TCONS_00045902 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045902
Unique Name	TCONS_00045902
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2233

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_102:508502..510911-

transcript sequence

>TCONS_00045902 ID=TCONS_00045902|Name=TCONS_00045902|organism=Clytia hemisphaerica|type=transcript|length=2233bp
tCGATGACTAACATAGCAGTCATAAACTCGAGGGTCACTCTTTAAAAAAT
AGGATATGTGAATATCCGCAGACTATGGTCgcaaaaataacaataaattt
tgaggtaaacttcggaaaaaaaactatttaaCTAATGACTTGATCCAAAA
ATTGTCTCCTAAGGTCCTAATttcattgggctattccagaaatagtctgt
acccgctatgttgaggaggtgtgacgtccagggtagtctggaaaataaaa
aatccagggtggtctggtttttttaatgataaaatCCAGGGTCAGTATAA
TCGGGCTGAAAATCCAGGGTGATCAGTATAACtaggttgaaaatccaggg
tggtccaaagaaatgggagaaaaaatccaacggggtcctgaaaaattgga
aaaaaaatccagggggtcacctttaaaaaaaaagatctccTCAACATGAA
gggtaaaaaacattttctggaatagcctatTTTTAGTCCCAGTTTTATCC
ATCCCCGAATACGAAGGCTGGGATCCAGGCTTTCCGCTGCAATATTCTTT
ACACGGTCTTAAAAATTTCCGCAAtataaaccttccagatgttgaaaatt
atCTCGACTCGAGCTTGGAAATCGTTATACAAATGAAAACCAAGAATGCT
TTTTCCTATATTAAGAATTTATAAAATTTAGCCAATTTATTCGGGACACG
CTGTATTCCATAATTATTAATTGTGAAAAGAAATAATCACAAAAGCTGTG
CACGCATTTTGTTTACAGCTTAacccaatacaccttttcgaccgtagcca
ccaattgccgcgcgggcatttttttgtccactttatcccactaaaaccgt
cccagtccttttttcgcaccaatagacaatagaaaaatgcgtcaaaaaag
gattgggacggttttagtgggataaagcggacaaaaaaatgcccgcgcga
ctacggtcgaaaaggtgcatTTACAGTCCACATGTACAGTTCATAGGATG
GAATTTTCTTCTCAAGCCCGGTGGAAGCGGGCGGGGATACTGGGGAGCTT
TCACATTTTGATTGATTAGGTGTAGCACTCATTATGATGACTCAAGAAAT
AGAGATTCTCAAATATTAAAGATTTAGTAGTTGAGTTTATTGTTACCGAG
TctgtttacaagttttttctTAATCATTTTTTTAGAGTATACCACCTGCT
GTGCAAAATTATTGTGCTTCCCAGCTTATACCCACACACATTTCGCTCTC
AAGACCCATAATGCCTTTCATCGACCACGTTAGTAGTATGAAGTACATCT
CATTAAAATTAACGTTTTCTAAGTAACAAAAGTAGCATCTCCATTATCCC
ACGTACACTAGTTACAATAATATTTCAGATCTCATTGACAAATATACCCA
CATATTTAGCTCTCAAGACCCACAATGCCTTTCATCAAACACGTGCGTAG
GATGAAGCAACTTTTTATAAGTAACAAAAATATCATCTCCATTATCCCAC
GTACACTAGTTACAATAATATTGCAGACCTCGTGGCTTTTCATATTTCCT
CCAGTGATTAAAAATATTTGAGGTTTTATAACATTCTTACCATGACTCAT
AAATTACTTAAAATTCCAGGCTCAGCTCCGAGGGCTGGGGTCCACGGCAT
CACATATCGATTAACTTATGGAACCAATGTCAATCGAACGTTCAGCTAAT
GTCCATGacgtccatataatgttagGAGAACGCTTTTCGAATAACGTATG
AAAACTAGGTTGCTTCCGCCGGTAGTAACATGCTATAACACATCGTATGA
CCGCTAGGTTACACATCATCGAATAAAAGACTTTCTCCGGCGTTAAcata
acgttaaaacaacgtctaGATAACATCCATTtggtccatataacgttaga
tgaacgttcaAACAACGTCTGTCAGTCAATAACACtatcaaattagccta
tcataggttGTTTCGTGGTCTACTATAACGTTAAtataacgttaaaacaa
cgtccaGACAACgtCATTCAAAAACACCATCTAATTAGCCTATCATGGGg
tacgttaaaacaacgtccaAACAACGTCCACTTGGTCCATATAACGTTTC
AAACAACGTGTGTGGTAGATTGATTGCACAATCATCAGATGAAGGTTTTG
GCTTTTCGTTCGATAAGATGGTTAACACTTTGTGCGAAAATACCAATCGC
TGTGATGATCCCACTACCCTATATTGgtaaagt

