TCONS_00045906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045906
Unique NameTCONS_00045906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045906 ID=TCONS_00045906|Name=TCONS_00045906|organism=Clytia hemisphaerica|type=transcript|length=627bp
gtacggctctatatcgcctttgctcacctaaacagacgacggtattttgg
tgtttttaccgtcgtcgagcaaagtggacggtgattttggagataTGTCA
ACtatgctttataccgtccccatcgatttatctcgaatacataaactcgc
tagttTTCGCTCAGTATTCGAATTAAAAATCTCTGCTGAAAACATGAATT
TACAAATACCTGGAAAGACTAAACAAGCTGACAGTTTGTAAAATCAATAC
TAAAAGTCTTTCACATATAGCCGTCATAAAatgtttcattaaaaacttaC
CGTACTTATAGCTAATTATCCAATAGTCCGCTCAACtttcaaatttgatt
ggttgaaactcaacAATATGATGTAATCGAGCCAAATAAACCAATCAGTG
CTCAGGAAAGCGTTTGATTGTTAAGCGGACTTTTGGATAGTTGCCGTTAG
TACAATACAGACCATTACATAAAGGTACTGGCATAAAAATCACCATTAAA
AACTAAAACAGTACGCCCTTTCCTTCTAAATAGCACTGATGAATATACAA
CCTCAATATATGTTTTTCATAAAGTCATGCCATTGCTCGTTTATCTTCAA
GAGAGAAAAACAACTGACAACAAaagt
Run BLAST on NCBI

transcript from alignment at scaffold_102:30002..30628

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045906 ID=TCONS_00045906|Name=TCONS_00045906|organism=Clytia hemisphaerica|type=transcript|length=627bp|location=Sequence derived from alignment at scaffold_102:30002..30628 (Clytia hemisphaerica)
acttTTGTTGTCAGTTGTTTTTCTCTCTTGAAGATAAACGAGCAATGGCA
TGACTTTATGAAAAACATATATTGAGGTTGTATATTCATCAGTGCTATTT
AGAAGGAAAGGGCGTACTGTTTTAGTTTTTAATGGTGATTTTTATGCCAG
TACCTTTATGTAATGGTCTGTATTGTACTAACGGCAACTATCCAAAAGTC
CGCTTAACAATCAAACGCTTTCCTGAGCACTGATTGGTTTATTTGGCTCG
ATTACATCATATTgttgagtttcaaccaatcaaatttgaaaGTTGAGCGG
ACTATTGGATAATTAGCTATAAGTACGGtaagtttttaatgaaacatTTT
ATGACGGCTATATGTGAAAGACTTTTAGTATTGATTTTACAAACTGTCAG
CTTGTTTAGTCTTTCCAGGTATTTGTAAATTCATGTTTTCAGCAGAGATT
TTTAATTCGAATACTGAGCGAAaactagcgagtttatgtattcgagataa
atcgatggggacggtataaagcataGTTGACAtatctccaaaatcaccgt
ccactttgctcgacgacggtaaaaacaccaaaataccgtcgtctgtttag
gtgagcaaaggcgatatagagccgtac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029329XLOC_029329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045906-exon-scaffold_102-1491911889:30002..30628TCONS_00045906-exon-scaffold_102-1491911889:30002..30628Clytia hemisphaericaexon
TCONS_00045906-exon-scaffold_102-1510915933:30002..30628TCONS_00045906-exon-scaffold_102-1510915933:30002..30628Clytia hemisphaericaexon
TCONS_00045906-exon-scaffold_102-1575043694:30002..30628TCONS_00045906-exon-scaffold_102-1575043694:30002..30628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:30002..30628 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186593	0	0.189576	0	0	0	0	0.105757	0.45826	0.186744	0.644365	0.179537	1.38885	0.711453	0.712591	0.459796	0.28923	0.783687	1.28163	0.750104	0.479424	0.286813	0.110585	0.102268	0	0.347352	0.920807	1.10142	6.23358	7.24308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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