TCONS_00045909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045909
Unique NameTCONS_00045909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045909 ID=TCONS_00045909|Name=TCONS_00045909|organism=Clytia hemisphaerica|type=transcript|length=636bp
CATAATGTTTGTGGTAAATGTTCCTCACAAAAAAGTGCTTTGAAATAAGG
TGATTTATTGGAAATAACCATAATTTGCATTTgttggtttcttataaaag
ttGAAGCacttaaattacaaaaaaggcaAAAGTCGTGTTGCATGTAGTAT
ATTCATAGCTTAGTAAGTATAATAGACAAGAAATGAACAGATACTGGCTA
AGTCCAAGTACTGCTGTGCCGTTGAACAAACCATAAAGCTTAATAACAGT
GTTTGATTATGACGAAAAACCCCTTTTCAAGGATGGAATGTATTTATTAT
TAAACATAATGTTCATTTGTTTATACATTTCTATCCATCGCTCGATGAgt
gatgattttgaaatttttagattgTAAACTCTTGTAGTTTGTACTTTCGA
GGGTTTTAGTAACTTTATTTGTTTTGCTTGACAGGTTTTCAAAGCTAGTT
TTGTCGCCGGTACTGTTACTTGGTAATTCAAATATGTTATGTTAAAGAAC
GATAGCATCAGGTTGaataaattaaatcaaaaaatcGTTTTGAAAATCAC
AAGGCTGTAACGTATAACTTGAGTCTTTCAGGTTGGAATATTAGGCTGCA
CTAACCAATCCCCTCTGATATATTTTGATGTAGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_102:162738..163373

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045909 ID=TCONS_00045909|Name=TCONS_00045909|organism=Clytia hemisphaerica|type=transcript|length=636bp|location=Sequence derived from alignment at scaffold_102:162738..163373 (Clytia hemisphaerica)
CCCCTACATCAAAATATATCAGAGGGGATTGGTTAGTGCAGCCTAATATT
CCAACCTGAAAGACTCAAGTTATACGTTACAGCCTTGTGATTTTCAAAAC
gattttttgatttaatttattCAACCTGATGCTATCGTTCTTTAACATAA
CATATTTGAATTACCAAGTAACAGTACCGGCGACAAAACTAGCTTTGAAA
ACCTGTCAAGCAAAACAAATAAAGTTACTAAAACCCTCGAAAGTACAAAC
TACAAGAGTTTAcaatctaaaaatttcaaaatcatcacTCATCGAGCGAT
GGATAGAAATGTATAAACAAATGAACATTATGTTTAATAATAAATACATT
CCATCCTTGAAAAGGGGTTTTTCGTCATAATCAAACACTGTTATTAAGCT
TTATGGTTTGTTCAACGGCACAGCAGTACTTGGACTTAGCCAGTATCTGT
TCATTTCTTGTCTATTATACTTACTAAGCTATGAATATACTACATGCAAC
ACGACTTTtgccttttttgtaatttaagtGCTTCaacttttataagaaac
caacAAATGCAAATTATGGTTATTTCCAATAAATCACCTTATTTCAAAGC
ACTTTTTTGTGAGGAACATTTACCACAAACATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029332XLOC_029332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045909-exon-scaffold_102-1491911889:162738..163373TCONS_00045909-exon-scaffold_102-1491911889:162738..163373Clytia hemisphaericaexon
TCONS_00045909-exon-scaffold_102-1510915933:162738..163373TCONS_00045909-exon-scaffold_102-1510915933:162738..163373Clytia hemisphaericaexon
TCONS_00045909-exon-scaffold_102-1575043694:162738..163373TCONS_00045909-exon-scaffold_102-1575043694:162738..163373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:162738..163373 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0940743	0.184074	0	0	0	0.100004	0	0	0	0.11067	0.386805	0	0.235895	0	0	0	0.0883223	0.369692	0.0803323	1.05795	0.0952648	0.346438	0	0	0.341782	0	0	0.187913
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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