Run BLAST on NCBI

transcript from alignment at scaffold_102:508502..510911-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045902 ID=TCONS_00045902|Name=TCONS_00045902|organism=Clytia hemisphaerica|type=transcript|length=2410bp|location=Sequence derived from alignment at scaffold_102:508502..510911- (Clytia hemisphaerica)
TCGATGACTAACATAGCAGTCATAAACTCGAGGGTCACTCTTTAAAAAAT
AGGATATGTGAATATCCGCAGACTATGGTCGCAAAAATAACAATAAATTT
TGAGGTAAACTTCGGAAAAAAAACTATTTAACTAATGACTTGATCCAAAA
ATTGTCTCCTAAGGTCCTAATTTCATTGGGCTATTCCAGAAATAGTCTGT
ACCCGCTATGTTGAGGAGGTGTGACGTCCAGGGTAGTCTGGAAAATAAAA
AATCCAGGGTGGTCTGGTTTTTTTAATGATAAAATCCAGGGTCAGTATAA
TCGGGCTGAAAATCCAGGGTGATCAGTATAACTAGGTTGAAAATCCAGGG
TGGTCCAAAGAAATGGGAGAAAAAATCCAACGGGGTCCTGAAAAATTGGA
AAAAAAATCCAGGGGGTCACCTTTAAAAAAAAAGATCTCCTCAACATGAA
GGGTAAAAAACATTTTCTGGAATAGCCTATTTTTAGTCCCAGTTTTATCC
ATCCCCGAATACGAAGGCTGGGATCCAGGCTTTCCGCTGCAATATTCTTT
ACACGGTCTTAAAAATTTCCGCAATATAAACCTTCCAGATGTTGAAAATT
ATCTCGACTCGAGCTTGGAAATCGTTATACAAATGAAAACCAAGAATGCT
TTTTCCTATATTAAGAATTTATAAAATTTAGCCAATTTATTCGGGACACG
CTGTATTCCATAATTATTAATTGTGAAAAGAAATAATCACAAAAGCTGTG
CACGCATTTTGTTTACAGCTTAACCCAATACACCTTTTCGACCGTAGCCA
CCAATTGCCGCGCGGGCATTTTTTTGTCCACTTTATCCCACTAAAACCGT
CCCAGTCCTTTTTTCGCACCAATAGACAATAGAAAAATGCGTCAAAAAAG
GATTGGGACGGTTTTAGTGGGATAAAGCGGACAAAAAAATGCCCGCGCGA
CTACGGTCGAAAAGGTGCATTTACAGTCCACATGTACAGTTCATAGGATG
GAATTTTCTTCTCAAGCCCGGTGGAAGCGGGCGGGGATACTGGGGAGCTT
TCACATTTTGATTGATTAGGTGTAGCACTCATTATGATGACTCAAGAAAT
AGAGATTCTCAAATATTAAAGATTTAGTAGTTGAGTTTATTGTTACCGAG
TCTGTTTACAAGTTTTTTCTTAATCATTTTTTTAGAGTATACCACCTGCT
GTGCAAAATTATTGTGCTTCCCAGCTTATACCCACACACATTTCGCTCTC
AAGACCCATAATGCCTTTCATCGACCACGTTAGTAGTATGAAGTACATCT
CATTAAAATTAACGTTTTCTAAGTAACAAAAGTAGCATCTCCATTATCCC
ACGTACACTAGTTACAATAATATTTCAGATCTCATTGACAAATATACCCA
CATATTTAGCTCTCAAGACCCACAATGCCTTTCATCAAACACGTGCGTAG
GATGAAGCAACTTTTTATAAGTAACAAAAATATCATCTCCATTATCCCAC
GTACACTAGTTACAATAATATTGCAGACCTCGTGGCTTTTCATATTTCCT
CCAGTGATTAAAAATATTTGAGGTTTTATAACATTCTTACCATGACTCAT
AAATTACTTAAAATTCCAGGCTCAGCTCCGAGGGCTGGGGTCCACGGCAT
CACATATCGATTAACTTATGGAACCAATGTCAATCGAACGTTCAGCTAAT
