1491911889:256434..256725TCONS_00045911-exon-scaffold_102-1491911889:256434..256725Clytia hemisphaericaexon
TCONS_00045911-exon-scaffold_102-1510915933:256434..256725TCONS_00045911-exon-scaffold_102-1510915933:256434..256725Clytia hemisphaericaexon
TCONS_00045911-exon-scaffold_102-1575043694:256434..256725TCONS_00045911-exon-scaffold_102-1575043694:256434..256725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:256434..256725 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.4656	16.632	14.8639	16.1218	48.8297	34.866	3.73469	14.4482	5.73478	8.77494	2.2878	10.9573	7.98464	16.678	6.83872	12.2955	8.09706	11.1379	7.95243	8.53631	11.7352	12.259	24.5121	22.2686	19.2755	11.8128	10.2684	14.2326	25.3533	30.6451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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