GTCCATGACGTCCATATAATGTTAGGAGAACGCTTTTCGAATAACGTATG
AAAACTAGGTTGCTTCCGCCGGTAGTAACATGCTATAACACATCGTATGA
CCGCTAGGTTACACATCATCGAATAAAAGACTTTCTCCGGCGTTAACATA
ACGTTAAAACAACGTCTAGATAACATCCATTTGGTCCATATAACGTTAGA
TGAACGTTCAAACAACGTCTGTCAGTCAATAACACTATCAAATTAGCCTA
TCATAGGTTGTTTCGTGGTCTACTATAACGTTAATATAACGTTAAAACAA
CGTCCAGACAACATCCATTTGGTCCATATAACGTTAGGTGAACGTTTAAA
CAACGTCATTCAAAACACACCATCTAATTAGCCTATCATAGGTTGTTTCA
TGGTTTACTATAACGTTAATATAACGTTAAAACAACGTCGATACAACATC
CATTTGGTCCATATAACGTTAGATGAACGTTTAAACAACGTCATTCAAAA
ACACCATCTAATTAGCCTATCATGGGGTACGTTAAAACAACGTCCAAACA
ACGTCCACTTGGTCCATATAACGTTTCAAACAACGTGTGTGGTAGATTGA
TTGCACAATCATCAGATGAAGGTTTTGGCTTTTCGTTCGATAAGATGGTT
AACACTTTGTGCGAAAATACCAATCGCTGTGATGATCCCACTACCCTATA
TTGGTAAAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029326	XLOC_029326	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045902-exon-scaffold_102-1575043694:508900..510911	TCONS_00045902-exon-scaffold_102-1575043694:508900..510911	Clytia hemisphaerica	exon
TCONS_00045902-exon-scaffold_102-1575043694:508502..508722	TCONS_00045902-exon-scaffold_102-1575043694:508502..508722	Clytia hemisphaerica	exon
TCONS_00045902-exon-scaffold_102-1510915933:508900..510911	TCONS_00045902-exon-scaffold_102-1510915933:508900..510911	Clytia hemisphaerica	exon
TCONS_00045902-exon-scaffold_102-1510915933:508502..508722	TCONS_00045902-exon-scaffold_102-1510915933:508502..508722	Clytia hemisphaerica	exon
TCONS_00045902-exon-scaffold_102-1491911889:508900..510911	TCONS_00045902-exon-scaffold_102-1491911889:508900..510911	Clytia hemisphaerica	exon
TCONS_00045902-exon-scaffold_102-1491911889:508502..508722	TCONS_00045902-exon-scaffold_102-1491911889:508502..508722	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_102	supercontig	scaffold_102:508502..510911 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.134313	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00045902 vs. Swiss-Prot (Human)

BLAST of TCONS_00045902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00045902 (transcript) - C. hemisphaerica